Clone Sequence Records
BO11960.3prime Sequence
913 bp (795 high quality bases) assembled on 2006-04-19
> BO11960.3prime
ATGGTCTAGAAAGCTTGCGATAATTGAATTCTCATGATTTCGCATTATTT
CCAGCATTCGATCCCACAAAAGTTCCCGGGCATCGATGCCCCAAATGAAA
TCCAAGTGGTTGAACTCCTTGTCGTCCACCAGATATTTCTCCACGACATT
GGGCAGCTTGCGGTTCAGCATTTCCACATCCTCCGGCGGAGCCAGCCAAT
CGTTTTGGCCATAATATAGTGCCACCTTGGCCCGAACATTCTCCAGGTGG
TAGGATGGCGGGTCAATGGTTCCGTAGATCCAGTGGTTTCTGAGCCATCC
GTGATCATACTGCCGGAAACCGCCAGATCTGTTGAGCTGTCCAAAATGCT
GCATCTGCTTGGTGGAGGCTCCGGCCGGAGAATGACCCACGATTACCGGC
AGCATAGTCTCGTTCAGCTGGAGCTTGTCGAATCCGGTGGTCAGGAAGAT
GACGTTTGAACAAATCTCTTTCGTAATAGTGGTCTCGTCGCAGATGATCC
GGTTGAACATGCTGATGAACTCATTCTTAGGCAAAAACTCGTGAACGCCA
ATCAGCTTGAGGACCAAGCTCACCGATAGATGCCACTCGGCCAGGAAGTT
GACCACCGGACTGCGGCAGTGCTTGAGGAATGCCACCGGTGCCAATCCCT
GCATCAGAATGATCTTGTCCATATACTCGGGCTTCTCGCTGGCCATGATC
CAGAACACAACGGTTCCCTGGGAGTGACCAATGTAGTGCAATTGGCTTAC
GCCCGTGGAATTGAGGATGTAGTCCATTGTGGCGGGTATATCATGCTTTC
CCATCTCGTGAAATGTAAAGTCCCAGAACTTGGCATGGTGGGTGCTATAC
TTAACATGCTTTCTCGAGTACGTATTGGCACCAACATTGGCCATCCAGAC
ATCGTACCCCTGA
BO11960.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:34:10
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6113-PA | 1305 | CG6113-RA | 408..1302 | 913..19 | 4400 | 99.6 | Minus |
CG18301-PA | 1269 | CG18301-RA | 505..531 | 741..715 | 135 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:00:16
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Lip4-RC | 1936 | CG6113-RC | 668..1562 | 913..19 | 4430 | 99.7 | Minus |
Lip4-RA | 1580 | CG6113-RA | 530..1424 | 913..19 | 4430 | 99.7 | Minus |
Lip4-RB | 1861 | CG6113-RB | 817..1705 | 913..19 | 4330 | 99 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 23:00:09
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 10530856..10531404 | 567..19 | 2745 | 100 | Minus |
2L | 23513712 | 2L | 10530330..10530675 | 913..568 | 1685 | 99.1 | Minus |
2L | 23513712 | 2L | 10532757..10532872 | 741..626 | 280 | 82.8 | Minus |
2L | 23513712 | 2L | 10533301..10533416 | 246..131 | 250 | 81 | Minus |
Blast to na_te.dros performed on 2015-02-10 23:00:12 has no hits.
BO11960.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:21:48 Download gff for
BO11960.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6113-PA | 409..1305 | 15..912 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 04:51:40 Download gff for
BO11960.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6113-PA | 409..1305 | 15..912 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 09:51:07 Download gff for
BO11960.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Lip4-RA | 531..1429 | 14..912 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 00:21:30 Download gff for
BO11960.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Lip4-RA | 531..1429 | 14..912 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 00:21:30 Download gff for
BO11960.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 10530331..10530675 | 568..912 | 99 | -> | Minus |
2L | 10530856..10531409 | 14..567 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 09:51:07 Download gff for
BO11960.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 10530331..10530675 | 568..912 | 99 | -> | Minus |
arm_2L | 10530856..10531409 | 14..567 | 99 | | Minus |
BO11960.5prime Sequence
846 bp (806 high quality bases) assembled on 2006-04-19
> BO11960.5prime
GAAGTTATCAGTCGACATGTCGGTGAAATTGCTAATTGTAGCGCTTAGTT
TGTGCCTCCTGCAGTCGGGCATCGTCGAGGGTATATCATTATCACTCGGA
GATATAACCCTCTTTAATGTTAACTTCAAAACACCAACTTTTTTGGGAAG
ATCCGTGGCGGTGGATAGCAATGTGCGGTTGGAGAACGATGTGGATCCCA
ATATTCAGGAGGATTCACACTTGAATACCTACAGTCTGATAAAAAAGTAC
GGCTACCCGGCGGAGAATCACACCTTGGAGACGGATGATGGATACATCCT
CACCTTGCACAGGATCGCTAGACCGGGAGCAACGCCAGTGCTTCTGGTGC
ACGGACTACTGGATAGCTCAGCCACTTGGGTGATGATGGGACCGAACAAG
GGACTTGGTTACCTGCTCTACGATCAGGGGTACGATGTCTGGATGGCCAA
TGTTCGTGGCAATACGTACTCGAGAAAGCATGTTAAGTATAGCACCCACC
ATGCCAAGTTCTGGGACTTTACATTCCACGAGATGGGAAAGCATGATATA
CCCGCCACAATGGACTACATCCTCAATTCCACGGGCGTAAGCCAATTGCA
CTACATTGGTCACTCCCAGGGAACCGTTGTGTTCTGGATCATGGCCAGCG
AGAAGCCCGAGTATATGGACAAGATCATTCTGATGCAGGGATTGGCACCG
GTGGCATTCCTCAAGCACTGCCGCAGTCCGGTGGTCAACTTCCTGGCCGA
GTGGCATCTATCGGTGAGCTTGGTCCTCAAGCTGATTGGCGTTCACGAGT
TTTTGCCTAAGAATGAGTTCATCAGCATGTTCAACCGGATCATCTG
BO11960.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:34:10
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6113-PA | 1305 | CG6113-RA | 1..830 | 17..846 | 4150 | 100 | Plus |
CG18301-PA | 1269 | CG18301-RA | 505..531 | 596..622 | 135 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 22:32:45
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Lip4-RA | 1580 | CG6113-RA | 123..952 | 17..846 | 4150 | 100 | Plus |
Lip4-RB | 1861 | CG6113-RB | 410..1233 | 17..846 | 4050 | 99.3 | Plus |
Lip4-RC | 1936 | CG6113-RC | 285..1090 | 41..846 | 4030 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 22:32:40
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 10530313..10530675 | 407..769 | 1815 | 100 | Plus |
2L | 23513712 | 2L | 10529537..10529749 | 17..229 | 1065 | 100 | Plus |
2L | 23513712 | 2L | 10530078..10530257 | 230..409 | 900 | 100 | Plus |
2L | 23513712 | 2L | 10530856..10530932 | 770..846 | 385 | 100 | Plus |
2L | 23513712 | 2L | 10532757..10532872 | 596..711 | 280 | 82.8 | Plus |
Blast to na_te.dros performed on 2015-02-10 22:32:43 has no hits.
BO11960.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:21:49 Download gff for
BO11960.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6113-PA | 1..830 | 17..846 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 04:51:42 Download gff for
BO11960.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6113-PA | 1..830 | 17..846 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-22 05:40:55 Download gff for
BO11960.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Lip4-RA | 123..952 | 17..846 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 00:12:07 Download gff for
BO11960.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Lip4-RA | 123..952 | 17..846 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 00:12:07 Download gff for
BO11960.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 10529537..10529749 | 17..229 | 100 | -> | Plus |
2L | 10530078..10530255 | 230..407 | 100 | -> | Plus |
2L | 10530314..10530675 | 408..769 | 100 | -> | Plus |
2L | 10530856..10530932 | 770..846 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-22 05:40:55 Download gff for
BO11960.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 10529537..10529749 | 17..229 | 100 | -> | Plus |
arm_2L | 10530078..10530255 | 230..407 | 100 | -> | Plus |
arm_2L | 10530314..10530675 | 408..769 | 100 | -> | Plus |
arm_2L | 10530856..10530932 | 770..846 | 100 | | Plus |
BO11960.complete Sequence
1336 bp assembled on 2006-10-11
GenBank Submission: FJ632259
> BO11960.complete
GAAGTTATCAGTCGACATGTCGGTGAAATTGCTAATTGTAGCGCTTAGTT
TGTGCCTCCTGCAGTCGGGCATCGTCGAGGGTATATCATTATCACTCGGA
GATATAACCCTCTTTAATGTTAACTTCAAAACACCAACTTTTTTGGGAAG
ATCCGTGGCGGTGGATAGCAATGTGCGGTTGGAGAACGATGTGGATCCCA
ATATTCAGGAGGATTCACACTTGAATACCTACAGTCTGATAAAAAAGTAC
GGCTACCCGGCGGAGAATCACACCTTGGAGACGGATGATGGATACATCCT
CACCTTGCACAGGATCGCTAGACCGGGAGCAACGCCAGTGCTTCTGGTGC
ACGGACTACTGGATAGCTCAGCCACTTGGGTGATGATGGGACCGAACAAG
GGACTTGGTTACCTGCTCTACGATCAGGGGTACGATGTCTGGATGGCCAA
TGTTCGTGGCAATACGTACTCGAGAAAGCATGTTAAGTATAGCACCCACC
ATGCCAAGTTCTGGGACTTTACATTCCACGAGATGGGAAAGCATGATATA
CCCGCCACAATGGACTACATCCTCAATTCCACGGGCGTAAGCCAATTGCA
CTACATTGGTCACTCCCAGGGAACCGTTGTGTTCTGGATCATGGCCAGCG
AGAAGCCCGAGTATATGGACAAGATCATTCTGATGCAGGGATTGGCACCG
GTGGCATTCCTCAAGCACTGCCGCAGTCCGGTGGTCAACTTCCTGGCCGA
GTGGCATCTATCGGTGAGCTTGGTCCTCAAGCTGATTGGCGTTCACGAGT
TTTTGCCTAAGAATGAGTTCATCAGCATGTTCAACCGGATCATCTGCGAC
GAGACCACTATTACGAAAGAGATTTGTTCAAACGTCATCTTCCTGACCAC
CGGATTCGACAAGCTCCAGCTGAACGAGACTATGCTGCCGGTAATCGTGG
GTCATTCTCCGGCCGGAGCCTCCACCAAGCAGATGCAGCATTTTGGACAG
CTCAACAGATCTGGCGGTTTCCGGCAGTATGATCACGGATGGCTCAGAAA
CCACTGGATCTACGGAACCATTGACCCGCCATCCTACCACCTGGAGAATG
TTCGGGCCAAGGTGGCACTATATTATGGCCAAAACGATTGGCTGGCTCCG
CCGGAGGATGTGGAAATGCTGAACCGCAAGCTGCCCAATGTCGTGGAGAA
ATATCTGGTGGACGACAAGGAGTTCAACCACTTGGATTTCATTTGGGGCA
TCGATGCCCGGGAACTTTTGTGGGATCGAATGCTGGAAATAATGCGAAAT
CATGAGAATTCAATTATCGCAAGCTTTCTAGACCAT
BO11960.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 14:28:50
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Lip4-RA | 1305 | CG6113-PA | 1..1302 | 17..1318 | 6510 | 100 | Plus |
Lip4-RC | 1347 | CG6113-PC | 67..1344 | 41..1318 | 6390 | 100 | Plus |
Lip4-RB | 1299 | CG6113-PB | 1..1296 | 17..1318 | 6385 | 99.5 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:28:51
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Lip4-RA | 1580 | CG6113-RA | 123..1424 | 17..1318 | 6510 | 100 | Plus |
Lip4-RC | 1936 | CG6113-RC | 285..1562 | 41..1318 | 6390 | 100 | Plus |
Lip4-RB | 1861 | CG6113-RB | 410..1705 | 17..1318 | 6385 | 99.5 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 14:28:48
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 10530856..10531404 | 770..1318 | 2745 | 100 | Plus |
2L | 23513712 | 2L | 10530313..10530675 | 407..769 | 1815 | 100 | Plus |
2L | 23513712 | 2L | 10529537..10529749 | 17..229 | 1065 | 100 | Plus |
2L | 23513712 | 2L | 10530078..10530257 | 230..409 | 900 | 100 | Plus |
2L | 23513712 | 2L | 10532757..10532872 | 596..711 | 280 | 82.8 | Plus |
2L | 23513712 | 2L | 10533301..10533416 | 1091..1206 | 250 | 81 | Plus |
Blast to na_te.dros performed on 2014-11-27 14:28:49 has no hits.
BO11960.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 21:49:00 Download gff for
BO11960.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6113-RA | 1..1305 | 17..1322 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:03:54 Download gff for
BO11960.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Lip4-RA | 121..1427 | 17..1323 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:44:15 Download gff for
BO11960.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Lip4-RA | 123..1424 | 17..1320 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 21:49:00 Download gff for
BO11960.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6113-RA | 121..1427 | 17..1323 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:12:36 Download gff for
BO11960.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Lip4-RA | 123..1424 | 17..1320 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 15:12:36 Download gff for
BO11960.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 10530078..10530255 | 230..407 | 100 | -> | Plus |
2L | 10529537..10529749 | 17..229 | 100 | -> | Plus |
2L | 10530314..10530675 | 408..769 | 100 | -> | Plus |
2L | 10530856..10531404 | 770..1320 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:44:15 Download gff for
BO11960.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 10529537..10529749 | 17..229 | 100 | -> | Plus |
arm_2L | 10530078..10530255 | 230..407 | 100 | -> | Plus |
arm_2L | 10530314..10530675 | 408..769 | 100 | -> | Plus |
arm_2L | 10530856..10531404 | 770..1320 | 99 | | Plus |
BO11960.pep Sequence
Translation from 16 to 1336
> BO11960.pep
MSVKLLIVALSLCLLQSGIVEGISLSLGDITLFNVNFKTPTFLGRSVAVD
SNVRLENDVDPNIQEDSHLNTYSLIKKYGYPAENHTLETDDGYILTLHRI
ARPGATPVLLVHGLLDSSATWVMMGPNKGLGYLLYDQGYDVWMANVRGNT
YSRKHVKYSTHHAKFWDFTFHEMGKHDIPATMDYILNSTGVSQLHYIGHS
QGTVVFWIMASEKPEYMDKIILMQGLAPVAFLKHCRSPVVNFLAEWHLSV
SLVLKLIGVHEFLPKNEFISMFNRIICDETTITKEICSNVIFLTTGFDKL
QLNETMLPVIVGHSPAGASTKQMQHFGQLNRSGGFRQYDHGWLRNHWIYG
TIDPPSYHLENVRAKVALYYGQNDWLAPPEDVEMLNRKLPNVVEKYLVDD
KEFNHLDFIWGIDARELLWDRMLEIMRNHENSIIASFLDH
BO11960.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 23:49:45
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Lip4-PA | 434 | CG6113-PA | 1..434 | 1..434 | 2321 | 100 | Plus |
Lip4-PB | 432 | CG6113-PB | 1..432 | 1..434 | 2300 | 99.5 | Plus |
Lip4-PC | 448 | CG6113-PC | 17..448 | 3..434 | 2293 | 98.8 | Plus |
CG18301-PA | 422 | CG18301-PA | 34..401 | 59..428 | 1271 | 60 | Plus |
CG31871-PA | 531 | CG31871-PA | 10..439 | 4..431 | 1097 | 46.4 | Plus |