Clone Sequence Records
BO11956.3prime Sequence
574 bp (528 high quality bases) assembled on 2006-04-19
> BO11956.3prime
ATGGTCTAGAAAGCTTGCGTCCCACTCCCCTTCGTTGTCCGAGGACTCGG
TTTCGTCCTCATCCGAGTGGATGGCGTTTCCACGCGCCGCCAGCGCTCGA
CGCAGTGCATCGGCCAATGCGTCAGTGCCTGCTCCACTGTCGCTGTTTCG
CTGACTGCCCAGCTCCCGTTCCTTGGCCGGCTTCAAAACAGTGCCCTGAC
GGATATCCTTCATTAAATCGCTGCGTGAGTCGCCACTTCCAGTGCTGAGA
GCAGTCGTGTCCACTTTCTTCAGCTGGGTTCCCTTGCGTATGGCGTCCAT
CAGTGCATTGCGTGGATCTGGAGCCGCCGGAGCTGCTGGCCGGGCTGCTT
GAGTCGGTGCGTGCGTGGTCGTAATGACGGGGATCTCTCCCACTGGCATG
GGCGGGGGCGGTGGTGGCGGCACCGCTGCTGGTGGTGGCGGTGGTGGAGG
TGGCGGCGCCACAACAGGCGCACTGACTGGTGGCGGTGGTGGAGCGGTGC
TAATGGGTGGTGGTCTGTTAGGTGGTGGAGGAGTTTTCTCCTTTGCCTTT
AATGTTCTATTAATATTTAAGGTT
BO11956.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:34:04
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG1520-PA | 1584 | WASp-RA | 1067..1581 | 533..19 | 2575 | 100 | Minus |
CG1520-PB | 1584 | WASp-RB | 1067..1581 | 533..19 | 2575 | 100 | Minus |
CG1520-PC | 1485 | WASp-RC | 968..1482 | 533..19 | 2575 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-03 17:40:29
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
WASp-RD | 2734 | CG1520-RD | 1273..1787 | 533..19 | 2575 | 100 | Minus |
WASp-RC | 2500 | CG1520-RC | 1039..1553 | 533..19 | 2575 | 100 | Minus |
WASp-RB | 2682 | CG1520-RB | 1221..1735 | 533..19 | 2575 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-03 17:40:19
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 28825453..28825703 | 19..269 | 1255 | 100 | Plus |
3R | 32079331 | 3R | 28825765..28825954 | 268..457 | 950 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-03 17:40:24 has no hits.
BO11956.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:21:40 Download gff for
BO11956.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
WASp-PA | 1067..1584 | 15..533 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 04:51:29 Download gff for
BO11956.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1520-PC | 968..1485 | 15..533 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-09 05:36:54 Download gff for
BO11956.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
WASp-RB | 1221..1739 | 14..533 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-03 19:03:31 Download gff for
BO11956.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
WASp-RB | 1221..1739 | 14..533 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-03 19:03:31 Download gff for
BO11956.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 28825765..28825953 | 268..456 | 100 | <- | Plus |
3R | 28826010..28826086 | 457..533 | 100 | | Plus |
3R | 28825449..28825701 | 14..267 | 99 | <- | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-09 05:36:54 Download gff for
BO11956.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 24651171..24651423 | 14..267 | 99 | <- | Plus |
arm_3R | 24651487..24651675 | 268..456 | 100 | <- | Plus |
arm_3R | 24651732..24651808 | 457..533 | 100 | | Plus |
BO11956.5prime Sequence
918 bp (768 high quality bases) assembled on 2006-04-19
> BO11956.5prime
GAAGTTATCAGTCGACATGAGCAGCGGAATGAGGTCGCAGGACGGTCCAC
GGGCGAAGGTCAATGCCGCCAGTACGCTGCTCACCCAGGAGGAGAATGAG
GCCGTCTTCAAGCTGCTGGGCAAGAAGTGCCAGACACTCAACACCGCCGT
GGTGCAGATCTACAAGACGGAGGGCAGCGCCCATGCCCACTGGAAGAAGC
GACACACCGGGGTGGTGTGCTTCGTCAAGGATAGCGCCATCCGATCCTAT
TTCATGCGCGCCTACTGCCTGATCAAGAACGAGCTAATCTGGGAGCACGA
GATCTACGATGGCATGGAGGTGGTCAAGTCGCGACCCTTTCTGCTTACCT
TCGAGGGCAGTGATGGTCATGTGGGACTAAACTTCGTGTCCGAGGAGGAG
TGCGACTCCTTCTTCCGCATTGTGGACGCCACCATAGAGACGCGTAACCG
CAAACGACAAGAGAAACGCAACCGGCAGAAAAGCCAACAGGCGCCCAATG
CTCCATTGCCTCAGGTGCAGCGGGAGCCGGCCAGGCCACCACCCATGCAA
GGTGGGTTGTCCTCCACGGACGGCGTTCAGCTGAGGAACAACAAGATCAA
CTCGGTGACACTGACGCCTGCACCAGCGCCAGCGCAGTCGAAGAATTTCC
TATCCAGTAGCTTTGGTCTGGGCAACAATGCGAAGGACAAGAAGCGCAAG
GTGACCAAGGCGGACATCAGCCGGCCGACAAACTTTGTACACCTCAGCCA
CGTGGGCTGGGATGCGCAGAAGGGATTTGATCTGGCGGGCAACGAGAACG
ACGAAGTGCTGAACGAGTTCTTCGTGAAGGCAGGTGTCTCGGGAGTGGAG
CTAAAAGATCGGGACACCCCGCGCTTCATCTACGACTTCATACAGAGCAA
CAATGTCCTGGGCTTCGG
BO11956.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:34:05
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG1520-PA | 1584 | WASp-RA | 1..853 | 17..869 | 4240 | 99.8 | Plus |
CG1520-PB | 1584 | WASp-RB | 1..853 | 17..869 | 4240 | 99.8 | Plus |
CG1520-PC | 1485 | WASp-RC | 17..754 | 132..869 | 3665 | 99.8 | Plus |
CG1520-PA | 1584 | WASp-RA | 858..895 | 874..911 | 190 | 100 | Plus |
CG1520-PB | 1584 | WASp-RB | 858..895 | 874..911 | 190 | 100 | Plus |
CG1520-PC | 1485 | WASp-RC | 759..796 | 874..911 | 190 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 22:27:54
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
WASp-RD | 2734 | CG1520-RD | 207..1107 | 17..918 | 4425 | 99.6 | Plus |
WASp-RB | 2682 | CG1520-RB | 155..1055 | 17..918 | 4425 | 99.6 | Plus |
WASp-RA | 2794 | CG1520-RA | 267..1167 | 17..918 | 4425 | 99.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 22:27:48
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 28826325..28826874 | 911..362 | 2675 | 99.1 | Minus |
3R | 32079331 | 3R | 28826946..28827177 | 362..131 | 1160 | 100 | Minus |
3R | 32079331 | 3R | 28830502..28830618 | 133..17 | 585 | 100 | Minus |
Blast to na_te.dros performed 2015-02-10 22:27:51
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Max-element | 8556 | Max-element DME487856 8556bp Derived from AJ487856 (Rel. 71, Last updated, Version 1). | 7852..7919 | 577..643 | 130 | 67.6 | Plus |
BO11956.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:21:42 Download gff for
BO11956.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
WASp-PA | 1..901 | 17..918 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 04:51:31 Download gff for
BO11956.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1520-PB | 1..901 | 17..918 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-22 05:39:51 Download gff for
BO11956.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
WASp-RA | 267..1167 | 17..918 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 00:11:04 Download gff for
BO11956.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
WASp-RA | 267..1167 | 17..918 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 00:11:04 Download gff for
BO11956.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 28826947..28827174 | 134..361 | 100 | <- | Minus |
3R | 28830502..28830618 | 17..133 | 100 | | Minus |
3R | 28826319..28826874 | 362..918 | 99 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-22 05:39:51 Download gff for
BO11956.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 24652041..24652596 | 362..918 | 99 | <- | Minus |
arm_3R | 24652669..24652896 | 134..361 | 100 | <- | Minus |
arm_3R | 24656224..24656340 | 17..133 | 100 | | Minus |
BO11956.complete Sequence
1615 bp assembled on 2008-01-17
GenBank Submission: FJ632257
> BO11956.complete
GAAGTTATCAGTCGACATGAGCAGCGGAATGAGGTCGCAGGACGGTCCAC
GGGCGAAGGTCAATGCCGCCAGTACGCTGCTCACCCAGGAGGAGAATGAG
GCCGTCTTCAAGCTGCTGGGCAAGAAGTGCCAGACACTCAACACCGCCGT
GGTGCAGATCTACAAGACGGAGGGCAGCGCCCATGCCCACTGGAAGAAGC
GACACACCGGGGTGGTGTGCTTCGTCAAGGATAGCGCCATCCGATCCTAT
TTCATGCGCGCCTACTGCCTGATCAAGAACGAGCTAATCTGGGAGCACGA
GATCTACGATGGCATGGAGGTGGTCAAGTCGCGACCCTTTCTGCTTACCT
TCGAGGGCAGTGATGGTCATGTGGGACTAAACTTCGTGTCCGAGGAGGAG
TGCGACTCCTTCTTCCGCATTGTGGACGCCACCATAGAGACGCGTAACCG
CAAACGACAAGAGAAACGCAACCGGCAGAAAAGCCAACAGGCGCCCAATG
CTCCATTGCCTCAGGTGCAGCGGGAGCCGGCCAGGCCACCACCCATGCAA
GGTGGGTTGTCCTCCACGGACGGCGTTCAGCTGAGGAACAACAAGATCAA
CTCGGTGACACTGACGCCTGCACCAGCGCCAGCGCAGTCGAAGAATTTCC
TATCCAGTAGCTTTGGTCTGGGCAACAATGCGAAGGACAAGAAGCGCAAG
GTGACCAAGGCGGACATCAGCCGGCCGACAAACTTTGTACACCTCAGCCA
CGTGGGCTGGGATGCGCAGAAGGGATTTGATCTGGCGGGCAACGAGAACG
ACGAAGTGCTGAACGAGTTCTTCGTGAAGGCAGGTGTCTCGGAAGTGGAG
CTAAAAGATCGGGACACCCGCGCCTTCATCTACGACTTCATACAGAGCAA
CAATGTCCTGGCTTCGGTGAAGCAATACAGTGTAGAATCCCCTACGGAAA
CAGCGGCTCCCATGCCACCACCGGTGCCAACCCGTCATCCATCTAATGGC
AACCAAAGAACTGCTCCTCCGCTGCCGCCGGCAAGACAACCACCGCCCGC
AGTTCCCGTTACTGTGCCGGGCGCCGCACGAGCTCCTCCACCACCTAACA
GACCACCACCCATTAGCACCGCTCCACCACCGCCACCAGTCAGTGCGCCT
GTTGTGGCGCCGCCACCTCCACCACCGCCACCACCAGCAGCGGTGCCGCC
ACCACCGCCCCCGCCCATGCCAGTGGGAGAGATCCCCGTCATTACGACCA
CGCACGCACCGACTCAAGCAGCCCGGCCAGCAGCTCCGGCGGCTCCAGAT
CCACGCAATGCACTGATGGACGCCATACGCAAGGGAACCCAGCTGAAGAA
AGTGGACACGACTGCTCTCAGCACTGGAAGTGGCGACTCACGCAGCGATT
TAATGAAGGATATCCGTCAGGGCACTGTTTTGAAGCCGGCCAAGGAACGG
GAGCTGGGCAGTCAGCGAAACAGCGACAGTGGAGCAGGCACTGACGCATT
GGCCGATGCACTGCGTCGAGCGCTGGCGGCGCGTGGAAACGCCATCCACT
CGGATGAGGACGAAACCGAGTCCTCGGACAACGAAGGGGAGTGGGACGCA
AGCTTTCTAGACCAT
BO11956.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 23:34:44
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
WASp-RD | 1584 | CG1520-PD | 1..1581 | 17..1597 | 7905 | 100 | Plus |
WASp-RB | 1584 | CG1520-PB | 1..1581 | 17..1597 | 7905 | 100 | Plus |
WASp-RA | 1584 | CG1520-PA | 1..1581 | 17..1597 | 7905 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 23:34:45
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
WASp-RD | 2734 | CG1520-RD | 207..1787 | 17..1597 | 7905 | 100 | Plus |
WASp-RB | 2682 | CG1520-RB | 155..1735 | 17..1597 | 7905 | 100 | Plus |
WASp-RA | 2794 | CG1520-RA | 267..1847 | 17..1597 | 7905 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 23:34:42
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 28826242..28826874 | 994..362 | 3165 | 100 | Minus |
3R | 32079331 | 3R | 28825453..28825703 | 1597..1347 | 1255 | 100 | Minus |
3R | 32079331 | 3R | 28826946..28827177 | 362..131 | 1160 | 100 | Minus |
3R | 32079331 | 3R | 28825765..28825954 | 1348..1159 | 950 | 100 | Minus |
3R | 32079331 | 3R | 28826010..28826174 | 1159..995 | 825 | 100 | Minus |
3R | 32079331 | 3R | 28830502..28830618 | 133..17 | 585 | 100 | Minus |
Blast to na_te.dros performed 2014-11-27 23:34:43
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Max-element | 8556 | Max-element DME487856 8556bp Derived from AJ487856 (Rel. 71, Last updated, Version 1). | 7852..7919 | 577..643 | 130 | 67.6 | Plus |
BO11956.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 13:59:35 Download gff for
BO11956.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
WASp-RB | 1..1584 | 17..1601 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-07-28 15:32:56 Download gff for
BO11956.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
WASp-RB | 155..1735 | 17..1599 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:32:24 Download gff for
BO11956.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
WASp-RA | 267..1847 | 17..1599 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 13:59:35 Download gff for
BO11956.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
WASp-RB | 155..1739 | 17..1602 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:03:44 Download gff for
BO11956.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
WASp-RA | 267..1847 | 17..1599 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:03:44 Download gff for
BO11956.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 28830502..28830618 | 17..133 | 100 | | Minus |
3R | 28825451..28825701 | 1349..1599 | 99 | <- | Minus |
3R | 28825765..28825953 | 1160..1348 | 100 | <- | Minus |
3R | 28826010..28826174 | 995..1159 | 100 | <- | Minus |
3R | 28826242..28826874 | 362..994 | 100 | <- | Minus |
3R | 28826947..28827174 | 134..361 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:32:24 Download gff for
BO11956.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 24651173..24651423 | 1349..1599 | 99 | <- | Minus |
arm_3R | 24651487..24651675 | 1160..1348 | 100 | <- | Minus |
arm_3R | 24651732..24651896 | 995..1159 | 100 | <- | Minus |
arm_3R | 24651964..24652596 | 362..994 | 100 | <- | Minus |
arm_3R | 24652669..24652896 | 134..361 | 100 | <- | Minus |
arm_3R | 24656224..24656340 | 17..133 | 100 | | Minus |
BO11956.pep Sequence
Translation from 16 to 1615
> BO11956.pep
MSSGMRSQDGPRAKVNAASTLLTQEENEAVFKLLGKKCQTLNTAVVQIYK
TEGSAHAHWKKRHTGVVCFVKDSAIRSYFMRAYCLIKNELIWEHEIYDGM
EVVKSRPFLLTFEGSDGHVGLNFVSEEECDSFFRIVDATIETRNRKRQEK
RNRQKSQQAPNAPLPQVQREPARPPPMQGGLSSTDGVQLRNNKINSVTLT
PAPAPAQSKNFLSSSFGLGNNAKDKKRKVTKADISRPTNFVHLSHVGWDA
QKGFDLAGNENDEVLNEFFVKAGVSEVELKDRDTRAFIYDFIQSNNVLAS
VKQYSVESPTETAAPMPPPVPTRHPSNGNQRTAPPLPPARQPPPAVPVTV
PGAARAPPPPNRPPPISTAPPPPPVSAPVVAPPPPPPPPPAAVPPPPPPP
MPVGEIPVITTTHAPTQAARPAAPAAPDPRNALMDAIRKGTQLKKVDTTA
LSTGSGDSRSDLMKDIRQGTVLKPAKERELGSQRNSDSGAGTDALADALR
RALAARGNAIHSDEDETESSDNEGEWDASFLDH
BO11956.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 02:27:13
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
WASp-PD | 527 | CG1520-PD | 1..527 | 1..527 | 2771 | 100 | Plus |
WASp-PB | 527 | CG1520-PB | 1..527 | 1..527 | 2771 | 100 | Plus |
WASp-PA | 527 | CG1520-PA | 1..527 | 1..527 | 2771 | 100 | Plus |
WASp-PC | 494 | CG1520-PC | 3..494 | 36..527 | 2584 | 99.4 | Plus |
CG5514-PC | 1109 | CG5514-PC | 262..601 | 202..527 | 236 | 26.2 | Plus |