Clone BO11960 Report

Search the DGRC for BO11960

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:119
Well:60
Vector:pDNR-Dual
Associated Gene/TranscriptLip4-RA
Protein status:BO11960.pep: validated full length
Sequenced Size:1336

Clone Sequence Records

BO11960.3prime Sequence

913 bp (795 high quality bases) assembled on 2006-04-19

> BO11960.3prime
ATGGTCTAGAAAGCTTGCGATAATTGAATTCTCATGATTTCGCATTATTT
CCAGCATTCGATCCCACAAAAGTTCCCGGGCATCGATGCCCCAAATGAAA
TCCAAGTGGTTGAACTCCTTGTCGTCCACCAGATATTTCTCCACGACATT
GGGCAGCTTGCGGTTCAGCATTTCCACATCCTCCGGCGGAGCCAGCCAAT
CGTTTTGGCCATAATATAGTGCCACCTTGGCCCGAACATTCTCCAGGTGG
TAGGATGGCGGGTCAATGGTTCCGTAGATCCAGTGGTTTCTGAGCCATCC
GTGATCATACTGCCGGAAACCGCCAGATCTGTTGAGCTGTCCAAAATGCT
GCATCTGCTTGGTGGAGGCTCCGGCCGGAGAATGACCCACGATTACCGGC
AGCATAGTCTCGTTCAGCTGGAGCTTGTCGAATCCGGTGGTCAGGAAGAT
GACGTTTGAACAAATCTCTTTCGTAATAGTGGTCTCGTCGCAGATGATCC
GGTTGAACATGCTGATGAACTCATTCTTAGGCAAAAACTCGTGAACGCCA
ATCAGCTTGAGGACCAAGCTCACCGATAGATGCCACTCGGCCAGGAAGTT
GACCACCGGACTGCGGCAGTGCTTGAGGAATGCCACCGGTGCCAATCCCT
GCATCAGAATGATCTTGTCCATATACTCGGGCTTCTCGCTGGCCATGATC
CAGAACACAACGGTTCCCTGGGAGTGACCAATGTAGTGCAATTGGCTTAC
GCCCGTGGAATTGAGGATGTAGTCCATTGTGGCGGGTATATCATGCTTTC
CCATCTCGTGAAATGTAAAGTCCCAGAACTTGGCATGGTGGGTGCTATAC
TTAACATGCTTTCTCGAGTACGTATTGGCACCAACATTGGCCATCCAGAC
ATCGTACCCCTGA

BO11960.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:34:10
Subject Length Description Subject Range Query Range Score Percent Strand
CG6113-PA 1305 CG6113-RA 408..1302 913..19 4400 99.6 Minus
CG18301-PA 1269 CG18301-RA 505..531 741..715 135 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:00:16
Subject Length Description Subject Range Query Range Score Percent Strand
Lip4-RC 1936 CG6113-RC 668..1562 913..19 4430 99.7 Minus
Lip4-RA 1580 CG6113-RA 530..1424 913..19 4430 99.7 Minus
Lip4-RB 1861 CG6113-RB 817..1705 913..19 4330 99 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 23:00:09
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 10530856..10531404 567..19 2745 100 Minus
2L 23513712 2L 10530330..10530675 913..568 1685 99.1 Minus
2L 23513712 2L 10532757..10532872 741..626 280 82.8 Minus
2L 23513712 2L 10533301..10533416 246..131 250 81 Minus
Blast to na_te.dros performed on 2015-02-10 23:00:12 has no hits.

BO11960.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:21:48 Download gff for BO11960.3prime
Subject Subject Range Query Range Percent Splice Strand
CG6113-PA 409..1305 15..912 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 04:51:40 Download gff for BO11960.3prime
Subject Subject Range Query Range Percent Splice Strand
CG6113-PA 409..1305 15..912 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 09:51:07 Download gff for BO11960.3prime
Subject Subject Range Query Range Percent Splice Strand
Lip4-RA 531..1429 14..912 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 00:21:30 Download gff for BO11960.3prime
Subject Subject Range Query Range Percent Splice Strand
Lip4-RA 531..1429 14..912 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 00:21:30 Download gff for BO11960.3prime
Subject Subject Range Query Range Percent Splice Strand
2L 10530331..10530675 568..912 99 -> Minus
2L 10530856..10531409 14..567 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 09:51:07 Download gff for BO11960.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 10530331..10530675 568..912 99 -> Minus
arm_2L 10530856..10531409 14..567 99   Minus

BO11960.5prime Sequence

846 bp (806 high quality bases) assembled on 2006-04-19

> BO11960.5prime
GAAGTTATCAGTCGACATGTCGGTGAAATTGCTAATTGTAGCGCTTAGTT
TGTGCCTCCTGCAGTCGGGCATCGTCGAGGGTATATCATTATCACTCGGA
GATATAACCCTCTTTAATGTTAACTTCAAAACACCAACTTTTTTGGGAAG
ATCCGTGGCGGTGGATAGCAATGTGCGGTTGGAGAACGATGTGGATCCCA
ATATTCAGGAGGATTCACACTTGAATACCTACAGTCTGATAAAAAAGTAC
GGCTACCCGGCGGAGAATCACACCTTGGAGACGGATGATGGATACATCCT
CACCTTGCACAGGATCGCTAGACCGGGAGCAACGCCAGTGCTTCTGGTGC
ACGGACTACTGGATAGCTCAGCCACTTGGGTGATGATGGGACCGAACAAG
GGACTTGGTTACCTGCTCTACGATCAGGGGTACGATGTCTGGATGGCCAA
TGTTCGTGGCAATACGTACTCGAGAAAGCATGTTAAGTATAGCACCCACC
ATGCCAAGTTCTGGGACTTTACATTCCACGAGATGGGAAAGCATGATATA
CCCGCCACAATGGACTACATCCTCAATTCCACGGGCGTAAGCCAATTGCA
CTACATTGGTCACTCCCAGGGAACCGTTGTGTTCTGGATCATGGCCAGCG
AGAAGCCCGAGTATATGGACAAGATCATTCTGATGCAGGGATTGGCACCG
GTGGCATTCCTCAAGCACTGCCGCAGTCCGGTGGTCAACTTCCTGGCCGA
GTGGCATCTATCGGTGAGCTTGGTCCTCAAGCTGATTGGCGTTCACGAGT
TTTTGCCTAAGAATGAGTTCATCAGCATGTTCAACCGGATCATCTG

BO11960.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:34:10
Subject Length Description Subject Range Query Range Score Percent Strand
CG6113-PA 1305 CG6113-RA 1..830 17..846 4150 100 Plus
CG18301-PA 1269 CG18301-RA 505..531 596..622 135 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 22:32:45
Subject Length Description Subject Range Query Range Score Percent Strand
Lip4-RA 1580 CG6113-RA 123..952 17..846 4150 100 Plus
Lip4-RB 1861 CG6113-RB 410..1233 17..846 4050 99.3 Plus
Lip4-RC 1936 CG6113-RC 285..1090 41..846 4030 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 22:32:40
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 10530313..10530675 407..769 1815 100 Plus
2L 23513712 2L 10529537..10529749 17..229 1065 100 Plus
2L 23513712 2L 10530078..10530257 230..409 900 100 Plus
2L 23513712 2L 10530856..10530932 770..846 385 100 Plus
2L 23513712 2L 10532757..10532872 596..711 280 82.8 Plus
Blast to na_te.dros performed on 2015-02-10 22:32:43 has no hits.

BO11960.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:21:49 Download gff for BO11960.5prime
Subject Subject Range Query Range Percent Splice Strand
CG6113-PA 1..830 17..846 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 04:51:42 Download gff for BO11960.5prime
Subject Subject Range Query Range Percent Splice Strand
CG6113-PA 1..830 17..846 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-22 05:40:55 Download gff for BO11960.5prime
Subject Subject Range Query Range Percent Splice Strand
Lip4-RA 123..952 17..846 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 00:12:07 Download gff for BO11960.5prime
Subject Subject Range Query Range Percent Splice Strand
Lip4-RA 123..952 17..846 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 00:12:07 Download gff for BO11960.5prime
Subject Subject Range Query Range Percent Splice Strand
2L 10529537..10529749 17..229 100 -> Plus
2L 10530078..10530255 230..407 100 -> Plus
2L 10530314..10530675 408..769 100 -> Plus
2L 10530856..10530932 770..846 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-22 05:40:55 Download gff for BO11960.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 10529537..10529749 17..229 100 -> Plus
arm_2L 10530078..10530255 230..407 100 -> Plus
arm_2L 10530314..10530675 408..769 100 -> Plus
arm_2L 10530856..10530932 770..846 100   Plus

BO11960.complete Sequence

1336 bp assembled on 2006-10-11

GenBank Submission: FJ632259

> BO11960.complete
GAAGTTATCAGTCGACATGTCGGTGAAATTGCTAATTGTAGCGCTTAGTT
TGTGCCTCCTGCAGTCGGGCATCGTCGAGGGTATATCATTATCACTCGGA
GATATAACCCTCTTTAATGTTAACTTCAAAACACCAACTTTTTTGGGAAG
ATCCGTGGCGGTGGATAGCAATGTGCGGTTGGAGAACGATGTGGATCCCA
ATATTCAGGAGGATTCACACTTGAATACCTACAGTCTGATAAAAAAGTAC
GGCTACCCGGCGGAGAATCACACCTTGGAGACGGATGATGGATACATCCT
CACCTTGCACAGGATCGCTAGACCGGGAGCAACGCCAGTGCTTCTGGTGC
ACGGACTACTGGATAGCTCAGCCACTTGGGTGATGATGGGACCGAACAAG
GGACTTGGTTACCTGCTCTACGATCAGGGGTACGATGTCTGGATGGCCAA
TGTTCGTGGCAATACGTACTCGAGAAAGCATGTTAAGTATAGCACCCACC
ATGCCAAGTTCTGGGACTTTACATTCCACGAGATGGGAAAGCATGATATA
CCCGCCACAATGGACTACATCCTCAATTCCACGGGCGTAAGCCAATTGCA
CTACATTGGTCACTCCCAGGGAACCGTTGTGTTCTGGATCATGGCCAGCG
AGAAGCCCGAGTATATGGACAAGATCATTCTGATGCAGGGATTGGCACCG
GTGGCATTCCTCAAGCACTGCCGCAGTCCGGTGGTCAACTTCCTGGCCGA
GTGGCATCTATCGGTGAGCTTGGTCCTCAAGCTGATTGGCGTTCACGAGT
TTTTGCCTAAGAATGAGTTCATCAGCATGTTCAACCGGATCATCTGCGAC
GAGACCACTATTACGAAAGAGATTTGTTCAAACGTCATCTTCCTGACCAC
CGGATTCGACAAGCTCCAGCTGAACGAGACTATGCTGCCGGTAATCGTGG
GTCATTCTCCGGCCGGAGCCTCCACCAAGCAGATGCAGCATTTTGGACAG
CTCAACAGATCTGGCGGTTTCCGGCAGTATGATCACGGATGGCTCAGAAA
CCACTGGATCTACGGAACCATTGACCCGCCATCCTACCACCTGGAGAATG
TTCGGGCCAAGGTGGCACTATATTATGGCCAAAACGATTGGCTGGCTCCG
CCGGAGGATGTGGAAATGCTGAACCGCAAGCTGCCCAATGTCGTGGAGAA
ATATCTGGTGGACGACAAGGAGTTCAACCACTTGGATTTCATTTGGGGCA
TCGATGCCCGGGAACTTTTGTGGGATCGAATGCTGGAAATAATGCGAAAT
CATGAGAATTCAATTATCGCAAGCTTTCTAGACCAT

BO11960.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 14:28:50
Subject Length Description Subject Range Query Range Score Percent Strand
Lip4-RA 1305 CG6113-PA 1..1302 17..1318 6510 100 Plus
Lip4-RC 1347 CG6113-PC 67..1344 41..1318 6390 100 Plus
Lip4-RB 1299 CG6113-PB 1..1296 17..1318 6385 99.5 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:28:51
Subject Length Description Subject Range Query Range Score Percent Strand
Lip4-RA 1580 CG6113-RA 123..1424 17..1318 6510 100 Plus
Lip4-RC 1936 CG6113-RC 285..1562 41..1318 6390 100 Plus
Lip4-RB 1861 CG6113-RB 410..1705 17..1318 6385 99.5 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 14:28:48
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 10530856..10531404 770..1318 2745 100 Plus
2L 23513712 2L 10530313..10530675 407..769 1815 100 Plus
2L 23513712 2L 10529537..10529749 17..229 1065 100 Plus
2L 23513712 2L 10530078..10530257 230..409 900 100 Plus
2L 23513712 2L 10532757..10532872 596..711 280 82.8 Plus
2L 23513712 2L 10533301..10533416 1091..1206 250 81 Plus
Blast to na_te.dros performed on 2014-11-27 14:28:49 has no hits.

BO11960.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 21:49:00 Download gff for BO11960.complete
Subject Subject Range Query Range Percent Splice Strand
CG6113-RA 1..1305 17..1322 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:03:54 Download gff for BO11960.complete
Subject Subject Range Query Range Percent Splice Strand
Lip4-RA 121..1427 17..1323 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:44:15 Download gff for BO11960.complete
Subject Subject Range Query Range Percent Splice Strand
Lip4-RA 123..1424 17..1320 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 21:49:00 Download gff for BO11960.complete
Subject Subject Range Query Range Percent Splice Strand
CG6113-RA 121..1427 17..1323 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:12:36 Download gff for BO11960.complete
Subject Subject Range Query Range Percent Splice Strand
Lip4-RA 123..1424 17..1320 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 15:12:36 Download gff for BO11960.complete
Subject Subject Range Query Range Percent Splice Strand
2L 10530078..10530255 230..407 100 -> Plus
2L 10529537..10529749 17..229 100 -> Plus
2L 10530314..10530675 408..769 100 -> Plus
2L 10530856..10531404 770..1320 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:44:15 Download gff for BO11960.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 10529537..10529749 17..229 100 -> Plus
arm_2L 10530078..10530255 230..407 100 -> Plus
arm_2L 10530314..10530675 408..769 100 -> Plus
arm_2L 10530856..10531404 770..1320 99   Plus

BO11960.pep Sequence

Translation from 16 to 1336

> BO11960.pep
MSVKLLIVALSLCLLQSGIVEGISLSLGDITLFNVNFKTPTFLGRSVAVD
SNVRLENDVDPNIQEDSHLNTYSLIKKYGYPAENHTLETDDGYILTLHRI
ARPGATPVLLVHGLLDSSATWVMMGPNKGLGYLLYDQGYDVWMANVRGNT
YSRKHVKYSTHHAKFWDFTFHEMGKHDIPATMDYILNSTGVSQLHYIGHS
QGTVVFWIMASEKPEYMDKIILMQGLAPVAFLKHCRSPVVNFLAEWHLSV
SLVLKLIGVHEFLPKNEFISMFNRIICDETTITKEICSNVIFLTTGFDKL
QLNETMLPVIVGHSPAGASTKQMQHFGQLNRSGGFRQYDHGWLRNHWIYG
TIDPPSYHLENVRAKVALYYGQNDWLAPPEDVEMLNRKLPNVVEKYLVDD
KEFNHLDFIWGIDARELLWDRMLEIMRNHENSIIASFLDH

BO11960.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 23:49:45
Subject Length Description Subject Range Query Range Score Percent Strand
Lip4-PA 434 CG6113-PA 1..434 1..434 2321 100 Plus
Lip4-PB 432 CG6113-PB 1..432 1..434 2300 99.5 Plus
Lip4-PC 448 CG6113-PC 17..448 3..434 2293 98.8 Plus
CG18301-PA 422 CG18301-PA 34..401 59..428 1271 60 Plus
CG31871-PA 531 CG31871-PA 10..439 4..431 1097 46.4 Plus