Clone Sequence Records
BO11965.3prime Sequence
853 bp (819 high quality bases) assembled on 2006-04-19
> BO11965.3prime
ATGGTCTAGAAAGCTTGCCATGCTCACGAACTTGACCAGTTTTCGACTGC
TCCTCCGAAGCAGCACCTTGCCCAGGGGCTGGCCGAAGCCCTCGAACTGT
TGGTAGACATGCAGGCCCCGCACCACCGTGGCATGCACCACGCCCCGCAA
CTTTTGACCCGCGTACGGGGTGGCCTTCGTGGCCGTGTAGAGCAGCTCCG
GGCCCACGGTGAACTCCTCCTCGGGACTCCACACACAGAAGTCGGCATCG
TAGCCCTCGGCAATGCGGCCCTTCGAGGCGGACAAGCCGCACAGGTTCGC
CGGCTCCTGGCACATCAGACGATGGATGTCCGCGATGGTCAGGTTGGCGG
ATCCTCGCCGATTGGCGGCCGCTGTCCAAACGACCGACAGGCTGAGTTGC
AACGAGTTGATGCCCGGCCACGCCTTCAGGAAGTTGCCACGCCCCCTTCC
GCAGGTGAGAGCACGTGCACCCGGCGTCGCCGGCGAGTGATCACTGCCAA
TCATGCGGATGGCTCCGCCCGGTCTCAGAGCCTGCCACAATTGCTCCTGA
TTGCGACGCTCCCGAATCGGTGGCCAGGTCTTGAACTCCGTGCCGCAATC
GGGCACATCCTCGGCCGCCAGGGCCAGGTAATGCGGACAGGTGTCCACCG
TTAGATTCCCGCCCTGCCGTCGACACTCCTCCACCAGCGGCAGACTTTCG
CCGCTGCTGCAGTTGAGGATGTGTATGCAGCGCCGCGGGTGGCGATTCGC
CAGCCGGCAGAGCAACTGCGTCGCGGAAATCTCCATTTGGGGTGGACGAG
TCACCAGGAAAGTGCCATACTCCCGGGGGCGCCTCCTCGTCCGGATGGAT
TTC
BO11965.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:34:16
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6106-PA | 1461 | CG6106-RA | 649..1458 | 828..19 | 4050 | 100 | Minus |
CG6106-PA | 1461 | CG6106-RA | 625..652 | 853..826 | 140 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-06 18:50:20
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6106-RB | 2446 | CG6106-RB | 647..1480 | 853..19 | 4150 | 99.9 | Minus |
CG6106-RA | 1878 | CG6106-RA | 647..1480 | 853..19 | 4150 | 99.9 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-06 18:50:12
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 18359958..18360457 | 853..353 | 2455 | 99.8 | Minus |
X | 23542271 | X | 18361225..18361561 | 355..19 | 1685 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-06 18:50:16 has no hits.
BO11965.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:21:57 Download gff for
BO11965.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6106-PA | 625..1461 | 16..853 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 04:51:53 Download gff for
BO11965.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6106-PA | 625..1461 | 16..853 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-11 10:42:23 Download gff for
BO11965.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6106-RA | 647..1480 | 19..853 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-06 19:48:09 Download gff for
BO11965.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6106-RA | 647..1480 | 19..853 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-06 19:48:09 Download gff for
BO11965.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 18359958..18360456 | 354..853 | 99 | -> | Minus |
X | 18361227..18361561 | 19..353 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-11 10:42:23 Download gff for
BO11965.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 18253991..18254489 | 354..853 | 99 | -> | Minus |
arm_X | 18255260..18255594 | 19..353 | 100 | | Minus |
BO11965.5prime Sequence
888 bp (836 high quality bases) assembled on 2006-04-19
> BO11965.5prime
GAAGTTATCAGTCGACATGGATCTGTTGTTTCTCAGCCGGCGAATTTTCC
TGGGCGATGGCAGCCAAAACGCCCTGATCCATGGCGGCATCATCGTGGAT
ACAGAGGGCATTATACGCAGGGTGCTACGTTCACCGCAGGAGGTTAATAC
CTATTTGTACAACACAGAATCCGAATCGGTTTACGATTTCGGGGACCTGG
TACTGATGCCCGGTCTGATTGATCCCAATGTCCATATCAACGAGCCGGGT
CGCAAGGACTGGGAGGGTTTTGCAACTGCCACCAAGGCGGCGGCCGCCGG
TGGCTTCACCACAATCATCGATCGACCCACCAACGCGCAACCACCCACCG
TTAGTGTGGCCCATCTCAAGGCCAAAACGTCGACGGCCCGTGGAAAGATC
TATGTGGACGTGGGTTTTTGGGGCGGACTAGTGCCCGGAAACGGGGATCA
GCTGGCTGCACTTTTGGGTGCCGGTGTCATGGGTCTGCAGTGCACATTGT
GCGATCCCGCGGCGCCCGTCTCTCAGGAATTTCCCGCCGTAAACGAATCT
CAGCTGGAGGAGGCTCTTTCCCAGTTGGACAAGGATCAGGCTGAAGGGGA
AGCAATCGTAGCGGTGCATGCTGAGCTGCCGCTGACCACCGAAATCCATC
CGGACGAGGAGGCGCCCCGGGAGTATGGCACTTTCCTGGTGACTCGTCCA
CCCCAAATGGAGATTTCCGCGACGCAGTTGCTCTGCCGGCTGGCGAATCG
CCACCCGCGGCGCTGCATACACATCCTCAACTGCAGCAGCGGCGAAAGTC
TGCCGCTGGTGGAGGAGTGTCGACGGCAGGGCGGGAATCTAACGGTGGAC
ACCTGTCCGCATTACCTGGCCCTGGCGGCCGAGGATGT
BO11965.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:34:17
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6106-PA | 1461 | CG6106-RA | 1..872 | 17..888 | 4360 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 01:23:28
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6106-RB | 2446 | CG6106-RB | 23..894 | 17..888 | 4360 | 100 | Plus |
CG6106-RA | 1878 | CG6106-RA | 23..894 | 17..888 | 4360 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 01:23:22
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 18359064..18359558 | 122..616 | 2475 | 100 | Plus |
X | 23542271 | X | 18359930..18360205 | 613..888 | 1380 | 100 | Plus |
X | 23542271 | X | 18358903..18359008 | 17..122 | 530 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-12 01:23:25 has no hits.
BO11965.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:21:58 Download gff for
BO11965.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6106-PA | 1..872 | 17..888 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 04:51:55 Download gff for
BO11965.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6106-PA | 1..872 | 17..888 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 21:20:22 Download gff for
BO11965.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6106-RA | 21..894 | 14..888 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 05:34:36 Download gff for
BO11965.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6106-RA | 21..894 | 14..888 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 05:34:36 Download gff for
BO11965.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 18358901..18359008 | 14..122 | 99 | -> | Plus |
X | 18359065..18359555 | 123..613 | 100 | -> | Plus |
X | 18359931..18360205 | 614..888 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 21:20:22 Download gff for
BO11965.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 18252934..18253041 | 14..122 | 99 | -> | Plus |
arm_X | 18253098..18253588 | 123..613 | 100 | -> | Plus |
arm_X | 18253964..18254238 | 614..888 | 100 | | Plus |
BO11965.complete Sequence
1492 bp assembled on 2006-10-11
GenBank Submission: FJ632262
> BO11965.complete
GAAGTTATCAGTCGACATGGATCTGTTGTTTCTCAGCCGGCGAATTTTCC
TGGGCGATGGCAGCCAAAACGCCCTGATCCATGGCGGCATCATCGTGGAT
ACAGAGGGCATTATACGCAGGGTGCTACGTTCACCGCAGGAGGTTAATAC
CTATTTGTACAACACAGAATCCGAATCGGTTTACGATTTCGGGGACCTGG
TACTGATGCCCGGTCTGATTGATCCCAATGTCCATATCAACGAGCCGGGT
CGCAAGGACTGGGAGGGTTTTGCAACTGCCACCAAGGCGGCGGCCGCCGG
TGGCTTCACCACAATCATCGATCGACCCACCAACGCGCAACCACCCACCG
TTAGTGTGGCCCATCTCAAGGCCAAAACGTCGACGGCCCGTGGAAAGATC
TATGTGGACGTGGGTTTTTGGGGCGGACTAGTGCCCGGAAACGGGGATCA
GCTGGCTGCACTTTTGGGTGCCGGTGTCATGGGTCTGCAGTGCACATTGT
GCGATCCCGCGGCGCCCGTCTCTCAGGAATTTCCCGCCGTAAACGAATCT
CAGCTGGAGGAGGCTCTTTCCCAGTTGGACAAGGATCAGGCTGAAGGGGA
AGCAATCGTAGCGGTGCATGCTGAGCTGCCGCTGACCACCGAAATCCATC
CGGACGAGGAGGCGCCCCGGGAGTATGGCACTTTCCTGGTGACTCGTCCA
CCCCAAATGGAGATTTCCGCGACGCAGTTGCTCTGCCGGCTGGCGAATCG
CCACCCGCGGCGCTGCATACACATCCTCAACTGCAGCAGCGGCGAAAGTC
TGCCGCTGGTGGAGGAGTGTCGACGGCAGGGCGGGAATCTAACGGTGGAC
ACCTGTCCGCATTACCTGGCCCTGGCGGCCGAGGATGTGCCCGATTGCGG
CACGGAGTTCAAGACCTGGCCACCGATTCGGGAGCGTCGCAATCAGGAGC
AATTGTGGCAGGCTCTGAGACCGGGCGGAGCCATCCGCATGATTGGCAGT
GATCACTCGCCGGCGACGCCGGGTGCACGTGCTCTCACCTGCGGAAGGGG
GCGTGGCAACTTCCTGAAGGCGTGGCCGGGCATCAACTCGTTGCAACTCA
GCCTGTCGGTCGTTTGGACAGCGGCCGCCAATCGGCGAGGATCCGCCAAC
CTGACCATCGCGGACATCCATCGTCTGATGTGCCAGGAGCCGGCGAACCT
GTGCGGCTTGTCCGCCTCGAAGGGCCGCATTGCCGAGGGCTACGATGCCG
ACTTCTGTGTGTGGAGTCCCGAGGAGGAGTTCACCGTGGGCCCGGAGCTG
CTCTACACGGCCACGAAGGCCACCCCGTACGCGGGTCAAAAGTTGCGGGG
CGTGGTGCATGCCACGGTGGTGCGGGGCCTGCATGTCTACCAACAGTTCG
AGGGCTTCGGCCAGCCCCTGGGCAAGGTGCTGCTTCGGAGGAGCAGTCGA
AAACTGGTCAAGTTCGTGAGCATGGCAAGCTTTCTAGACCAT
BO11965.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 13:30:34
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6106-RB | 1461 | CG6106-PB | 1..1458 | 17..1474 | 7290 | 100 | Plus |
CG6106-RA | 1461 | CG6106-PA | 1..1458 | 17..1474 | 7290 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 13:30:36
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6106-RB | 2446 | CG6106-RB | 23..1480 | 17..1474 | 7290 | 100 | Plus |
CG6106-RA | 1878 | CG6106-RA | 23..1480 | 17..1474 | 7290 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 13:30:32
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 18359930..18360457 | 613..1140 | 2640 | 100 | Plus |
X | 23542271 | X | 18359064..18359558 | 122..616 | 2475 | 100 | Plus |
X | 23542271 | X | 18361225..18361561 | 1138..1474 | 1685 | 100 | Plus |
X | 23542271 | X | 18358903..18359008 | 17..122 | 530 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 13:30:34 has no hits.
BO11965.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 13:56:21 Download gff for
BO11965.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6106-RA | 1..1461 | 17..1477 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:06:55 Download gff for
BO11965.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6106-RA | 19..1478 | 14..1474 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 08:30:15 Download gff for
BO11965.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6106-RA | 23..1480 | 17..1476 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 13:56:21 Download gff for
BO11965.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6106-RA | 19..1478 | 14..1474 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:20:03 Download gff for
BO11965.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6106-RA | 23..1480 | 17..1476 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 14:20:03 Download gff for
BO11965.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 18358903..18359008 | 17..122 | 100 | -> | Plus |
X | 18359065..18359555 | 123..613 | 100 | -> | Plus |
X | 18359931..18360456 | 614..1139 | 100 | -> | Plus |
X | 18361227..18361561 | 1140..1476 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 08:30:15 Download gff for
BO11965.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 18252936..18253041 | 17..122 | 100 | -> | Plus |
arm_X | 18253098..18253588 | 123..613 | 100 | -> | Plus |
arm_X | 18253964..18254489 | 614..1139 | 100 | -> | Plus |
arm_X | 18255260..18255594 | 1140..1476 | 99 | | Plus |
BO11965.pep Sequence
Translation from 16 to 1492
> BO11965.pep
MDLLFLSRRIFLGDGSQNALIHGGIIVDTEGIIRRVLRSPQEVNTYLYNT
ESESVYDFGDLVLMPGLIDPNVHINEPGRKDWEGFATATKAAAAGGFTTI
IDRPTNAQPPTVSVAHLKAKTSTARGKIYVDVGFWGGLVPGNGDQLAALL
GAGVMGLQCTLCDPAAPVSQEFPAVNESQLEEALSQLDKDQAEGEAIVAV
HAELPLTTEIHPDEEAPREYGTFLVTRPPQMEISATQLLCRLANRHPRRC
IHILNCSSGESLPLVEECRRQGGNLTVDTCPHYLALAAEDVPDCGTEFKT
WPPIRERRNQEQLWQALRPGGAIRMIGSDHSPATPGARALTCGRGRGNFL
KAWPGINSLQLSLSVVWTAAANRRGSANLTIADIHRLMCQEPANLCGLSA
SKGRIAEGYDADFCVWSPEEEFTVGPELLYTATKATPYAGQKLRGVVHAT
VVRGLHVYQQFEGFGQPLGKVLLRRSSRKLVKFVSMASFLDH
BO11965.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 00:38:18
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6106-PB | 486 | CG6106-PB | 1..486 | 1..486 | 2557 | 100 | Plus |
CG6106-PA | 486 | CG6106-PA | 1..486 | 1..486 | 2557 | 100 | Plus |
CRMP-PA | 589 | CG1411-PA | 66..471 | 57..466 | 221 | 25.3 | Plus |