Clone Sequence Records
BO11961.3prime Sequence
847 bp (786 high quality bases) assembled on 2006-04-19
> BO11961.3prime
ATGGTCTAGAAAGCTTGCGGAGGCAAAGGAGTAGGCCGGCAACGATGACT
TTTCTACTATGTTCAGTGCCTTGATGGTGTCCAGCGCCTGTTGTTGACTG
CTCAGCCCGAATACATCAAAGGCGCTCAGATTAAACTTGCTCAGTCGATC
GCCCGAAATGGCCTGCAGAAACTTGTAGTAGCTGGGGCGCAGGCTCTTGG
GTTCCAATATTCCCGCATGGAAAAGCACAGCCGTGAAAAAGGAGTACAAG
AAAAGCATAAAGTTGGGGATGTGTGGCACAATACCATGTTCTTGGCCCTT
TGTGCAAAGAATCTGTAGCGCCTTCCACATAACATACAGGGCTACCGTGT
TATCCGGATACTGGGTGAAGGATATAGAGGCAATTAACGACGCTGGAATT
GCAAATCTGGCATCGTCCCGGTTAAAACTGTGCCGCAGCAGGCAGGACAC
CGACTTATAGAGAAATGAAAAGCTGCCCATGAAGATGCCCAGTTGTAGAG
TACCACGGTTGAAGATCATCTTCTTCCACGGCATTTTTCCAGCCGTAATT
CGTTTGACGTTCATGACCAGCTTAAGGGCAACCTGAAGACCCACTCCACC
CACAAAGGGTTTAATTCCACCCATCAGGGAGTATCCAATGCAGCTCTGTT
GATGCCGACAGCTTTCGTGTTTTGCGCGAATGAGATTGCTGTACACGCGC
ACCCAGTCGGATACAGTCGAAAAACTGACGGTGGGACGTCGGCGGTCTGG
CGCAGGCTGCTCACCGGGCACTGCGGGCCCGGACTTGACAATCGGCCCCG
CCTCCTCCTTGCCCACGAAAATGCGAAGGATGTTGAAGATGGAATCC
BO11961.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:34:11
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG11737-PA | 1368 | CG11737-RA | 537..1365 | 847..19 | 4145 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 04:51:49
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG11737-RC | 1731 | CG11737-RC | 680..1508 | 847..19 | 4145 | 100 | Minus |
CG11737-RB | 1800 | CG11737-RB | 749..1577 | 847..19 | 4145 | 100 | Minus |
CG11737-RA | 2126 | CG11737-RA | 1075..1903 | 847..19 | 4145 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 04:51:44
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 8520156..8520549 | 847..454 | 1970 | 100 | Minus |
3R | 32079331 | 3R | 8520800..8520968 | 314..146 | 845 | 100 | Minus |
3R | 32079331 | 3R | 8520602..8520744 | 455..313 | 715 | 100 | Minus |
3R | 32079331 | 3R | 8521028..8521155 | 146..19 | 640 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-12 04:51:46 has no hits.
BO11961.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:21:50 Download gff for
BO11961.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11737-PA | 537..1368 | 16..847 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 04:51:44 Download gff for
BO11961.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11737-PA | 537..1368 | 16..847 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 23:29:17 Download gff for
BO11961.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11737-RB | 749..1582 | 13..847 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 07:17:44 Download gff for
BO11961.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11737-RA | 1075..1908 | 13..847 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 07:17:44 Download gff for
BO11961.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 8520802..8520968 | 146..312 | 100 | -> | Minus |
3R | 8521029..8521160 | 13..145 | 97 | | Minus |
3R | 8520156..8520549 | 454..847 | 100 | -> | Minus |
3R | 8520604..8520744 | 313..453 | 100 | -> | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 23:29:17 Download gff for
BO11961.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 4345878..4346271 | 454..847 | 100 | -> | Minus |
arm_3R | 4346326..4346466 | 313..453 | 100 | -> | Minus |
arm_3R | 4346524..4346690 | 146..312 | 100 | -> | Minus |
arm_3R | 4346751..4346882 | 13..145 | 97 | | Minus |
BO11961.5prime Sequence
900 bp (768 high quality bases) assembled on 2006-04-19
> BO11961.5prime
GAAGTTATCAGTCGACATGGCGGGACAAAGCAAGCTGATCGATCCACTGT
GCATCACTTGCAAGGAGTTCCAGCACCCATGGACGGACCACTGCGTGAGC
GCCACCGCCGGTATACTACTCTCGGCCACGCCCTACTGCCTGCGGGTCTA
CACAATAGTGTACGCCCTGTCCTTGCTGATGCGCCACCGCATTCCAAGTC
GCGACGATCTGCGCAAGACGCTGCTAGGGATCATCCAATCGACGGCTTTT
CTAGTTACTAATGCCTACACCTTTATCCTGTACAACTGTGCGCTGCGGCA
CATGCTCGGGAGGTACAACTTCTACACAGTGGCCTTTGTGCCCTGCTTTT
TGGCCTCGTTTTCGGCCATTTTGGTTGAGAGACCAGCCCGCCGACCACTA
CTCACTCTCTACGTGGCCAATGTGGCCACTGAAGCGCTGTGGAAAATGGC
AGAATCGAGGGGATGGGTGCGCTCCGTTCCTAATGGACAGACACTCATCT
TTGGCGTGAGCATGGCGGCGCTGCTCTACATCTATCGTACTGGCACCACC
AAGGATTCCATCTTCAACATCCTTCGCATTTTCGTGGGCAAGGAGGAGGC
GGGGCCGATTGTCAAGTCCGGGCCCGCAGTGCCCGGTGAGCAGCCTGCGC
CAGACCGCCGACGTCCCACCGTCAGTTTTTCGACTGTATCCGACTGGGTG
CGCGTGTACAGCAATCTCATTCGCGCAAAACACGAAAGCTGTCGGCATCA
ACAGAGCTGCATTGGATACTCCCTGATGGGTGGAATTAAACCCTTTGTGG
GTGGAGTGGGTCTTCAGGTTGCCCTTAAGCTGGTCATGAACGTCAAACGA
ATTACGGCTGGAAAAATGCCGTGGAAGAAGATGATCTTCAACCGTGGTAC
BO11961.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:34:12
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG11737-PA | 1368 | CG11737-RA | 1..884 | 17..900 | 4420 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 20:52:18
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG11737-RC | 1731 | CG11737-RC | 144..1027 | 17..900 | 4420 | 100 | Plus |
CG11737-RB | 1800 | CG11737-RB | 213..1096 | 17..900 | 4420 | 100 | Plus |
CG11737-RA | 2126 | CG11737-RA | 539..1422 | 17..900 | 4420 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 20:52:14
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 8519620..8520503 | 17..900 | 4420 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-10 20:52:16 has no hits.
BO11961.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:21:51 Download gff for
BO11961.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11737-PA | 1..884 | 17..900 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 04:51:45 Download gff for
BO11961.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11737-PA | 1..884 | 17..900 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 04:02:19 Download gff for
BO11961.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11737-RB | 204..1096 | 9..900 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:31:38 Download gff for
BO11961.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11737-RA | 530..1422 | 9..900 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:31:38 Download gff for
BO11961.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 8519611..8520503 | 9..900 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 04:02:19 Download gff for
BO11961.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 4345333..4346225 | 9..900 | 99 | | Plus |
BO11961.complete Sequence
1399 bp assembled on 2006-10-11
GenBank Submission: FJ632260
> BO11961.complete
GAAGTTATCAGTCGACATGGCGGGACAAAGCAAGCTGATCGATCCACTGT
GCATCACTTGCAAGGAGTTCCAGCACCCATGGACGGACCACTGCGTGAGC
GCCACCGCCGGTATACTACTCTCGGCCACGCCCTACTGCCTGCGGGTCTA
CACAATAGTGTACGCCCTGTCCTTGCTGATGCGCCACCGCATTCCAAGTC
GCGACGATCTGCGCAAGACGCTGCTAGGGATCATCCAATCGACGGCTTTT
CTAGTTACTAATGCCTACACCTTTATCCTGTACAACTGTGCGCTGCGGCA
CATGCTCGGGAGGTACAACTTCTACACAGTGGCCTTTGTGCCCTGCTTTT
TGGCCTCGTTTTCGGCCATTTTGGTTGAGAGACCAGCCCGCCGACCACTA
CTCACTCTCTACGTGGCCAATGTGGCCACTGAAGCGCTGTGGAAAATGGC
AGAATCGAGGGGATGGGTGCGCTCCGTTCCTAATGGACAGACACTCATCT
TTGGCGTGAGCATGGCGGCGCTGCTCTACATCTATCGTACTGGCACCACC
AAGGATTCCATCTTCAACATCCTTCGCATTTTCGTGGGCAAGGAGGAGGC
GGGGCCGATTGTCAAGTCCGGGCCCGCAGTGCCCGGTGAGCAGCCTGCGC
CAGACCGCCGACGTCCCACCGTCAGTTTTTCGACTGTATCCGACTGGGTG
CGCGTGTACAGCAATCTCATTCGCGCAAAACACGAAAGCTGTCGGCATCA
ACAGAGCTGCATTGGATACTCCCTGATGGGTGGAATTAAACCCTTTGTGG
GTGGAGTGGGTCTTCAGGTTGCCCTTAAGCTGGTCATGAACGTCAAACGA
ATTACGGCTGGAAAAATGCCGTGGAAGAAGATGATCTTCAACCGTGGTAC
TCTACAACTGGGCATCTTCATGGGCAGCTTTTCATTTCTCTATAAGTCGG
TGTCCTGCCTGCTGCGGCACAGTTTTAACCGGGACGATGCCAGATTTGCA
ATTCCAGCGTCGTTAATTGCCTCTATATCCTTCACCCAGTATCCGGATAA
CACGGTAGCCCTGTATGTTATGTGGAAGGCGCTACAGATTCTTTGCACAA
AGGGCCAAGAACATGGTATTGTGCCACACATCCCCAACTTTATGCTTTTC
TTGTACTCCTTTTTCACGGCTGTGCTTTTCCATGCGGGAATATTGGAACC
CAAGAGCCTGCGCCCCAGCTACTACAAGTTTCTGCAGGCCATTTCGGGCG
ATCGACTGAGCAAGTTTAATCTGAGCGCCTTTGATGTATTCGGGCTGAGC
AGTCAACAACAGGCGCTGGACACCATCAAGGCACTGAACATAGTAGAAAA
GTCATCGTTGCCGGCCTACTCCTTTGCCTCCGCAAGCTTTCTAGACCAT
BO11961.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 06:49:11
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG11737-RC | 1368 | CG11737-PC | 1..1365 | 17..1381 | 6825 | 100 | Plus |
CG11737-RB | 1368 | CG11737-PB | 1..1365 | 17..1381 | 6825 | 100 | Plus |
CG11737-RA | 1368 | CG11737-PA | 1..1365 | 17..1381 | 6825 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 06:49:12
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG11737-RC | 1731 | CG11737-RC | 144..1508 | 17..1381 | 6825 | 100 | Plus |
CG11737-RB | 1800 | CG11737-RB | 213..1577 | 17..1381 | 6825 | 100 | Plus |
CG11737-RA | 2126 | CG11737-RA | 539..1903 | 17..1381 | 6825 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 06:49:09
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 8519620..8520549 | 17..946 | 4650 | 100 | Plus |
3R | 32079331 | 3R | 8520800..8520968 | 1086..1254 | 845 | 100 | Plus |
3R | 32079331 | 3R | 8520602..8520744 | 945..1087 | 715 | 100 | Plus |
3R | 32079331 | 3R | 8521028..8521155 | 1254..1381 | 640 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 06:49:10 has no hits.
BO11961.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 13:58:53 Download gff for
BO11961.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11737-RA | 1..1368 | 17..1384 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:10:33 Download gff for
BO11961.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11737-RA | 534..1912 | 9..1387 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 04:55:17 Download gff for
BO11961.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11737-RB | 213..1577 | 17..1383 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 13:58:53 Download gff for
BO11961.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11737-RA | 534..1912 | 9..1387 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 07:55:12 Download gff for
BO11961.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11737-RA | 539..1903 | 17..1383 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 07:55:12 Download gff for
BO11961.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 8520802..8520968 | 1088..1254 | 100 | -> | Plus |
3R | 8521029..8521155 | 1255..1383 | 98 | | Plus |
3R | 8519620..8520549 | 17..946 | 100 | -> | Plus |
3R | 8520604..8520744 | 947..1087 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 04:55:17 Download gff for
BO11961.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 4345342..4346271 | 17..946 | 100 | -> | Plus |
arm_3R | 4346326..4346466 | 947..1087 | 100 | -> | Plus |
arm_3R | 4346524..4346690 | 1088..1254 | 100 | -> | Plus |
arm_3R | 4346751..4346877 | 1255..1383 | 98 | | Plus |
BO11961.pep Sequence
Translation from 16 to 1399
> BO11961.pep
MAGQSKLIDPLCITCKEFQHPWTDHCVSATAGILLSATPYCLRVYTIVYA
LSLLMRHRIPSRDDLRKTLLGIIQSTAFLVTNAYTFILYNCALRHMLGRY
NFYTVAFVPCFLASFSAILVERPARRPLLTLYVANVATEALWKMAESRGW
VRSVPNGQTLIFGVSMAALLYIYRTGTTKDSIFNILRIFVGKEEAGPIVK
SGPAVPGEQPAPDRRRPTVSFSTVSDWVRVYSNLIRAKHESCRHQQSCIG
YSLMGGIKPFVGGVGLQVALKLVMNVKRITAGKMPWKKMIFNRGTLQLGI
FMGSFSFLYKSVSCLLRHSFNRDDARFAIPASLIASISFTQYPDNTVALY
VMWKALQILCTKGQEHGIVPHIPNFMLFLYSFFTAVLFHAGILEPKSLRP
SYYKFLQAISGDRLSKFNLSAFDVFGLSSQQQALDTIKALNIVEKSSLPA
YSFASASFLDH
BO11961.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:59:29
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG11737-PC | 455 | CG11737-PC | 1..455 | 1..455 | 2357 | 100 | Plus |
CG11737-PB | 455 | CG11737-PB | 1..455 | 1..455 | 2357 | 100 | Plus |
CG11737-PA | 455 | CG11737-PA | 1..455 | 1..455 | 2357 | 100 | Plus |
CG31259-PB | 455 | CG31259-PB | 1..452 | 1..452 | 1187 | 50.5 | Plus |
CG31259-PA | 455 | CG31259-PA | 1..452 | 1..452 | 1187 | 50.5 | Plus |