Clone Sequence Records
BO11958.5prime Sequence
494 bp (493 high quality bases) assembled on 2006-04-19
> BO11958.5prime
GAAGTTATCAGTCGACATGTTCGCATCTGTGGAATTAAGCTCATATCGCG
ATCAGCACTTCAAGGGCTCGCGCTCCGAGCAAGAGCGATCGCTCCGCGAC
TCGTGTACACTTTACGTGGGAAACTTGAGCTTCTACACCACCGAGGAGCA
GATCCACGAGCTCTTCTCCCGCTGCGGCGATGTTCGTGTGATTGTGATGG
GCCTGGACAAGTATAAGAAGACGCCCTGCGGCTTCTGCTTCGTGGAGTAC
TATGTCCGATCGGAGGCGGAGGCGGCCATGAGATTTGTGAATGGCACTCG
CTTGGACGACCGTCTGATTCGTGTGGACTGGGACGCCGGCTTCGTGGAGG
GCAGGCAGTATGGACGCGGCAAAACCGGCGGACAGGTGCGAGATGAATAC
CGCACGGATTACGATGCCGGCCGCGGGGGTTATGGCAAACTGTTGTCACA
GAAGATTGCACCCAACACGGACAATCGCGCAAGCTTTCTAGACC
BO11958.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:34:07
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG12357-PA | 465 | Cbp20-RA | 1..462 | 17..478 | 2310 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 20:06:17
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Cbp20-RA | 600 | CG12357-RA | 69..530 | 17..478 | 2310 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 20:06:15
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 18164830..18165049 | 63..282 | 1100 | 100 | Plus |
3R | 32079331 | 3R | 18165172..18165369 | 281..478 | 990 | 100 | Plus |
3R | 32079331 | 3R | 18164729..18164777 | 17..65 | 245 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-12 20:06:16 has no hits.
BO11958.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:21:46 Download gff for
BO11958.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Cbp20-PA | 1..465 | 17..479 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 04:51:36 Download gff for
BO11958.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12357-PA | 1..465 | 17..479 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 11:55:28 Download gff for
BO11958.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Cbp20-RA | 69..535 | 17..486 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 01:42:56 Download gff for
BO11958.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Cbp20-RA | 69..535 | 17..486 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 01:42:56 Download gff for
BO11958.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 18164832..18165049 | 65..282 | 100 | -> | Plus |
3R | 18165174..18165374 | 283..486 | 98 | | Plus |
3R | 18164729..18164776 | 17..64 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 11:55:28 Download gff for
BO11958.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 13990451..13990498 | 17..64 | 100 | -> | Plus |
arm_3R | 13990554..13990771 | 65..282 | 100 | -> | Plus |
arm_3R | 13990896..13991096 | 283..486 | 98 | | Plus |
BO11958.3prime Sequence
494 bp (493 high quality bases) assembled on 2006-04-19
> BO11958.3prime
ATGGTCTAGAAAGCTTGCGCGATTGTCCGTGTTGGGTGCAATCTTCTGTG
ACAACAGTTTGCCATAACCCCCGCGGCCGGCATCGTAATCCGTGCGGTAT
TCATCTCGCACCTGTCCGCCGGTTTTGCCGCGTCCATACTGCCTGCCCTC
CACGAAGCCGGCGTCCCAGTCCACACGAATCAGACGGTCGTCCAAGCGAG
TGCCATTCACAAATCTCATGGCCGCCTCCGCCTCCGATCGGACATAGTAC
TCCACGAAGCAGAAGCCGCAGGGCGTCTTCTTATACTTGTCCAGGCCCAT
CACAATCACACGAACATCGCCGCAGCGGGAGAAGAGCTCGTGGATCTGCT
CCTCGGTGGTGTAGAAGCTCAAGTTTCCCACGTAAAGTGTACACGAGTCG
CGGAGCGATCGCTCTTGCTCGGAGCGCGAGCCCTTGAAGTGCTGATCGCG
ATATGAGCTTAATTCCACAGATGCGAACATGTCGACTGATAACT
BO11958.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:34:07
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG12357-PA | 465 | Cbp20-RA | 1..462 | 480..19 | 2310 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 11:24:23
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Cbp20-RA | 600 | CG12357-RA | 69..530 | 480..19 | 2310 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 11:24:18
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 18164830..18165049 | 434..215 | 1100 | 100 | Minus |
3R | 32079331 | 3R | 18165172..18165369 | 216..19 | 990 | 100 | Minus |
3R | 32079331 | 3R | 18164729..18164777 | 480..432 | 245 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-11 11:24:21 has no hits.
BO11958.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:21:45 Download gff for
BO11958.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Cbp20-PA | 1..465 | 18..480 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 04:51:35 Download gff for
BO11958.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12357-PA | 1..465 | 18..480 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-24 08:39:25 Download gff for
BO11958.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Cbp20-RA | 69..535 | 11..480 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 12:53:31 Download gff for
BO11958.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Cbp20-RA | 69..535 | 11..480 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 12:53:31 Download gff for
BO11958.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 18164729..18164776 | 433..480 | 100 | -> | Minus |
3R | 18164832..18165049 | 215..432 | 100 | -> | Minus |
3R | 18165174..18165374 | 11..214 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 08:39:25 Download gff for
BO11958.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 13990451..13990498 | 433..480 | 100 | -> | Minus |
arm_3R | 13990554..13990771 | 215..432 | 100 | -> | Minus |
arm_3R | 13990896..13991096 | 11..214 | 98 | | Minus |
BO11958.complete Sequence
496 bp assembled on 2006-10-11
GenBank Submission: FJ632258
> BO11958.complete
GAAGTTATCAGTCGACATGTTCGCATCTGTGGAATTAAGCTCATATCGCG
ATCAGCACTTCAAGGGCTCGCGCTCCGAGCAAGAGCGATCGCTCCGCGAC
TCGTGTACACTTTACGTGGGAAACTTGAGCTTCTACACCACCGAGGAGCA
GATCCACGAGCTCTTCTCCCGCTGCGGCGATGTTCGTGTGATTGTGATGG
GCCTGGACAAGTATAAGAAGACGCCCTGCGGCTTCTGCTTCGTGGAGTAC
TATGTCCGATCGGAGGCGGAGGCGGCCATGAGATTTGTGAATGGCACTCG
CTTGGACGACCGTCTGATTCGTGTGGACTGGGACGCCGGCTTCGTGGAGG
GCAGGCAGTATGGACGCGGCAAAACCGGCGGACAGGTGCGAGATGAATAC
CGCACGGATTACGATGCCGGCCGCGGGGGTTATGGCAAACTGTTGTCACA
GAAGATTGCACCCAACACGGACAATCGCGCAAGCTTTCTAGACCAT
BO11958.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 14:25:18
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Cbp20-RA | 465 | CG12357-PA | 1..462 | 17..478 | 2310 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:25:19
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Cbp20-RA | 600 | CG12357-RA | 69..530 | 17..478 | 2310 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 14:25:16
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 18164830..18165049 | 63..282 | 1100 | 100 | Plus |
3R | 32079331 | 3R | 18165172..18165369 | 281..478 | 990 | 100 | Plus |
3R | 32079331 | 3R | 18164729..18164777 | 17..65 | 245 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 14:25:17 has no hits.
BO11958.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 21:48:59 Download gff for
BO11958.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Cbp20-RA | 1..465 | 17..479 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:03:52 Download gff for
BO11958.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Cbp20-RA | 67..533 | 17..486 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:42:37 Download gff for
BO11958.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Cbp20-RA | 74..530 | 22..480 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 21:48:59 Download gff for
BO11958.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Cbp20-RA | 67..533 | 17..486 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:11:08 Download gff for
BO11958.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Cbp20-RA | 74..530 | 22..480 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 15:11:08 Download gff for
BO11958.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 18165174..18165369 | 283..480 | 98 | | Plus |
3R | 18164734..18164776 | 22..64 | 100 | -> | Plus |
3R | 18164832..18165049 | 65..282 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:42:37 Download gff for
BO11958.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 13990456..13990498 | 22..64 | 100 | -> | Plus |
arm_3R | 13990554..13990771 | 65..282 | 100 | -> | Plus |
arm_3R | 13990896..13991091 | 283..480 | 98 | | Plus |
BO11958.pep Sequence
Translation from 16 to 496
> BO11958.pep
MFASVELSSYRDQHFKGSRSEQERSLRDSCTLYVGNLSFYTTEEQIHELF
SRCGDVRVIVMGLDKYKKTPCGFCFVEYYVRSEAEAAMRFVNGTRLDDRL
IRVDWDAGFVEGRQYGRGKTGGQVRDEYRTDYDAGRGGYGKLLSQKIAPN
TDNRASFLDH
BO11958.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 23:50:15
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Cbp20-PA | 154 | CG12357-PA | 1..154 | 1..154 | 819 | 100 | Plus |
SC35-PD | 195 | CG5442-PD | 24..96 | 31..103 | 144 | 39.7 | Plus |
SC35-PC | 195 | CG5442-PC | 24..96 | 31..103 | 144 | 39.7 | Plus |
SC35-PB | 195 | CG5442-PB | 24..96 | 31..103 | 144 | 39.7 | Plus |