Clone BO11965 Report

Search the DGRC for BO11965

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:119
Well:65
Vector:pDNR-Dual
Associated Gene/TranscriptCG6106-RA
Protein status:BO11965.pep: validated full length
Sequenced Size:1492

Clone Sequence Records

BO11965.3prime Sequence

853 bp (819 high quality bases) assembled on 2006-04-19

> BO11965.3prime
ATGGTCTAGAAAGCTTGCCATGCTCACGAACTTGACCAGTTTTCGACTGC
TCCTCCGAAGCAGCACCTTGCCCAGGGGCTGGCCGAAGCCCTCGAACTGT
TGGTAGACATGCAGGCCCCGCACCACCGTGGCATGCACCACGCCCCGCAA
CTTTTGACCCGCGTACGGGGTGGCCTTCGTGGCCGTGTAGAGCAGCTCCG
GGCCCACGGTGAACTCCTCCTCGGGACTCCACACACAGAAGTCGGCATCG
TAGCCCTCGGCAATGCGGCCCTTCGAGGCGGACAAGCCGCACAGGTTCGC
CGGCTCCTGGCACATCAGACGATGGATGTCCGCGATGGTCAGGTTGGCGG
ATCCTCGCCGATTGGCGGCCGCTGTCCAAACGACCGACAGGCTGAGTTGC
AACGAGTTGATGCCCGGCCACGCCTTCAGGAAGTTGCCACGCCCCCTTCC
GCAGGTGAGAGCACGTGCACCCGGCGTCGCCGGCGAGTGATCACTGCCAA
TCATGCGGATGGCTCCGCCCGGTCTCAGAGCCTGCCACAATTGCTCCTGA
TTGCGACGCTCCCGAATCGGTGGCCAGGTCTTGAACTCCGTGCCGCAATC
GGGCACATCCTCGGCCGCCAGGGCCAGGTAATGCGGACAGGTGTCCACCG
TTAGATTCCCGCCCTGCCGTCGACACTCCTCCACCAGCGGCAGACTTTCG
CCGCTGCTGCAGTTGAGGATGTGTATGCAGCGCCGCGGGTGGCGATTCGC
CAGCCGGCAGAGCAACTGCGTCGCGGAAATCTCCATTTGGGGTGGACGAG
TCACCAGGAAAGTGCCATACTCCCGGGGGCGCCTCCTCGTCCGGATGGAT
TTC

BO11965.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:34:16
Subject Length Description Subject Range Query Range Score Percent Strand
CG6106-PA 1461 CG6106-RA 649..1458 828..19 4050 100 Minus
CG6106-PA 1461 CG6106-RA 625..652 853..826 140 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-06 18:50:20
Subject Length Description Subject Range Query Range Score Percent Strand
CG6106-RB 2446 CG6106-RB 647..1480 853..19 4150 99.9 Minus
CG6106-RA 1878 CG6106-RA 647..1480 853..19 4150 99.9 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-06 18:50:12
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 18359958..18360457 853..353 2455 99.8 Minus
X 23542271 X 18361225..18361561 355..19 1685 100 Minus
Blast to na_te.dros performed on 2015-02-06 18:50:16 has no hits.

BO11965.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:21:57 Download gff for BO11965.3prime
Subject Subject Range Query Range Percent Splice Strand
CG6106-PA 625..1461 16..853 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 04:51:53 Download gff for BO11965.3prime
Subject Subject Range Query Range Percent Splice Strand
CG6106-PA 625..1461 16..853 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-11 10:42:23 Download gff for BO11965.3prime
Subject Subject Range Query Range Percent Splice Strand
CG6106-RA 647..1480 19..853 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-06 19:48:09 Download gff for BO11965.3prime
Subject Subject Range Query Range Percent Splice Strand
CG6106-RA 647..1480 19..853 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-06 19:48:09 Download gff for BO11965.3prime
Subject Subject Range Query Range Percent Splice Strand
X 18359958..18360456 354..853 99 -> Minus
X 18361227..18361561 19..353 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-11 10:42:23 Download gff for BO11965.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 18253991..18254489 354..853 99 -> Minus
arm_X 18255260..18255594 19..353 100   Minus

BO11965.5prime Sequence

888 bp (836 high quality bases) assembled on 2006-04-19

> BO11965.5prime
GAAGTTATCAGTCGACATGGATCTGTTGTTTCTCAGCCGGCGAATTTTCC
TGGGCGATGGCAGCCAAAACGCCCTGATCCATGGCGGCATCATCGTGGAT
ACAGAGGGCATTATACGCAGGGTGCTACGTTCACCGCAGGAGGTTAATAC
CTATTTGTACAACACAGAATCCGAATCGGTTTACGATTTCGGGGACCTGG
TACTGATGCCCGGTCTGATTGATCCCAATGTCCATATCAACGAGCCGGGT
CGCAAGGACTGGGAGGGTTTTGCAACTGCCACCAAGGCGGCGGCCGCCGG
TGGCTTCACCACAATCATCGATCGACCCACCAACGCGCAACCACCCACCG
TTAGTGTGGCCCATCTCAAGGCCAAAACGTCGACGGCCCGTGGAAAGATC
TATGTGGACGTGGGTTTTTGGGGCGGACTAGTGCCCGGAAACGGGGATCA
GCTGGCTGCACTTTTGGGTGCCGGTGTCATGGGTCTGCAGTGCACATTGT
GCGATCCCGCGGCGCCCGTCTCTCAGGAATTTCCCGCCGTAAACGAATCT
CAGCTGGAGGAGGCTCTTTCCCAGTTGGACAAGGATCAGGCTGAAGGGGA
AGCAATCGTAGCGGTGCATGCTGAGCTGCCGCTGACCACCGAAATCCATC
CGGACGAGGAGGCGCCCCGGGAGTATGGCACTTTCCTGGTGACTCGTCCA
CCCCAAATGGAGATTTCCGCGACGCAGTTGCTCTGCCGGCTGGCGAATCG
CCACCCGCGGCGCTGCATACACATCCTCAACTGCAGCAGCGGCGAAAGTC
TGCCGCTGGTGGAGGAGTGTCGACGGCAGGGCGGGAATCTAACGGTGGAC
ACCTGTCCGCATTACCTGGCCCTGGCGGCCGAGGATGT

BO11965.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:34:17
Subject Length Description Subject Range Query Range Score Percent Strand
CG6106-PA 1461 CG6106-RA 1..872 17..888 4360 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 01:23:28
Subject Length Description Subject Range Query Range Score Percent Strand
CG6106-RB 2446 CG6106-RB 23..894 17..888 4360 100 Plus
CG6106-RA 1878 CG6106-RA 23..894 17..888 4360 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 01:23:22
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 18359064..18359558 122..616 2475 100 Plus
X 23542271 X 18359930..18360205 613..888 1380 100 Plus
X 23542271 X 18358903..18359008 17..122 530 100 Plus
Blast to na_te.dros performed on 2015-02-12 01:23:25 has no hits.

BO11965.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:21:58 Download gff for BO11965.5prime
Subject Subject Range Query Range Percent Splice Strand
CG6106-PA 1..872 17..888 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 04:51:55 Download gff for BO11965.5prime
Subject Subject Range Query Range Percent Splice Strand
CG6106-PA 1..872 17..888 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 21:20:22 Download gff for BO11965.5prime
Subject Subject Range Query Range Percent Splice Strand
CG6106-RA 21..894 14..888 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 05:34:36 Download gff for BO11965.5prime
Subject Subject Range Query Range Percent Splice Strand
CG6106-RA 21..894 14..888 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 05:34:36 Download gff for BO11965.5prime
Subject Subject Range Query Range Percent Splice Strand
X 18358901..18359008 14..122 99 -> Plus
X 18359065..18359555 123..613 100 -> Plus
X 18359931..18360205 614..888 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 21:20:22 Download gff for BO11965.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 18252934..18253041 14..122 99 -> Plus
arm_X 18253098..18253588 123..613 100 -> Plus
arm_X 18253964..18254238 614..888 100   Plus

BO11965.complete Sequence

1492 bp assembled on 2006-10-11

GenBank Submission: FJ632262

> BO11965.complete
GAAGTTATCAGTCGACATGGATCTGTTGTTTCTCAGCCGGCGAATTTTCC
TGGGCGATGGCAGCCAAAACGCCCTGATCCATGGCGGCATCATCGTGGAT
ACAGAGGGCATTATACGCAGGGTGCTACGTTCACCGCAGGAGGTTAATAC
CTATTTGTACAACACAGAATCCGAATCGGTTTACGATTTCGGGGACCTGG
TACTGATGCCCGGTCTGATTGATCCCAATGTCCATATCAACGAGCCGGGT
CGCAAGGACTGGGAGGGTTTTGCAACTGCCACCAAGGCGGCGGCCGCCGG
TGGCTTCACCACAATCATCGATCGACCCACCAACGCGCAACCACCCACCG
TTAGTGTGGCCCATCTCAAGGCCAAAACGTCGACGGCCCGTGGAAAGATC
TATGTGGACGTGGGTTTTTGGGGCGGACTAGTGCCCGGAAACGGGGATCA
GCTGGCTGCACTTTTGGGTGCCGGTGTCATGGGTCTGCAGTGCACATTGT
GCGATCCCGCGGCGCCCGTCTCTCAGGAATTTCCCGCCGTAAACGAATCT
CAGCTGGAGGAGGCTCTTTCCCAGTTGGACAAGGATCAGGCTGAAGGGGA
AGCAATCGTAGCGGTGCATGCTGAGCTGCCGCTGACCACCGAAATCCATC
CGGACGAGGAGGCGCCCCGGGAGTATGGCACTTTCCTGGTGACTCGTCCA
CCCCAAATGGAGATTTCCGCGACGCAGTTGCTCTGCCGGCTGGCGAATCG
CCACCCGCGGCGCTGCATACACATCCTCAACTGCAGCAGCGGCGAAAGTC
TGCCGCTGGTGGAGGAGTGTCGACGGCAGGGCGGGAATCTAACGGTGGAC
ACCTGTCCGCATTACCTGGCCCTGGCGGCCGAGGATGTGCCCGATTGCGG
CACGGAGTTCAAGACCTGGCCACCGATTCGGGAGCGTCGCAATCAGGAGC
AATTGTGGCAGGCTCTGAGACCGGGCGGAGCCATCCGCATGATTGGCAGT
GATCACTCGCCGGCGACGCCGGGTGCACGTGCTCTCACCTGCGGAAGGGG
GCGTGGCAACTTCCTGAAGGCGTGGCCGGGCATCAACTCGTTGCAACTCA
GCCTGTCGGTCGTTTGGACAGCGGCCGCCAATCGGCGAGGATCCGCCAAC
CTGACCATCGCGGACATCCATCGTCTGATGTGCCAGGAGCCGGCGAACCT
GTGCGGCTTGTCCGCCTCGAAGGGCCGCATTGCCGAGGGCTACGATGCCG
ACTTCTGTGTGTGGAGTCCCGAGGAGGAGTTCACCGTGGGCCCGGAGCTG
CTCTACACGGCCACGAAGGCCACCCCGTACGCGGGTCAAAAGTTGCGGGG
CGTGGTGCATGCCACGGTGGTGCGGGGCCTGCATGTCTACCAACAGTTCG
AGGGCTTCGGCCAGCCCCTGGGCAAGGTGCTGCTTCGGAGGAGCAGTCGA
AAACTGGTCAAGTTCGTGAGCATGGCAAGCTTTCTAGACCAT

BO11965.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 13:30:34
Subject Length Description Subject Range Query Range Score Percent Strand
CG6106-RB 1461 CG6106-PB 1..1458 17..1474 7290 100 Plus
CG6106-RA 1461 CG6106-PA 1..1458 17..1474 7290 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 13:30:36
Subject Length Description Subject Range Query Range Score Percent Strand
CG6106-RB 2446 CG6106-RB 23..1480 17..1474 7290 100 Plus
CG6106-RA 1878 CG6106-RA 23..1480 17..1474 7290 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 13:30:32
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 18359930..18360457 613..1140 2640 100 Plus
X 23542271 X 18359064..18359558 122..616 2475 100 Plus
X 23542271 X 18361225..18361561 1138..1474 1685 100 Plus
X 23542271 X 18358903..18359008 17..122 530 100 Plus
Blast to na_te.dros performed on 2014-11-27 13:30:34 has no hits.

BO11965.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 13:56:21 Download gff for BO11965.complete
Subject Subject Range Query Range Percent Splice Strand
CG6106-RA 1..1461 17..1477 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:06:55 Download gff for BO11965.complete
Subject Subject Range Query Range Percent Splice Strand
CG6106-RA 19..1478 14..1474 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 08:30:15 Download gff for BO11965.complete
Subject Subject Range Query Range Percent Splice Strand
CG6106-RA 23..1480 17..1476 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 13:56:21 Download gff for BO11965.complete
Subject Subject Range Query Range Percent Splice Strand
CG6106-RA 19..1478 14..1474 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:20:03 Download gff for BO11965.complete
Subject Subject Range Query Range Percent Splice Strand
CG6106-RA 23..1480 17..1476 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 14:20:03 Download gff for BO11965.complete
Subject Subject Range Query Range Percent Splice Strand
X 18358903..18359008 17..122 100 -> Plus
X 18359065..18359555 123..613 100 -> Plus
X 18359931..18360456 614..1139 100 -> Plus
X 18361227..18361561 1140..1476 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 08:30:15 Download gff for BO11965.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 18252936..18253041 17..122 100 -> Plus
arm_X 18253098..18253588 123..613 100 -> Plus
arm_X 18253964..18254489 614..1139 100 -> Plus
arm_X 18255260..18255594 1140..1476 99   Plus

BO11965.pep Sequence

Translation from 16 to 1492

> BO11965.pep
MDLLFLSRRIFLGDGSQNALIHGGIIVDTEGIIRRVLRSPQEVNTYLYNT
ESESVYDFGDLVLMPGLIDPNVHINEPGRKDWEGFATATKAAAAGGFTTI
IDRPTNAQPPTVSVAHLKAKTSTARGKIYVDVGFWGGLVPGNGDQLAALL
GAGVMGLQCTLCDPAAPVSQEFPAVNESQLEEALSQLDKDQAEGEAIVAV
HAELPLTTEIHPDEEAPREYGTFLVTRPPQMEISATQLLCRLANRHPRRC
IHILNCSSGESLPLVEECRRQGGNLTVDTCPHYLALAAEDVPDCGTEFKT
WPPIRERRNQEQLWQALRPGGAIRMIGSDHSPATPGARALTCGRGRGNFL
KAWPGINSLQLSLSVVWTAAANRRGSANLTIADIHRLMCQEPANLCGLSA
SKGRIAEGYDADFCVWSPEEEFTVGPELLYTATKATPYAGQKLRGVVHAT
VVRGLHVYQQFEGFGQPLGKVLLRRSSRKLVKFVSMASFLDH

BO11965.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 00:38:18
Subject Length Description Subject Range Query Range Score Percent Strand
CG6106-PB 486 CG6106-PB 1..486 1..486 2557 100 Plus
CG6106-PA 486 CG6106-PA 1..486 1..486 2557 100 Plus
CRMP-PA 589 CG1411-PA 66..471 57..466 221 25.3 Plus