Clone BO11956 Report

Search the DGRC for BO11956

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:119
Well:56
Vector:pDNR-Dual
Associated Gene/TranscriptWASp-RA
Protein status:BO11956.pep:
Sequenced Size:1615

Clone Sequence Records

BO11956.3prime Sequence

574 bp (528 high quality bases) assembled on 2006-04-19

> BO11956.3prime
ATGGTCTAGAAAGCTTGCGTCCCACTCCCCTTCGTTGTCCGAGGACTCGG
TTTCGTCCTCATCCGAGTGGATGGCGTTTCCACGCGCCGCCAGCGCTCGA
CGCAGTGCATCGGCCAATGCGTCAGTGCCTGCTCCACTGTCGCTGTTTCG
CTGACTGCCCAGCTCCCGTTCCTTGGCCGGCTTCAAAACAGTGCCCTGAC
GGATATCCTTCATTAAATCGCTGCGTGAGTCGCCACTTCCAGTGCTGAGA
GCAGTCGTGTCCACTTTCTTCAGCTGGGTTCCCTTGCGTATGGCGTCCAT
CAGTGCATTGCGTGGATCTGGAGCCGCCGGAGCTGCTGGCCGGGCTGCTT
GAGTCGGTGCGTGCGTGGTCGTAATGACGGGGATCTCTCCCACTGGCATG
GGCGGGGGCGGTGGTGGCGGCACCGCTGCTGGTGGTGGCGGTGGTGGAGG
TGGCGGCGCCACAACAGGCGCACTGACTGGTGGCGGTGGTGGAGCGGTGC
TAATGGGTGGTGGTCTGTTAGGTGGTGGAGGAGTTTTCTCCTTTGCCTTT
AATGTTCTATTAATATTTAAGGTT

BO11956.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:34:04
Subject Length Description Subject Range Query Range Score Percent Strand
CG1520-PA 1584 WASp-RA 1067..1581 533..19 2575 100 Minus
CG1520-PB 1584 WASp-RB 1067..1581 533..19 2575 100 Minus
CG1520-PC 1485 WASp-RC 968..1482 533..19 2575 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-03 17:40:29
Subject Length Description Subject Range Query Range Score Percent Strand
WASp-RD 2734 CG1520-RD 1273..1787 533..19 2575 100 Minus
WASp-RC 2500 CG1520-RC 1039..1553 533..19 2575 100 Minus
WASp-RB 2682 CG1520-RB 1221..1735 533..19 2575 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-03 17:40:19
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 28825453..28825703 19..269 1255 100 Plus
3R 32079331 3R 28825765..28825954 268..457 950 100 Plus
Blast to na_te.dros performed on 2015-02-03 17:40:24 has no hits.

BO11956.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:21:40 Download gff for BO11956.3prime
Subject Subject Range Query Range Percent Splice Strand
WASp-PA 1067..1584 15..533 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 04:51:29 Download gff for BO11956.3prime
Subject Subject Range Query Range Percent Splice Strand
CG1520-PC 968..1485 15..533 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-09 05:36:54 Download gff for BO11956.3prime
Subject Subject Range Query Range Percent Splice Strand
WASp-RB 1221..1739 14..533 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-03 19:03:31 Download gff for BO11956.3prime
Subject Subject Range Query Range Percent Splice Strand
WASp-RB 1221..1739 14..533 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-03 19:03:31 Download gff for BO11956.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 28825765..28825953 268..456 100 <- Plus
3R 28826010..28826086 457..533 100   Plus
3R 28825449..28825701 14..267 99 <- Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-09 05:36:54 Download gff for BO11956.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 24651171..24651423 14..267 99 <- Plus
arm_3R 24651487..24651675 268..456 100 <- Plus
arm_3R 24651732..24651808 457..533 100   Plus

BO11956.5prime Sequence

918 bp (768 high quality bases) assembled on 2006-04-19

> BO11956.5prime
GAAGTTATCAGTCGACATGAGCAGCGGAATGAGGTCGCAGGACGGTCCAC
GGGCGAAGGTCAATGCCGCCAGTACGCTGCTCACCCAGGAGGAGAATGAG
GCCGTCTTCAAGCTGCTGGGCAAGAAGTGCCAGACACTCAACACCGCCGT
GGTGCAGATCTACAAGACGGAGGGCAGCGCCCATGCCCACTGGAAGAAGC
GACACACCGGGGTGGTGTGCTTCGTCAAGGATAGCGCCATCCGATCCTAT
TTCATGCGCGCCTACTGCCTGATCAAGAACGAGCTAATCTGGGAGCACGA
GATCTACGATGGCATGGAGGTGGTCAAGTCGCGACCCTTTCTGCTTACCT
TCGAGGGCAGTGATGGTCATGTGGGACTAAACTTCGTGTCCGAGGAGGAG
TGCGACTCCTTCTTCCGCATTGTGGACGCCACCATAGAGACGCGTAACCG
CAAACGACAAGAGAAACGCAACCGGCAGAAAAGCCAACAGGCGCCCAATG
CTCCATTGCCTCAGGTGCAGCGGGAGCCGGCCAGGCCACCACCCATGCAA
GGTGGGTTGTCCTCCACGGACGGCGTTCAGCTGAGGAACAACAAGATCAA
CTCGGTGACACTGACGCCTGCACCAGCGCCAGCGCAGTCGAAGAATTTCC
TATCCAGTAGCTTTGGTCTGGGCAACAATGCGAAGGACAAGAAGCGCAAG
GTGACCAAGGCGGACATCAGCCGGCCGACAAACTTTGTACACCTCAGCCA
CGTGGGCTGGGATGCGCAGAAGGGATTTGATCTGGCGGGCAACGAGAACG
ACGAAGTGCTGAACGAGTTCTTCGTGAAGGCAGGTGTCTCGGGAGTGGAG
CTAAAAGATCGGGACACCCCGCGCTTCATCTACGACTTCATACAGAGCAA
CAATGTCCTGGGCTTCGG

BO11956.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:34:05
Subject Length Description Subject Range Query Range Score Percent Strand
CG1520-PA 1584 WASp-RA 1..853 17..869 4240 99.8 Plus
CG1520-PB 1584 WASp-RB 1..853 17..869 4240 99.8 Plus
CG1520-PC 1485 WASp-RC 17..754 132..869 3665 99.8 Plus
CG1520-PA 1584 WASp-RA 858..895 874..911 190 100 Plus
CG1520-PB 1584 WASp-RB 858..895 874..911 190 100 Plus
CG1520-PC 1485 WASp-RC 759..796 874..911 190 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 22:27:54
Subject Length Description Subject Range Query Range Score Percent Strand
WASp-RD 2734 CG1520-RD 207..1107 17..918 4425 99.6 Plus
WASp-RB 2682 CG1520-RB 155..1055 17..918 4425 99.6 Plus
WASp-RA 2794 CG1520-RA 267..1167 17..918 4425 99.6 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 22:27:48
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 28826325..28826874 911..362 2675 99.1 Minus
3R 32079331 3R 28826946..28827177 362..131 1160 100 Minus
3R 32079331 3R 28830502..28830618 133..17 585 100 Minus
Blast to na_te.dros performed 2015-02-10 22:27:51
Subject Length Description Subject Range Query Range Score Percent Strand
Max-element 8556 Max-element DME487856 8556bp Derived from AJ487856 (Rel. 71, Last updated, Version 1). 7852..7919 577..643 130 67.6 Plus

BO11956.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:21:42 Download gff for BO11956.5prime
Subject Subject Range Query Range Percent Splice Strand
WASp-PA 1..901 17..918 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 04:51:31 Download gff for BO11956.5prime
Subject Subject Range Query Range Percent Splice Strand
CG1520-PB 1..901 17..918 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-22 05:39:51 Download gff for BO11956.5prime
Subject Subject Range Query Range Percent Splice Strand
WASp-RA 267..1167 17..918 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 00:11:04 Download gff for BO11956.5prime
Subject Subject Range Query Range Percent Splice Strand
WASp-RA 267..1167 17..918 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 00:11:04 Download gff for BO11956.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 28826947..28827174 134..361 100 <- Minus
3R 28830502..28830618 17..133 100   Minus
3R 28826319..28826874 362..918 99 <- Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-22 05:39:51 Download gff for BO11956.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 24652041..24652596 362..918 99 <- Minus
arm_3R 24652669..24652896 134..361 100 <- Minus
arm_3R 24656224..24656340 17..133 100   Minus

BO11956.complete Sequence

1615 bp assembled on 2008-01-17

GenBank Submission: FJ632257

> BO11956.complete
GAAGTTATCAGTCGACATGAGCAGCGGAATGAGGTCGCAGGACGGTCCAC
GGGCGAAGGTCAATGCCGCCAGTACGCTGCTCACCCAGGAGGAGAATGAG
GCCGTCTTCAAGCTGCTGGGCAAGAAGTGCCAGACACTCAACACCGCCGT
GGTGCAGATCTACAAGACGGAGGGCAGCGCCCATGCCCACTGGAAGAAGC
GACACACCGGGGTGGTGTGCTTCGTCAAGGATAGCGCCATCCGATCCTAT
TTCATGCGCGCCTACTGCCTGATCAAGAACGAGCTAATCTGGGAGCACGA
GATCTACGATGGCATGGAGGTGGTCAAGTCGCGACCCTTTCTGCTTACCT
TCGAGGGCAGTGATGGTCATGTGGGACTAAACTTCGTGTCCGAGGAGGAG
TGCGACTCCTTCTTCCGCATTGTGGACGCCACCATAGAGACGCGTAACCG
CAAACGACAAGAGAAACGCAACCGGCAGAAAAGCCAACAGGCGCCCAATG
CTCCATTGCCTCAGGTGCAGCGGGAGCCGGCCAGGCCACCACCCATGCAA
GGTGGGTTGTCCTCCACGGACGGCGTTCAGCTGAGGAACAACAAGATCAA
CTCGGTGACACTGACGCCTGCACCAGCGCCAGCGCAGTCGAAGAATTTCC
TATCCAGTAGCTTTGGTCTGGGCAACAATGCGAAGGACAAGAAGCGCAAG
GTGACCAAGGCGGACATCAGCCGGCCGACAAACTTTGTACACCTCAGCCA
CGTGGGCTGGGATGCGCAGAAGGGATTTGATCTGGCGGGCAACGAGAACG
ACGAAGTGCTGAACGAGTTCTTCGTGAAGGCAGGTGTCTCGGAAGTGGAG
CTAAAAGATCGGGACACCCGCGCCTTCATCTACGACTTCATACAGAGCAA
CAATGTCCTGGCTTCGGTGAAGCAATACAGTGTAGAATCCCCTACGGAAA
CAGCGGCTCCCATGCCACCACCGGTGCCAACCCGTCATCCATCTAATGGC
AACCAAAGAACTGCTCCTCCGCTGCCGCCGGCAAGACAACCACCGCCCGC
AGTTCCCGTTACTGTGCCGGGCGCCGCACGAGCTCCTCCACCACCTAACA
GACCACCACCCATTAGCACCGCTCCACCACCGCCACCAGTCAGTGCGCCT
GTTGTGGCGCCGCCACCTCCACCACCGCCACCACCAGCAGCGGTGCCGCC
ACCACCGCCCCCGCCCATGCCAGTGGGAGAGATCCCCGTCATTACGACCA
CGCACGCACCGACTCAAGCAGCCCGGCCAGCAGCTCCGGCGGCTCCAGAT
CCACGCAATGCACTGATGGACGCCATACGCAAGGGAACCCAGCTGAAGAA
AGTGGACACGACTGCTCTCAGCACTGGAAGTGGCGACTCACGCAGCGATT
TAATGAAGGATATCCGTCAGGGCACTGTTTTGAAGCCGGCCAAGGAACGG
GAGCTGGGCAGTCAGCGAAACAGCGACAGTGGAGCAGGCACTGACGCATT
GGCCGATGCACTGCGTCGAGCGCTGGCGGCGCGTGGAAACGCCATCCACT
CGGATGAGGACGAAACCGAGTCCTCGGACAACGAAGGGGAGTGGGACGCA
AGCTTTCTAGACCAT

BO11956.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 23:34:44
Subject Length Description Subject Range Query Range Score Percent Strand
WASp-RD 1584 CG1520-PD 1..1581 17..1597 7905 100 Plus
WASp-RB 1584 CG1520-PB 1..1581 17..1597 7905 100 Plus
WASp-RA 1584 CG1520-PA 1..1581 17..1597 7905 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 23:34:45
Subject Length Description Subject Range Query Range Score Percent Strand
WASp-RD 2734 CG1520-RD 207..1787 17..1597 7905 100 Plus
WASp-RB 2682 CG1520-RB 155..1735 17..1597 7905 100 Plus
WASp-RA 2794 CG1520-RA 267..1847 17..1597 7905 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 23:34:42
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 28826242..28826874 994..362 3165 100 Minus
3R 32079331 3R 28825453..28825703 1597..1347 1255 100 Minus
3R 32079331 3R 28826946..28827177 362..131 1160 100 Minus
3R 32079331 3R 28825765..28825954 1348..1159 950 100 Minus
3R 32079331 3R 28826010..28826174 1159..995 825 100 Minus
3R 32079331 3R 28830502..28830618 133..17 585 100 Minus
Blast to na_te.dros performed 2014-11-27 23:34:43
Subject Length Description Subject Range Query Range Score Percent Strand
Max-element 8556 Max-element DME487856 8556bp Derived from AJ487856 (Rel. 71, Last updated, Version 1). 7852..7919 577..643 130 67.6 Plus

BO11956.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 13:59:35 Download gff for BO11956.complete
Subject Subject Range Query Range Percent Splice Strand
WASp-RB 1..1584 17..1601 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-07-28 15:32:56 Download gff for BO11956.complete
Subject Subject Range Query Range Percent Splice Strand
WASp-RB 155..1735 17..1599 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:32:24 Download gff for BO11956.complete
Subject Subject Range Query Range Percent Splice Strand
WASp-RA 267..1847 17..1599 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 13:59:35 Download gff for BO11956.complete
Subject Subject Range Query Range Percent Splice Strand
WASp-RB 155..1739 17..1602 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:03:44 Download gff for BO11956.complete
Subject Subject Range Query Range Percent Splice Strand
WASp-RA 267..1847 17..1599 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:03:44 Download gff for BO11956.complete
Subject Subject Range Query Range Percent Splice Strand
3R 28830502..28830618 17..133 100   Minus
3R 28825451..28825701 1349..1599 99 <- Minus
3R 28825765..28825953 1160..1348 100 <- Minus
3R 28826010..28826174 995..1159 100 <- Minus
3R 28826242..28826874 362..994 100 <- Minus
3R 28826947..28827174 134..361 100 <- Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:32:24 Download gff for BO11956.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 24651173..24651423 1349..1599 99 <- Minus
arm_3R 24651487..24651675 1160..1348 100 <- Minus
arm_3R 24651732..24651896 995..1159 100 <- Minus
arm_3R 24651964..24652596 362..994 100 <- Minus
arm_3R 24652669..24652896 134..361 100 <- Minus
arm_3R 24656224..24656340 17..133 100   Minus

BO11956.pep Sequence

Translation from 16 to 1615

> BO11956.pep
MSSGMRSQDGPRAKVNAASTLLTQEENEAVFKLLGKKCQTLNTAVVQIYK
TEGSAHAHWKKRHTGVVCFVKDSAIRSYFMRAYCLIKNELIWEHEIYDGM
EVVKSRPFLLTFEGSDGHVGLNFVSEEECDSFFRIVDATIETRNRKRQEK
RNRQKSQQAPNAPLPQVQREPARPPPMQGGLSSTDGVQLRNNKINSVTLT
PAPAPAQSKNFLSSSFGLGNNAKDKKRKVTKADISRPTNFVHLSHVGWDA
QKGFDLAGNENDEVLNEFFVKAGVSEVELKDRDTRAFIYDFIQSNNVLAS
VKQYSVESPTETAAPMPPPVPTRHPSNGNQRTAPPLPPARQPPPAVPVTV
PGAARAPPPPNRPPPISTAPPPPPVSAPVVAPPPPPPPPPAAVPPPPPPP
MPVGEIPVITTTHAPTQAARPAAPAAPDPRNALMDAIRKGTQLKKVDTTA
LSTGSGDSRSDLMKDIRQGTVLKPAKERELGSQRNSDSGAGTDALADALR
RALAARGNAIHSDEDETESSDNEGEWDASFLDH

BO11956.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 02:27:13
Subject Length Description Subject Range Query Range Score Percent Strand
WASp-PD 527 CG1520-PD 1..527 1..527 2771 100 Plus
WASp-PB 527 CG1520-PB 1..527 1..527 2771 100 Plus
WASp-PA 527 CG1520-PA 1..527 1..527 2771 100 Plus
WASp-PC 494 CG1520-PC 3..494 36..527 2584 99.4 Plus
CG5514-PC 1109 CG5514-PC 262..601 202..527 236 26.2 Plus