Clone BO11958 Report

Search the DGRC for BO11958

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:119
Well:58
Vector:pDNR-Dual
Associated Gene/TranscriptCbp20-RA
Protein status:BO11958.pep: validated full length
Sequenced Size:496

Clone Sequence Records

BO11958.5prime Sequence

494 bp (493 high quality bases) assembled on 2006-04-19

> BO11958.5prime
GAAGTTATCAGTCGACATGTTCGCATCTGTGGAATTAAGCTCATATCGCG
ATCAGCACTTCAAGGGCTCGCGCTCCGAGCAAGAGCGATCGCTCCGCGAC
TCGTGTACACTTTACGTGGGAAACTTGAGCTTCTACACCACCGAGGAGCA
GATCCACGAGCTCTTCTCCCGCTGCGGCGATGTTCGTGTGATTGTGATGG
GCCTGGACAAGTATAAGAAGACGCCCTGCGGCTTCTGCTTCGTGGAGTAC
TATGTCCGATCGGAGGCGGAGGCGGCCATGAGATTTGTGAATGGCACTCG
CTTGGACGACCGTCTGATTCGTGTGGACTGGGACGCCGGCTTCGTGGAGG
GCAGGCAGTATGGACGCGGCAAAACCGGCGGACAGGTGCGAGATGAATAC
CGCACGGATTACGATGCCGGCCGCGGGGGTTATGGCAAACTGTTGTCACA
GAAGATTGCACCCAACACGGACAATCGCGCAAGCTTTCTAGACC

BO11958.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:34:07
Subject Length Description Subject Range Query Range Score Percent Strand
CG12357-PA 465 Cbp20-RA 1..462 17..478 2310 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 20:06:17
Subject Length Description Subject Range Query Range Score Percent Strand
Cbp20-RA 600 CG12357-RA 69..530 17..478 2310 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 20:06:15
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 18164830..18165049 63..282 1100 100 Plus
3R 32079331 3R 18165172..18165369 281..478 990 100 Plus
3R 32079331 3R 18164729..18164777 17..65 245 100 Plus
Blast to na_te.dros performed on 2015-02-12 20:06:16 has no hits.

BO11958.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:21:46 Download gff for BO11958.5prime
Subject Subject Range Query Range Percent Splice Strand
Cbp20-PA 1..465 17..479 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 04:51:36 Download gff for BO11958.5prime
Subject Subject Range Query Range Percent Splice Strand
CG12357-PA 1..465 17..479 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 11:55:28 Download gff for BO11958.5prime
Subject Subject Range Query Range Percent Splice Strand
Cbp20-RA 69..535 17..486 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 01:42:56 Download gff for BO11958.5prime
Subject Subject Range Query Range Percent Splice Strand
Cbp20-RA 69..535 17..486 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 01:42:56 Download gff for BO11958.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 18164832..18165049 65..282 100 -> Plus
3R 18165174..18165374 283..486 98   Plus
3R 18164729..18164776 17..64 100 -> Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 11:55:28 Download gff for BO11958.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 13990451..13990498 17..64 100 -> Plus
arm_3R 13990554..13990771 65..282 100 -> Plus
arm_3R 13990896..13991096 283..486 98   Plus

BO11958.3prime Sequence

494 bp (493 high quality bases) assembled on 2006-04-19

> BO11958.3prime
ATGGTCTAGAAAGCTTGCGCGATTGTCCGTGTTGGGTGCAATCTTCTGTG
ACAACAGTTTGCCATAACCCCCGCGGCCGGCATCGTAATCCGTGCGGTAT
TCATCTCGCACCTGTCCGCCGGTTTTGCCGCGTCCATACTGCCTGCCCTC
CACGAAGCCGGCGTCCCAGTCCACACGAATCAGACGGTCGTCCAAGCGAG
TGCCATTCACAAATCTCATGGCCGCCTCCGCCTCCGATCGGACATAGTAC
TCCACGAAGCAGAAGCCGCAGGGCGTCTTCTTATACTTGTCCAGGCCCAT
CACAATCACACGAACATCGCCGCAGCGGGAGAAGAGCTCGTGGATCTGCT
CCTCGGTGGTGTAGAAGCTCAAGTTTCCCACGTAAAGTGTACACGAGTCG
CGGAGCGATCGCTCTTGCTCGGAGCGCGAGCCCTTGAAGTGCTGATCGCG
ATATGAGCTTAATTCCACAGATGCGAACATGTCGACTGATAACT

BO11958.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:34:07
Subject Length Description Subject Range Query Range Score Percent Strand
CG12357-PA 465 Cbp20-RA 1..462 480..19 2310 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 11:24:23
Subject Length Description Subject Range Query Range Score Percent Strand
Cbp20-RA 600 CG12357-RA 69..530 480..19 2310 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 11:24:18
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 18164830..18165049 434..215 1100 100 Minus
3R 32079331 3R 18165172..18165369 216..19 990 100 Minus
3R 32079331 3R 18164729..18164777 480..432 245 100 Minus
Blast to na_te.dros performed on 2015-02-11 11:24:21 has no hits.

BO11958.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:21:45 Download gff for BO11958.3prime
Subject Subject Range Query Range Percent Splice Strand
Cbp20-PA 1..465 18..480 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 04:51:35 Download gff for BO11958.3prime
Subject Subject Range Query Range Percent Splice Strand
CG12357-PA 1..465 18..480 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-24 08:39:25 Download gff for BO11958.3prime
Subject Subject Range Query Range Percent Splice Strand
Cbp20-RA 69..535 11..480 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 12:53:31 Download gff for BO11958.3prime
Subject Subject Range Query Range Percent Splice Strand
Cbp20-RA 69..535 11..480 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 12:53:31 Download gff for BO11958.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 18164729..18164776 433..480 100 -> Minus
3R 18164832..18165049 215..432 100 -> Minus
3R 18165174..18165374 11..214 98   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 08:39:25 Download gff for BO11958.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 13990451..13990498 433..480 100 -> Minus
arm_3R 13990554..13990771 215..432 100 -> Minus
arm_3R 13990896..13991096 11..214 98   Minus

BO11958.complete Sequence

496 bp assembled on 2006-10-11

GenBank Submission: FJ632258

> BO11958.complete
GAAGTTATCAGTCGACATGTTCGCATCTGTGGAATTAAGCTCATATCGCG
ATCAGCACTTCAAGGGCTCGCGCTCCGAGCAAGAGCGATCGCTCCGCGAC
TCGTGTACACTTTACGTGGGAAACTTGAGCTTCTACACCACCGAGGAGCA
GATCCACGAGCTCTTCTCCCGCTGCGGCGATGTTCGTGTGATTGTGATGG
GCCTGGACAAGTATAAGAAGACGCCCTGCGGCTTCTGCTTCGTGGAGTAC
TATGTCCGATCGGAGGCGGAGGCGGCCATGAGATTTGTGAATGGCACTCG
CTTGGACGACCGTCTGATTCGTGTGGACTGGGACGCCGGCTTCGTGGAGG
GCAGGCAGTATGGACGCGGCAAAACCGGCGGACAGGTGCGAGATGAATAC
CGCACGGATTACGATGCCGGCCGCGGGGGTTATGGCAAACTGTTGTCACA
GAAGATTGCACCCAACACGGACAATCGCGCAAGCTTTCTAGACCAT

BO11958.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 14:25:18
Subject Length Description Subject Range Query Range Score Percent Strand
Cbp20-RA 465 CG12357-PA 1..462 17..478 2310 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:25:19
Subject Length Description Subject Range Query Range Score Percent Strand
Cbp20-RA 600 CG12357-RA 69..530 17..478 2310 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 14:25:16
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 18164830..18165049 63..282 1100 100 Plus
3R 32079331 3R 18165172..18165369 281..478 990 100 Plus
3R 32079331 3R 18164729..18164777 17..65 245 100 Plus
Blast to na_te.dros performed on 2014-11-27 14:25:17 has no hits.

BO11958.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 21:48:59 Download gff for BO11958.complete
Subject Subject Range Query Range Percent Splice Strand
Cbp20-RA 1..465 17..479 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:03:52 Download gff for BO11958.complete
Subject Subject Range Query Range Percent Splice Strand
Cbp20-RA 67..533 17..486 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:42:37 Download gff for BO11958.complete
Subject Subject Range Query Range Percent Splice Strand
Cbp20-RA 74..530 22..480 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 21:48:59 Download gff for BO11958.complete
Subject Subject Range Query Range Percent Splice Strand
Cbp20-RA 67..533 17..486 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:11:08 Download gff for BO11958.complete
Subject Subject Range Query Range Percent Splice Strand
Cbp20-RA 74..530 22..480 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 15:11:08 Download gff for BO11958.complete
Subject Subject Range Query Range Percent Splice Strand
3R 18165174..18165369 283..480 98   Plus
3R 18164734..18164776 22..64 100 -> Plus
3R 18164832..18165049 65..282 100 -> Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:42:37 Download gff for BO11958.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 13990456..13990498 22..64 100 -> Plus
arm_3R 13990554..13990771 65..282 100 -> Plus
arm_3R 13990896..13991091 283..480 98   Plus

BO11958.pep Sequence

Translation from 16 to 496

> BO11958.pep
MFASVELSSYRDQHFKGSRSEQERSLRDSCTLYVGNLSFYTTEEQIHELF
SRCGDVRVIVMGLDKYKKTPCGFCFVEYYVRSEAEAAMRFVNGTRLDDRL
IRVDWDAGFVEGRQYGRGKTGGQVRDEYRTDYDAGRGGYGKLLSQKIAPN
TDNRASFLDH

BO11958.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 23:50:15
Subject Length Description Subject Range Query Range Score Percent Strand
Cbp20-PA 154 CG12357-PA 1..154 1..154 819 100 Plus
SC35-PD 195 CG5442-PD 24..96 31..103 144 39.7 Plus
SC35-PC 195 CG5442-PC 24..96 31..103 144 39.7 Plus
SC35-PB 195 CG5442-PB 24..96 31..103 144 39.7 Plus