Clone BO11967 Report

Search the DGRC for BO11967

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:119
Well:67
Vector:pDNR-Dual
Associated Gene/TranscriptCG14193-RA
Protein status:BO11967.pep: validated full length
Sequenced Size:571

Clone Sequence Records

BO11967.3prime Sequence

569 bp (568 high quality bases) assembled on 2006-04-19

> BO11967.3prime
ATGGTCTAGAAAGCTTGCGTCCTGTAGCTTCAGGCTCTTAATGTAGTCAA
TGAGTAGCTTGGGGTGCACATGTTTGATCTCCTGAACAGGCACGGCTTCC
CCCCACTTGGATCCCTTCCAGGTGACAATGAAGTAGACCGTGTCACCAAG
CATATAGCTGTACATAACATTCTCAATTGCTTTGCCGCGGACCAGGAGCG
CATCCGTAGGCGGCACGTTCAACGGTTGGGACTCATTGGAATTGCCGCCA
TCGAGATTCCCTGACACGCTGCCACCGTTGGTTGCATCCAGTTCTGCCTG
TTGTACCAACAACTCGACGAGCAGCCGAGCCAGCTCTGCCCGAGCCGAAT
TGTGAACTCCCATGTGCTTTGGAGGCGGCGTCGAACCGGCCTCCTTGGAT
TCATCCTTTGTCGGCTCTTCCTGCACTTCCTCCTGCTGATCGTTCTCCTT
CTGCTGATCGTTCTCCTTCTGCTGATCGTTCTCCTTCTGCTTTTCCTCCT
CCGCGGGGAAACCACCTGTGTTCTTGTTGTTGGGGCTGTTTTCTTTGTCC
GCCATGTCGACTGATAACT

BO11967.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:34:19
Subject Length Description Subject Range Query Range Score Percent Strand
CG14193-PA 540 CG14193-RA 1..537 555..19 2685 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 22:38:19
Subject Length Description Subject Range Query Range Score Percent Strand
HP1D3csd-RA 816 CG14193-RA 63..599 555..19 2685 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 22:38:12
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 19190276..19190812 555..19 2685 100 Minus
Blast to na_te.dros performed on 2015-02-10 22:38:16 has no hits.

BO11967.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:22:02 Download gff for BO11967.3prime
Subject Subject Range Query Range Percent Splice Strand
CG14193-PA 1..540 16..555 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 04:51:59 Download gff for BO11967.3prime
Subject Subject Range Query Range Percent Splice Strand
CG14193-PA 1..540 16..555 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 19:57:20 Download gff for BO11967.3prime
Subject Subject Range Query Range Percent Splice Strand
HP1D3csd-RA 63..603 15..555 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 00:03:51 Download gff for BO11967.3prime
Subject Subject Range Query Range Percent Splice Strand
HP1D3csd-RA 63..603 15..555 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 00:03:51 Download gff for BO11967.3prime
Subject Subject Range Query Range Percent Splice Strand
X 19190276..19190816 15..555 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 19:57:20 Download gff for BO11967.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 19084309..19084849 15..555 99   Minus

BO11967.5prime Sequence

569 bp (568 high quality bases) assembled on 2006-04-19

> BO11967.5prime
GAAGTTATCAGTCGACATGGCGGACAAAGAAAACAGCCCCAACAACAAGA
ACACAGGTGGTTTCCCCGCGGAGGAGGAAAAGCAGAAGGAGAACGATCAG
CAGAAGGAGAACGATCAGCAGAAGGAGAACGATCAGCAGGAGGAAGTGCA
GGAAGAGCCGACAAAGGATGAATCCAAGGAGGCCGGTTCGACGCCGCCTC
CAAAGCACATGGGAGTTCACAATTCGGCTCGGGCAGAGCTGGCTCGGCTG
CTCGTCGAGTTGTTGGTACAACAGGCAGAACTGGATGCAACCAACGGTGG
CAGCGTGTCAGGGAATCTCGATGGCGGCAATTCCAATGAGTCCCAACCGT
TGAACGTGCCGCCTACGGATGCGCTCCTGGTCCGCGGCAAAGCAATTGAG
AATGTTATGTACAGCTATATGCTTGGTGACACGGTCTACTTCATTGTCAC
CTGGAAGGGATCCAAGTGGGGGGAAGCCGTGCCTGTTCAGGAGATCAAAC
ATGTGCACCCCAAGCTACTCATTGACTACATTAAGAGCCTGAAGCTACAG
GACGCAAGCTTTCTAGACC

BO11967.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:34:19
Subject Length Description Subject Range Query Range Score Percent Strand
CG14193-PA 540 CG14193-RA 1..537 17..553 2685 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 22:28:16
Subject Length Description Subject Range Query Range Score Percent Strand
HP1D3csd-RA 816 CG14193-RA 63..599 17..553 2685 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 22:28:10
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 19190276..19190812 17..553 2685 100 Plus
Blast to na_te.dros performed on 2015-02-10 22:28:13 has no hits.

BO11967.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:22:03 Download gff for BO11967.5prime
Subject Subject Range Query Range Percent Splice Strand
CG14193-PA 1..540 17..556 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 04:52:01 Download gff for BO11967.5prime
Subject Subject Range Query Range Percent Splice Strand
CG14193-PA 1..540 17..556 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-22 05:39:56 Download gff for BO11967.5prime
Subject Subject Range Query Range Percent Splice Strand
HP1D3csd-RA 63..603 17..557 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 00:11:11 Download gff for BO11967.5prime
Subject Subject Range Query Range Percent Splice Strand
HP1D3csd-RA 63..603 17..557 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 00:11:11 Download gff for BO11967.5prime
Subject Subject Range Query Range Percent Splice Strand
X 19190276..19190816 17..557 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-22 05:39:56 Download gff for BO11967.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 19084309..19084849 17..557 99   Plus

BO11967.complete Sequence

571 bp assembled on 2006-10-11

GenBank Submission: FJ632263

> BO11967.complete
GAAGTTATCAGTCGACATGGCGGACAAAGAAAACAGCCCCAACAACAAGA
ACACAGGTGGTTTCCCCGCGGAGGAGGAAAAGCAGAAGGAGAACGATCAG
CAGAAGGAGAACGATCAGCAGAAGGAGAACGATCAGCAGGAGGAAGTGCA
GGAAGAGCCGACAAAGGATGAATCCAAGGAGGCCGGTTCGACGCCGCCTC
CAAAGCACATGGGAGTTCACAATTCGGCTCGGGCAGAGCTGGCTCGGCTG
CTCGTCGAGTTGTTGGTACAACAGGCAGAACTGGATGCAACCAACGGTGG
CAGCGTGTCAGGGAATCTCGATGGCGGCAATTCCAATGAGTCCCAACCGT
TGAACGTGCCGCCTACGGATGCGCTCCTGGTCCGCGGCAAAGCAATTGAG
AATGTTATGTACAGCTATATGCTTGGTGACACGGTCTACTTCATTGTCAC
CTGGAAGGGATCCAAGTGGGGGGAAGCCGTGCCTGTTCAGGAGATCAAAC
ATGTGCACCCCAAGCTACTCATTGACTACATTAAGAGCCTGAAGCTACAG
GACGCAAGCTTTCTAGACCAT

BO11967.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 23:58:59
Subject Length Description Subject Range Query Range Score Percent Strand
HP1D3csd-RA 540 CG14193-PA 1..537 17..553 2685 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 23:59:00
Subject Length Description Subject Range Query Range Score Percent Strand
HP1D3csd-RA 816 CG14193-RA 63..599 17..553 2685 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 23:58:57
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 19190276..19190812 17..553 2685 100 Plus
Blast to na_te.dros performed on 2014-11-27 23:58:58 has no hits.

BO11967.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 13:56:37 Download gff for BO11967.complete
Subject Subject Range Query Range Percent Splice Strand
CG14193-RA 1..540 17..556 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:07:16 Download gff for BO11967.complete
Subject Subject Range Query Range Percent Splice Strand
CG14193-RA 63..603 17..557 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:42:57 Download gff for BO11967.complete
Subject Subject Range Query Range Percent Splice Strand
HP1D3csd-RA 63..599 17..555 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 13:56:37 Download gff for BO11967.complete
Subject Subject Range Query Range Percent Splice Strand
CG14193-RA 63..603 17..557 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:12:07 Download gff for BO11967.complete
Subject Subject Range Query Range Percent Splice Strand
HP1D3csd-RA 63..599 17..555 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:12:07 Download gff for BO11967.complete
Subject Subject Range Query Range Percent Splice Strand
X 19190276..19190812 17..555 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:42:57 Download gff for BO11967.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 19084309..19084845 17..555 99   Plus

BO11967.pep Sequence

Translation from 16 to 571

> BO11967.pep
MADKENSPNNKNTGGFPAEEEKQKENDQQKENDQQKENDQQEEVQEEPTK
DESKEAGSTPPPKHMGVHNSARAELARLLVELLVQQAELDATNGGSVSGN
LDGGNSNESQPLNVPPTDALLVRGKAIENVMYSYMLGDTVYFIVTWKGSK
WGEAVPVQEIKHVHPKLLIDYIKSLKLQDASFLDH

BO11967.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 21:02:49
Subject Length Description Subject Range Query Range Score Percent Strand
HP1D3csd-PA 179 CG14193-PA 1..179 1..179 934 100 Plus