Clone Sequence Records
BO11967.3prime Sequence
569 bp (568 high quality bases) assembled on 2006-04-19
> BO11967.3prime
ATGGTCTAGAAAGCTTGCGTCCTGTAGCTTCAGGCTCTTAATGTAGTCAA
TGAGTAGCTTGGGGTGCACATGTTTGATCTCCTGAACAGGCACGGCTTCC
CCCCACTTGGATCCCTTCCAGGTGACAATGAAGTAGACCGTGTCACCAAG
CATATAGCTGTACATAACATTCTCAATTGCTTTGCCGCGGACCAGGAGCG
CATCCGTAGGCGGCACGTTCAACGGTTGGGACTCATTGGAATTGCCGCCA
TCGAGATTCCCTGACACGCTGCCACCGTTGGTTGCATCCAGTTCTGCCTG
TTGTACCAACAACTCGACGAGCAGCCGAGCCAGCTCTGCCCGAGCCGAAT
TGTGAACTCCCATGTGCTTTGGAGGCGGCGTCGAACCGGCCTCCTTGGAT
TCATCCTTTGTCGGCTCTTCCTGCACTTCCTCCTGCTGATCGTTCTCCTT
CTGCTGATCGTTCTCCTTCTGCTGATCGTTCTCCTTCTGCTTTTCCTCCT
CCGCGGGGAAACCACCTGTGTTCTTGTTGTTGGGGCTGTTTTCTTTGTCC
GCCATGTCGACTGATAACT
BO11967.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:34:19
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG14193-PA | 540 | CG14193-RA | 1..537 | 555..19 | 2685 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 22:38:19
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
HP1D3csd-RA | 816 | CG14193-RA | 63..599 | 555..19 | 2685 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 22:38:12
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 19190276..19190812 | 555..19 | 2685 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-10 22:38:16 has no hits.
BO11967.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:22:02 Download gff for
BO11967.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14193-PA | 1..540 | 16..555 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 04:51:59 Download gff for
BO11967.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14193-PA | 1..540 | 16..555 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 19:57:20 Download gff for
BO11967.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
HP1D3csd-RA | 63..603 | 15..555 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 00:03:51 Download gff for
BO11967.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
HP1D3csd-RA | 63..603 | 15..555 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 00:03:51 Download gff for
BO11967.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 19190276..19190816 | 15..555 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 19:57:20 Download gff for
BO11967.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 19084309..19084849 | 15..555 | 99 | | Minus |
BO11967.5prime Sequence
569 bp (568 high quality bases) assembled on 2006-04-19
> BO11967.5prime
GAAGTTATCAGTCGACATGGCGGACAAAGAAAACAGCCCCAACAACAAGA
ACACAGGTGGTTTCCCCGCGGAGGAGGAAAAGCAGAAGGAGAACGATCAG
CAGAAGGAGAACGATCAGCAGAAGGAGAACGATCAGCAGGAGGAAGTGCA
GGAAGAGCCGACAAAGGATGAATCCAAGGAGGCCGGTTCGACGCCGCCTC
CAAAGCACATGGGAGTTCACAATTCGGCTCGGGCAGAGCTGGCTCGGCTG
CTCGTCGAGTTGTTGGTACAACAGGCAGAACTGGATGCAACCAACGGTGG
CAGCGTGTCAGGGAATCTCGATGGCGGCAATTCCAATGAGTCCCAACCGT
TGAACGTGCCGCCTACGGATGCGCTCCTGGTCCGCGGCAAAGCAATTGAG
AATGTTATGTACAGCTATATGCTTGGTGACACGGTCTACTTCATTGTCAC
CTGGAAGGGATCCAAGTGGGGGGAAGCCGTGCCTGTTCAGGAGATCAAAC
ATGTGCACCCCAAGCTACTCATTGACTACATTAAGAGCCTGAAGCTACAG
GACGCAAGCTTTCTAGACC
BO11967.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:34:19
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG14193-PA | 540 | CG14193-RA | 1..537 | 17..553 | 2685 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 22:28:16
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
HP1D3csd-RA | 816 | CG14193-RA | 63..599 | 17..553 | 2685 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 22:28:10
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 19190276..19190812 | 17..553 | 2685 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-10 22:28:13 has no hits.
BO11967.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:22:03 Download gff for
BO11967.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14193-PA | 1..540 | 17..556 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 04:52:01 Download gff for
BO11967.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14193-PA | 1..540 | 17..556 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-22 05:39:56 Download gff for
BO11967.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
HP1D3csd-RA | 63..603 | 17..557 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 00:11:11 Download gff for
BO11967.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
HP1D3csd-RA | 63..603 | 17..557 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 00:11:11 Download gff for
BO11967.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 19190276..19190816 | 17..557 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-22 05:39:56 Download gff for
BO11967.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 19084309..19084849 | 17..557 | 99 | | Plus |
BO11967.complete Sequence
571 bp assembled on 2006-10-11
GenBank Submission: FJ632263
> BO11967.complete
GAAGTTATCAGTCGACATGGCGGACAAAGAAAACAGCCCCAACAACAAGA
ACACAGGTGGTTTCCCCGCGGAGGAGGAAAAGCAGAAGGAGAACGATCAG
CAGAAGGAGAACGATCAGCAGAAGGAGAACGATCAGCAGGAGGAAGTGCA
GGAAGAGCCGACAAAGGATGAATCCAAGGAGGCCGGTTCGACGCCGCCTC
CAAAGCACATGGGAGTTCACAATTCGGCTCGGGCAGAGCTGGCTCGGCTG
CTCGTCGAGTTGTTGGTACAACAGGCAGAACTGGATGCAACCAACGGTGG
CAGCGTGTCAGGGAATCTCGATGGCGGCAATTCCAATGAGTCCCAACCGT
TGAACGTGCCGCCTACGGATGCGCTCCTGGTCCGCGGCAAAGCAATTGAG
AATGTTATGTACAGCTATATGCTTGGTGACACGGTCTACTTCATTGTCAC
CTGGAAGGGATCCAAGTGGGGGGAAGCCGTGCCTGTTCAGGAGATCAAAC
ATGTGCACCCCAAGCTACTCATTGACTACATTAAGAGCCTGAAGCTACAG
GACGCAAGCTTTCTAGACCAT
BO11967.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 23:58:59
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
HP1D3csd-RA | 540 | CG14193-PA | 1..537 | 17..553 | 2685 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 23:59:00
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
HP1D3csd-RA | 816 | CG14193-RA | 63..599 | 17..553 | 2685 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 23:58:57
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 19190276..19190812 | 17..553 | 2685 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 23:58:58 has no hits.
BO11967.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 13:56:37 Download gff for
BO11967.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14193-RA | 1..540 | 17..556 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:07:16 Download gff for
BO11967.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14193-RA | 63..603 | 17..557 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:42:57 Download gff for
BO11967.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
HP1D3csd-RA | 63..599 | 17..555 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 13:56:37 Download gff for
BO11967.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14193-RA | 63..603 | 17..557 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:12:07 Download gff for
BO11967.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
HP1D3csd-RA | 63..599 | 17..555 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:12:07 Download gff for
BO11967.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 19190276..19190812 | 17..555 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:42:57 Download gff for
BO11967.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 19084309..19084845 | 17..555 | 99 | | Plus |
BO11967.pep Sequence
Translation from 16 to 571
> BO11967.pep
MADKENSPNNKNTGGFPAEEEKQKENDQQKENDQQKENDQQEEVQEEPTK
DESKEAGSTPPPKHMGVHNSARAELARLLVELLVQQAELDATNGGSVSGN
LDGGNSNESQPLNVPPTDALLVRGKAIENVMYSYMLGDTVYFIVTWKGSK
WGEAVPVQEIKHVHPKLLIDYIKSLKLQDASFLDH
BO11967.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 21:02:49
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
HP1D3csd-PA | 179 | CG14193-PA | 1..179 | 1..179 | 934 | 100 | Plus |