Clone BO11961 Report

Search the DGRC for BO11961

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:119
Well:61
Vector:pDNR-Dual
Associated Gene/TranscriptCG11737-RA
Protein status:BO11961.pep: validated full length
Sequenced Size:1399

Clone Sequence Records

BO11961.3prime Sequence

847 bp (786 high quality bases) assembled on 2006-04-19

> BO11961.3prime
ATGGTCTAGAAAGCTTGCGGAGGCAAAGGAGTAGGCCGGCAACGATGACT
TTTCTACTATGTTCAGTGCCTTGATGGTGTCCAGCGCCTGTTGTTGACTG
CTCAGCCCGAATACATCAAAGGCGCTCAGATTAAACTTGCTCAGTCGATC
GCCCGAAATGGCCTGCAGAAACTTGTAGTAGCTGGGGCGCAGGCTCTTGG
GTTCCAATATTCCCGCATGGAAAAGCACAGCCGTGAAAAAGGAGTACAAG
AAAAGCATAAAGTTGGGGATGTGTGGCACAATACCATGTTCTTGGCCCTT
TGTGCAAAGAATCTGTAGCGCCTTCCACATAACATACAGGGCTACCGTGT
TATCCGGATACTGGGTGAAGGATATAGAGGCAATTAACGACGCTGGAATT
GCAAATCTGGCATCGTCCCGGTTAAAACTGTGCCGCAGCAGGCAGGACAC
CGACTTATAGAGAAATGAAAAGCTGCCCATGAAGATGCCCAGTTGTAGAG
TACCACGGTTGAAGATCATCTTCTTCCACGGCATTTTTCCAGCCGTAATT
CGTTTGACGTTCATGACCAGCTTAAGGGCAACCTGAAGACCCACTCCACC
CACAAAGGGTTTAATTCCACCCATCAGGGAGTATCCAATGCAGCTCTGTT
GATGCCGACAGCTTTCGTGTTTTGCGCGAATGAGATTGCTGTACACGCGC
ACCCAGTCGGATACAGTCGAAAAACTGACGGTGGGACGTCGGCGGTCTGG
CGCAGGCTGCTCACCGGGCACTGCGGGCCCGGACTTGACAATCGGCCCCG
CCTCCTCCTTGCCCACGAAAATGCGAAGGATGTTGAAGATGGAATCC

BO11961.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:34:11
Subject Length Description Subject Range Query Range Score Percent Strand
CG11737-PA 1368 CG11737-RA 537..1365 847..19 4145 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 04:51:49
Subject Length Description Subject Range Query Range Score Percent Strand
CG11737-RC 1731 CG11737-RC 680..1508 847..19 4145 100 Minus
CG11737-RB 1800 CG11737-RB 749..1577 847..19 4145 100 Minus
CG11737-RA 2126 CG11737-RA 1075..1903 847..19 4145 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 04:51:44
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 8520156..8520549 847..454 1970 100 Minus
3R 32079331 3R 8520800..8520968 314..146 845 100 Minus
3R 32079331 3R 8520602..8520744 455..313 715 100 Minus
3R 32079331 3R 8521028..8521155 146..19 640 100 Minus
Blast to na_te.dros performed on 2015-02-12 04:51:46 has no hits.

BO11961.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:21:50 Download gff for BO11961.3prime
Subject Subject Range Query Range Percent Splice Strand
CG11737-PA 537..1368 16..847 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 04:51:44 Download gff for BO11961.3prime
Subject Subject Range Query Range Percent Splice Strand
CG11737-PA 537..1368 16..847 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 23:29:17 Download gff for BO11961.3prime
Subject Subject Range Query Range Percent Splice Strand
CG11737-RB 749..1582 13..847 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 07:17:44 Download gff for BO11961.3prime
Subject Subject Range Query Range Percent Splice Strand
CG11737-RA 1075..1908 13..847 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 07:17:44 Download gff for BO11961.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 8520802..8520968 146..312 100 -> Minus
3R 8521029..8521160 13..145 97   Minus
3R 8520156..8520549 454..847 100 -> Minus
3R 8520604..8520744 313..453 100 -> Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 23:29:17 Download gff for BO11961.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 4345878..4346271 454..847 100 -> Minus
arm_3R 4346326..4346466 313..453 100 -> Minus
arm_3R 4346524..4346690 146..312 100 -> Minus
arm_3R 4346751..4346882 13..145 97   Minus

BO11961.5prime Sequence

900 bp (768 high quality bases) assembled on 2006-04-19

> BO11961.5prime
GAAGTTATCAGTCGACATGGCGGGACAAAGCAAGCTGATCGATCCACTGT
GCATCACTTGCAAGGAGTTCCAGCACCCATGGACGGACCACTGCGTGAGC
GCCACCGCCGGTATACTACTCTCGGCCACGCCCTACTGCCTGCGGGTCTA
CACAATAGTGTACGCCCTGTCCTTGCTGATGCGCCACCGCATTCCAAGTC
GCGACGATCTGCGCAAGACGCTGCTAGGGATCATCCAATCGACGGCTTTT
CTAGTTACTAATGCCTACACCTTTATCCTGTACAACTGTGCGCTGCGGCA
CATGCTCGGGAGGTACAACTTCTACACAGTGGCCTTTGTGCCCTGCTTTT
TGGCCTCGTTTTCGGCCATTTTGGTTGAGAGACCAGCCCGCCGACCACTA
CTCACTCTCTACGTGGCCAATGTGGCCACTGAAGCGCTGTGGAAAATGGC
AGAATCGAGGGGATGGGTGCGCTCCGTTCCTAATGGACAGACACTCATCT
TTGGCGTGAGCATGGCGGCGCTGCTCTACATCTATCGTACTGGCACCACC
AAGGATTCCATCTTCAACATCCTTCGCATTTTCGTGGGCAAGGAGGAGGC
GGGGCCGATTGTCAAGTCCGGGCCCGCAGTGCCCGGTGAGCAGCCTGCGC
CAGACCGCCGACGTCCCACCGTCAGTTTTTCGACTGTATCCGACTGGGTG
CGCGTGTACAGCAATCTCATTCGCGCAAAACACGAAAGCTGTCGGCATCA
ACAGAGCTGCATTGGATACTCCCTGATGGGTGGAATTAAACCCTTTGTGG
GTGGAGTGGGTCTTCAGGTTGCCCTTAAGCTGGTCATGAACGTCAAACGA
ATTACGGCTGGAAAAATGCCGTGGAAGAAGATGATCTTCAACCGTGGTAC

BO11961.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:34:12
Subject Length Description Subject Range Query Range Score Percent Strand
CG11737-PA 1368 CG11737-RA 1..884 17..900 4420 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 20:52:18
Subject Length Description Subject Range Query Range Score Percent Strand
CG11737-RC 1731 CG11737-RC 144..1027 17..900 4420 100 Plus
CG11737-RB 1800 CG11737-RB 213..1096 17..900 4420 100 Plus
CG11737-RA 2126 CG11737-RA 539..1422 17..900 4420 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 20:52:14
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 8519620..8520503 17..900 4420 100 Plus
Blast to na_te.dros performed on 2015-02-10 20:52:16 has no hits.

BO11961.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:21:51 Download gff for BO11961.5prime
Subject Subject Range Query Range Percent Splice Strand
CG11737-PA 1..884 17..900 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 04:51:45 Download gff for BO11961.5prime
Subject Subject Range Query Range Percent Splice Strand
CG11737-PA 1..884 17..900 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 04:02:19 Download gff for BO11961.5prime
Subject Subject Range Query Range Percent Splice Strand
CG11737-RB 204..1096 9..900 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:31:38 Download gff for BO11961.5prime
Subject Subject Range Query Range Percent Splice Strand
CG11737-RA 530..1422 9..900 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:31:38 Download gff for BO11961.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 8519611..8520503 9..900 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 04:02:19 Download gff for BO11961.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 4345333..4346225 9..900 99   Plus

BO11961.complete Sequence

1399 bp assembled on 2006-10-11

GenBank Submission: FJ632260

> BO11961.complete
GAAGTTATCAGTCGACATGGCGGGACAAAGCAAGCTGATCGATCCACTGT
GCATCACTTGCAAGGAGTTCCAGCACCCATGGACGGACCACTGCGTGAGC
GCCACCGCCGGTATACTACTCTCGGCCACGCCCTACTGCCTGCGGGTCTA
CACAATAGTGTACGCCCTGTCCTTGCTGATGCGCCACCGCATTCCAAGTC
GCGACGATCTGCGCAAGACGCTGCTAGGGATCATCCAATCGACGGCTTTT
CTAGTTACTAATGCCTACACCTTTATCCTGTACAACTGTGCGCTGCGGCA
CATGCTCGGGAGGTACAACTTCTACACAGTGGCCTTTGTGCCCTGCTTTT
TGGCCTCGTTTTCGGCCATTTTGGTTGAGAGACCAGCCCGCCGACCACTA
CTCACTCTCTACGTGGCCAATGTGGCCACTGAAGCGCTGTGGAAAATGGC
AGAATCGAGGGGATGGGTGCGCTCCGTTCCTAATGGACAGACACTCATCT
TTGGCGTGAGCATGGCGGCGCTGCTCTACATCTATCGTACTGGCACCACC
AAGGATTCCATCTTCAACATCCTTCGCATTTTCGTGGGCAAGGAGGAGGC
GGGGCCGATTGTCAAGTCCGGGCCCGCAGTGCCCGGTGAGCAGCCTGCGC
CAGACCGCCGACGTCCCACCGTCAGTTTTTCGACTGTATCCGACTGGGTG
CGCGTGTACAGCAATCTCATTCGCGCAAAACACGAAAGCTGTCGGCATCA
ACAGAGCTGCATTGGATACTCCCTGATGGGTGGAATTAAACCCTTTGTGG
GTGGAGTGGGTCTTCAGGTTGCCCTTAAGCTGGTCATGAACGTCAAACGA
ATTACGGCTGGAAAAATGCCGTGGAAGAAGATGATCTTCAACCGTGGTAC
TCTACAACTGGGCATCTTCATGGGCAGCTTTTCATTTCTCTATAAGTCGG
TGTCCTGCCTGCTGCGGCACAGTTTTAACCGGGACGATGCCAGATTTGCA
ATTCCAGCGTCGTTAATTGCCTCTATATCCTTCACCCAGTATCCGGATAA
CACGGTAGCCCTGTATGTTATGTGGAAGGCGCTACAGATTCTTTGCACAA
AGGGCCAAGAACATGGTATTGTGCCACACATCCCCAACTTTATGCTTTTC
TTGTACTCCTTTTTCACGGCTGTGCTTTTCCATGCGGGAATATTGGAACC
CAAGAGCCTGCGCCCCAGCTACTACAAGTTTCTGCAGGCCATTTCGGGCG
ATCGACTGAGCAAGTTTAATCTGAGCGCCTTTGATGTATTCGGGCTGAGC
AGTCAACAACAGGCGCTGGACACCATCAAGGCACTGAACATAGTAGAAAA
GTCATCGTTGCCGGCCTACTCCTTTGCCTCCGCAAGCTTTCTAGACCAT

BO11961.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 06:49:11
Subject Length Description Subject Range Query Range Score Percent Strand
CG11737-RC 1368 CG11737-PC 1..1365 17..1381 6825 100 Plus
CG11737-RB 1368 CG11737-PB 1..1365 17..1381 6825 100 Plus
CG11737-RA 1368 CG11737-PA 1..1365 17..1381 6825 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 06:49:12
Subject Length Description Subject Range Query Range Score Percent Strand
CG11737-RC 1731 CG11737-RC 144..1508 17..1381 6825 100 Plus
CG11737-RB 1800 CG11737-RB 213..1577 17..1381 6825 100 Plus
CG11737-RA 2126 CG11737-RA 539..1903 17..1381 6825 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 06:49:09
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 8519620..8520549 17..946 4650 100 Plus
3R 32079331 3R 8520800..8520968 1086..1254 845 100 Plus
3R 32079331 3R 8520602..8520744 945..1087 715 100 Plus
3R 32079331 3R 8521028..8521155 1254..1381 640 100 Plus
Blast to na_te.dros performed on 2014-11-27 06:49:10 has no hits.

BO11961.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 13:58:53 Download gff for BO11961.complete
Subject Subject Range Query Range Percent Splice Strand
CG11737-RA 1..1368 17..1384 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:10:33 Download gff for BO11961.complete
Subject Subject Range Query Range Percent Splice Strand
CG11737-RA 534..1912 9..1387 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 04:55:17 Download gff for BO11961.complete
Subject Subject Range Query Range Percent Splice Strand
CG11737-RB 213..1577 17..1383 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 13:58:53 Download gff for BO11961.complete
Subject Subject Range Query Range Percent Splice Strand
CG11737-RA 534..1912 9..1387 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 07:55:12 Download gff for BO11961.complete
Subject Subject Range Query Range Percent Splice Strand
CG11737-RA 539..1903 17..1383 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 07:55:12 Download gff for BO11961.complete
Subject Subject Range Query Range Percent Splice Strand
3R 8520802..8520968 1088..1254 100 -> Plus
3R 8521029..8521155 1255..1383 98   Plus
3R 8519620..8520549 17..946 100 -> Plus
3R 8520604..8520744 947..1087 100 -> Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 04:55:17 Download gff for BO11961.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 4345342..4346271 17..946 100 -> Plus
arm_3R 4346326..4346466 947..1087 100 -> Plus
arm_3R 4346524..4346690 1088..1254 100 -> Plus
arm_3R 4346751..4346877 1255..1383 98   Plus

BO11961.pep Sequence

Translation from 16 to 1399

> BO11961.pep
MAGQSKLIDPLCITCKEFQHPWTDHCVSATAGILLSATPYCLRVYTIVYA
LSLLMRHRIPSRDDLRKTLLGIIQSTAFLVTNAYTFILYNCALRHMLGRY
NFYTVAFVPCFLASFSAILVERPARRPLLTLYVANVATEALWKMAESRGW
VRSVPNGQTLIFGVSMAALLYIYRTGTTKDSIFNILRIFVGKEEAGPIVK
SGPAVPGEQPAPDRRRPTVSFSTVSDWVRVYSNLIRAKHESCRHQQSCIG
YSLMGGIKPFVGGVGLQVALKLVMNVKRITAGKMPWKKMIFNRGTLQLGI
FMGSFSFLYKSVSCLLRHSFNRDDARFAIPASLIASISFTQYPDNTVALY
VMWKALQILCTKGQEHGIVPHIPNFMLFLYSFFTAVLFHAGILEPKSLRP
SYYKFLQAISGDRLSKFNLSAFDVFGLSSQQQALDTIKALNIVEKSSLPA
YSFASASFLDH

BO11961.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:59:29
Subject Length Description Subject Range Query Range Score Percent Strand
CG11737-PC 455 CG11737-PC 1..455 1..455 2357 100 Plus
CG11737-PB 455 CG11737-PB 1..455 1..455 2357 100 Plus
CG11737-PA 455 CG11737-PA 1..455 1..455 2357 100 Plus
CG31259-PB 455 CG31259-PB 1..452 1..452 1187 50.5 Plus
CG31259-PA 455 CG31259-PA 1..452 1..452 1187 50.5 Plus