Clone BO11972 Report

Search the DGRC for BO11972

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:119
Well:72
Vector:pDNR-Dual
Associated Gene/TranscriptCG4933-RA
Protein status:BO11972.pep: validated full length
Sequenced Size:1075

Clone Sequence Records

BO11972.3prime Sequence

902 bp (791 high quality bases) assembled on 2006-04-19

> BO11972.3prime
ATGGTCTAGAAAGCTTGCGTCATCCCGCCAGCTGACCAGCACTTCGTCCG
TTCGAAATCGCTGAGTCACATAAGATTCCTCAAAGGGCATCCTAGTGCCA
GAGCGGAACATTTCTGCACCAGCATGGGCAATCATTAGTCCGTTGTCTAT
GCAGTAACGTTCATCAGTGGCAAAGAGTTTGCCTCCGCGTTCCTCGCACA
TAATACGCATCATCTCCTGGAGTCGCTCATTGCAACCCACACCTCCAACT
ATAAGGACCTCATTTGAGCCGCAGTGTGCCATGGCGCGCTCTGTGATCTC
CACCAACATGGCGAAGATGGTCTCCTGCAGCGAATAGCAAAGATCGGCTT
GGCTGTAATTATTGACCTCTTCTTCCTGTGGCTTTTTTCTCTTATTTTGC
CTCTTGCCCGGCTCTGCCAGGTCCTCGATGTAGGATAAAATCCCCGAGAA
GCTGACATCCATGCCCTTAACCACATAGGGCAGTTTAATATAACGATTGC
TCGACTTGGCCAGCTGCTCGATGTTGTAGCCCGGACTAGGATCGTTGGAC
AGCTTAATGATGCGGGCGAATCGATCCAGGCAATTGCCCACTGCAATGTC
TATAGTTTCGCCAAAGATGCGATATCGCTTATTGGAGTAGGCAATAACCT
GTGTGTTTCCACCGCTCACATAGAGAACTGTAGGATTCTGGGCACCGGTG
ATCAGGCGACCCATCTCGATGTGTCCAATGCAGTGATTTACGCCCAGCAG
CGGGATATTCCACAAGAGCGACAAAGTGCGAGCCACAATGGCGCCAACCA
GCAAAGGAGGAGCCATTCCTGGGCCTTTTGTGTAACAAATAACATCTAGA
TCAGAGGATTTCAATTGGGCTTCCTTTAGACTGGATTCACCCAGCCCAGG
AT

BO11972.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:34:26
Subject Length Description Subject Range Query Range Score Percent Strand
CG4933-PA 1044 CG4933-RA 172..1041 888..19 4350 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-01-31 20:14:47
Subject Length Description Subject Range Query Range Score Percent Strand
CG4933-RA 1180 CG4933-RA 220..1104 902..19 4385 99.8 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-01-31 20:14:41
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 16352271..16352917 902..257 3170 99.7 Minus
3L 28110227 3L 16352969..16353210 260..19 1210 100 Minus
Blast to na_te.dros performed on 2015-01-31 20:14:44 has no hits.

BO11972.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:22:12 Download gff for BO11972.3prime
Subject Subject Range Query Range Percent Splice Strand
CG4933-PA 157..1044 15..902 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 04:52:15 Download gff for BO11972.3prime
Subject Subject Range Query Range Percent Splice Strand
CG4933-PA 157..1044 15..902 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-07 11:37:58 Download gff for BO11972.3prime
Subject Subject Range Query Range Percent Splice Strand
CG4933-RA 220..1107 15..902 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-01-31 22:50:39 Download gff for BO11972.3prime
Subject Subject Range Query Range Percent Splice Strand
CG4933-RA 220..1107 15..902 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-01-31 22:50:39 Download gff for BO11972.3prime
Subject Subject Range Query Range Percent Splice Strand
3L 16352271..16352915 259..902 99 -> Minus
3L 16352971..16353213 15..258 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-07 11:37:58 Download gff for BO11972.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 16345371..16346015 259..902 99 -> Minus
arm_3L 16346071..16346313 15..258 99   Minus

BO11972.5prime Sequence

856 bp (854 high quality bases) assembled on 2006-04-19

> BO11972.5prime
GAAGTTATCAGTCGACATGGTTTGCGCTTTGGGTATTGAAGGCAGTGCCA
ATAAAATTGGCATTGGCATAATTCGAGATGGTAAAGTACTGGCGAACGTA
CGTAGAACGTACATTACCCCACCAGGAGAAGGTTTCCTGCCCAAGGAAAC
GGCCAAACATCACAGGGAAGCCATCCTGGGCTTGGTGGAATCCAGTCTAA
AGGAAGCCCAATTGAAATCCTCTGATCTAGATGTTATTTGTTACACAAAA
GGCCCAGGAATGGCTCCTCCTTTGCTGGTTGGCGCCATTGTGGCTCGCAC
TTTGTCGCTCTTGTGGAATATCCCGCTGCTGGGCGTAAATCACTGCATTG
GACACATCGAGATGGGTCGCCTGATCACCGGTGCCCAGAATCCTACAGTT
CTCTATGTGAGCGGTGGAAACACACAGGTTATTGCCTACTCCAATAAGCG
ATATCGCATCTTTGGCGAAACTATAGACATTGCAGTGGGCAATTGCCTGG
ATCGATTCGCCCGCATCATTAAGCTGTCCAACGATCCTAGTCCGGGCTAC
AACATCGAGCAGCTGGCCAAGTCGAGCAATCGTTATATTAAACTGCCCTA
TGTGGTTAAGGGCATGGATGTCAGCTTCTCGGGGATTTTATCCTACATCG
AGGACCTGGCAGAGCCGGGCAAGAGGCAAAATAAGAGAAAAAAGCCACAG
GAAGAAGAGGTCAATAATTACAGCCAAGCCGATCTTTGCTATTCGCTGCA
NGAGACCATCTTCGCCATGTTGGTGGAGATCACAGAGCGCGCCATGGCAC
ACTGCGGCTCANATGAGGTCCTTATAGTTGGAGGTGTGGGTTGCAATGAG
CGACTC

BO11972.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:34:26
Subject Length Description Subject Range Query Range Score Percent Strand
CG4933-PA 1044 CG4933-RA 1..840 17..856 4162 99.7 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 20:05:32
Subject Length Description Subject Range Query Range Score Percent Strand
CG4933-RA 1180 CG4933-RA 62..903 15..856 4188 99.8 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 20:05:30
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 16352228..16352917 130..819 3428 99.7 Plus
3L 28110227 3L 16352052..16352170 15..133 595 100 Plus
3L 28110227 3L 16352969..16353009 816..856 205 100 Plus
Blast to na_te.dros performed on 2015-02-12 20:05:31 has no hits.

BO11972.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:22:13 Download gff for BO11972.5prime
Subject Subject Range Query Range Percent Splice Strand
CG4933-PA 1..840 17..856 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 04:52:17 Download gff for BO11972.5prime
Subject Subject Range Query Range Percent Splice Strand
CG4933-PA 1..840 17..856 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 11:54:56 Download gff for BO11972.5prime
Subject Subject Range Query Range Percent Splice Strand
CG4933-RA 62..903 15..856 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 01:40:55 Download gff for BO11972.5prime
Subject Subject Range Query Range Percent Splice Strand
CG4933-RA 62..903 15..856 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 01:40:55 Download gff for BO11972.5prime
Subject Subject Range Query Range Percent Splice Strand
3L 16352052..16352168 15..131 100 -> Plus
3L 16352230..16352915 132..817 99 -> Plus
3L 16352971..16353009 818..856 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 11:54:56 Download gff for BO11972.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 16346071..16346109 818..856 100   Plus
arm_3L 16345152..16345268 15..131 100 -> Plus
arm_3L 16345330..16346015 132..817 99 -> Plus

BO11972.complete Sequence

1075 bp assembled on 2006-10-11

GenBank Submission: FJ632264

> BO11972.complete
GAAGTTATCAGTCGACATGGTTTGCGCTTTGGGTATTGAAGGCAGTGCCA
ATAAAATTGGCATTGGCATAATTCGAGATGGTAAAGTACTGGCGAACGTA
CGTAGAACGTACATTACCCCACCAGGAGAAGGTTTCCTGCCCAAGGAAAC
GGCCAAACATCACAGGGAAGCCATCCTGGGCTTGGTGGAATCCAGTCTAA
AGGAAGCCCAATTGAAATCCTCTGATCTAGATGTTATTTGTTACACAAAA
GGCCCAGGAATGGCTCCTCCTTTGCTGGTTGGCGCCATTGTGGCTCGCAC
TTTGTCGCTCTTGTGGAATATCCCGCTGCTGGGCGTAAATCACTGCATTG
GACACATCGAGATGGGTCGCCTGATCACCGGTGCCCAGAATCCTACAGTT
CTCTATGTGAGCGGTGGAAACACACAGGTTATTGCCTACTCCAATAAGCG
ATATCGCATCTTTGGCGAAACTATAGACATTGCAGTGGGCAATTGCCTGG
ATCGATTCGCCCGCATCATTAAGCTGTCCAACGATCCTAGTCCGGGCTAC
AACATCGAGCAGCTGGCCAAGTCGAGCAATCGTTATATTAAACTGCCCTA
TGTGGTTAAGGGCATGGATGTCAGCTTCTCGGGGATTTTATCCTACATCG
AGGACCTGGCAGAGCCGGGCAAGAGGCAAAATAAGAGAAAAAAGCCACAG
GAAGAAGAGGTCAATAATTACAGCCAAGCCGATCTTTGCTATTCGCTGCA
GGAGACCATCTTCGCCATGTTGGTGGAGATCACAGAGCGCGCCATGGCAC
ACTGCGGCTCAAATGAGGTCCTTATAGTTGGAGGTGTGGGTTGCAATGAG
CGACTCCAGGAGATGATGCGTATTATGTGCGAGGAACGCGGAGGCAAACT
CTTTGCCACTGATGAACGTTACTGCATAGACAACGGACTAATGATTGCCC
ATGCTGGTGCAGAAATGTTCCGCTCTGGCACTAGGATGCCCTTTGAGGAA
TCTTATGTGACTCAGCGATTTCGAACGGACGAAGTGCTGGTCAGCTGGCG
GGATGACGCAAGCTTTCTAGACCAT

BO11972.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 01:17:48
Subject Length Description Subject Range Query Range Score Percent Strand
CG4933-RA 1044 CG4933-PA 1..1041 17..1057 5205 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:17:49
Subject Length Description Subject Range Query Range Score Percent Strand
CG4933-RA 1180 CG4933-RA 62..1104 15..1057 5215 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 01:17:47
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 16352228..16352917 130..819 3450 100 Plus
3L 28110227 3L 16352969..16353210 816..1057 1210 100 Plus
3L 28110227 3L 16352052..16352170 15..133 595 100 Plus
Blast to na_te.dros performed on 2014-11-28 01:17:47 has no hits.

BO11972.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 13:58:23 Download gff for BO11972.complete
Subject Subject Range Query Range Percent Splice Strand
CG4933-RA 1..1044 17..1061 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:09:53 Download gff for BO11972.complete
Subject Subject Range Query Range Percent Splice Strand
CG4933-RA 13..1058 15..1061 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:45:23 Download gff for BO11972.complete
Subject Subject Range Query Range Percent Splice Strand
CG4933-RA 64..1104 17..1059 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 13:58:23 Download gff for BO11972.complete
Subject Subject Range Query Range Percent Splice Strand
CG4933-RA 13..1058 15..1061 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:50:11 Download gff for BO11972.complete
Subject Subject Range Query Range Percent Splice Strand
CG4933-RA 64..1104 17..1059 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:50:11 Download gff for BO11972.complete
Subject Subject Range Query Range Percent Splice Strand
3L 16352054..16352168 17..131 100 -> Plus
3L 16352230..16352915 132..817 100 -> Plus
3L 16352971..16353210 818..1059 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:45:23 Download gff for BO11972.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 16345154..16345268 17..131 100 -> Plus
arm_3L 16345330..16346015 132..817 100 -> Plus
arm_3L 16346071..16346310 818..1059 99   Plus

BO11972.pep Sequence

Translation from 16 to 1075

> BO11972.pep
MVCALGIEGSANKIGIGIIRDGKVLANVRRTYITPPGEGFLPKETAKHHR
EAILGLVESSLKEAQLKSSDLDVICYTKGPGMAPPLLVGAIVARTLSLLW
NIPLLGVNHCIGHIEMGRLITGAQNPTVLYVSGGNTQVIAYSNKRYRIFG
ETIDIAVGNCLDRFARIIKLSNDPSPGYNIEQLAKSSNRYIKLPYVVKGM
DVSFSGILSYIEDLAEPGKRQNKRKKPQEEEVNNYSQADLCYSLQETIFA
MLVEITERAMAHCGSNEVLIVGGVGCNERLQEMMRIMCEERGGKLFATDE
RYCIDNGLMIAHAGAEMFRSGTRMPFEESYVTQRFRTDEVLVSWRDDASF
LDH

BO11972.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 21:00:13
Subject Length Description Subject Range Query Range Score Percent Strand
CG4933-PA 347 CG4933-PA 1..347 1..347 1800 100 Plus
CG14231-PB 409 CG14231-PB 28..362 5..316 274 30.9 Plus
CG14231-PA 409 CG14231-PA 28..362 5..316 274 30.9 Plus