Clone Sequence Records
BO11972.3prime Sequence
902 bp (791 high quality bases) assembled on 2006-04-19
> BO11972.3prime
ATGGTCTAGAAAGCTTGCGTCATCCCGCCAGCTGACCAGCACTTCGTCCG
TTCGAAATCGCTGAGTCACATAAGATTCCTCAAAGGGCATCCTAGTGCCA
GAGCGGAACATTTCTGCACCAGCATGGGCAATCATTAGTCCGTTGTCTAT
GCAGTAACGTTCATCAGTGGCAAAGAGTTTGCCTCCGCGTTCCTCGCACA
TAATACGCATCATCTCCTGGAGTCGCTCATTGCAACCCACACCTCCAACT
ATAAGGACCTCATTTGAGCCGCAGTGTGCCATGGCGCGCTCTGTGATCTC
CACCAACATGGCGAAGATGGTCTCCTGCAGCGAATAGCAAAGATCGGCTT
GGCTGTAATTATTGACCTCTTCTTCCTGTGGCTTTTTTCTCTTATTTTGC
CTCTTGCCCGGCTCTGCCAGGTCCTCGATGTAGGATAAAATCCCCGAGAA
GCTGACATCCATGCCCTTAACCACATAGGGCAGTTTAATATAACGATTGC
TCGACTTGGCCAGCTGCTCGATGTTGTAGCCCGGACTAGGATCGTTGGAC
AGCTTAATGATGCGGGCGAATCGATCCAGGCAATTGCCCACTGCAATGTC
TATAGTTTCGCCAAAGATGCGATATCGCTTATTGGAGTAGGCAATAACCT
GTGTGTTTCCACCGCTCACATAGAGAACTGTAGGATTCTGGGCACCGGTG
ATCAGGCGACCCATCTCGATGTGTCCAATGCAGTGATTTACGCCCAGCAG
CGGGATATTCCACAAGAGCGACAAAGTGCGAGCCACAATGGCGCCAACCA
GCAAAGGAGGAGCCATTCCTGGGCCTTTTGTGTAACAAATAACATCTAGA
TCAGAGGATTTCAATTGGGCTTCCTTTAGACTGGATTCACCCAGCCCAGG
AT
BO11972.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:34:26
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4933-PA | 1044 | CG4933-RA | 172..1041 | 888..19 | 4350 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-01-31 20:14:47
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4933-RA | 1180 | CG4933-RA | 220..1104 | 902..19 | 4385 | 99.8 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-01-31 20:14:41
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 16352271..16352917 | 902..257 | 3170 | 99.7 | Minus |
3L | 28110227 | 3L | 16352969..16353210 | 260..19 | 1210 | 100 | Minus |
Blast to na_te.dros performed on 2015-01-31 20:14:44 has no hits.
BO11972.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:22:12 Download gff for
BO11972.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4933-PA | 157..1044 | 15..902 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 04:52:15 Download gff for
BO11972.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4933-PA | 157..1044 | 15..902 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-07 11:37:58 Download gff for
BO11972.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4933-RA | 220..1107 | 15..902 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-01-31 22:50:39 Download gff for
BO11972.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4933-RA | 220..1107 | 15..902 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-01-31 22:50:39 Download gff for
BO11972.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 16352271..16352915 | 259..902 | 99 | -> | Minus |
3L | 16352971..16353213 | 15..258 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-07 11:37:58 Download gff for
BO11972.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 16345371..16346015 | 259..902 | 99 | -> | Minus |
arm_3L | 16346071..16346313 | 15..258 | 99 | | Minus |
BO11972.5prime Sequence
856 bp (854 high quality bases) assembled on 2006-04-19
> BO11972.5prime
GAAGTTATCAGTCGACATGGTTTGCGCTTTGGGTATTGAAGGCAGTGCCA
ATAAAATTGGCATTGGCATAATTCGAGATGGTAAAGTACTGGCGAACGTA
CGTAGAACGTACATTACCCCACCAGGAGAAGGTTTCCTGCCCAAGGAAAC
GGCCAAACATCACAGGGAAGCCATCCTGGGCTTGGTGGAATCCAGTCTAA
AGGAAGCCCAATTGAAATCCTCTGATCTAGATGTTATTTGTTACACAAAA
GGCCCAGGAATGGCTCCTCCTTTGCTGGTTGGCGCCATTGTGGCTCGCAC
TTTGTCGCTCTTGTGGAATATCCCGCTGCTGGGCGTAAATCACTGCATTG
GACACATCGAGATGGGTCGCCTGATCACCGGTGCCCAGAATCCTACAGTT
CTCTATGTGAGCGGTGGAAACACACAGGTTATTGCCTACTCCAATAAGCG
ATATCGCATCTTTGGCGAAACTATAGACATTGCAGTGGGCAATTGCCTGG
ATCGATTCGCCCGCATCATTAAGCTGTCCAACGATCCTAGTCCGGGCTAC
AACATCGAGCAGCTGGCCAAGTCGAGCAATCGTTATATTAAACTGCCCTA
TGTGGTTAAGGGCATGGATGTCAGCTTCTCGGGGATTTTATCCTACATCG
AGGACCTGGCAGAGCCGGGCAAGAGGCAAAATAAGAGAAAAAAGCCACAG
GAAGAAGAGGTCAATAATTACAGCCAAGCCGATCTTTGCTATTCGCTGCA
NGAGACCATCTTCGCCATGTTGGTGGAGATCACAGAGCGCGCCATGGCAC
ACTGCGGCTCANATGAGGTCCTTATAGTTGGAGGTGTGGGTTGCAATGAG
CGACTC
BO11972.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:34:26
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4933-PA | 1044 | CG4933-RA | 1..840 | 17..856 | 4162 | 99.7 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 20:05:32
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4933-RA | 1180 | CG4933-RA | 62..903 | 15..856 | 4188 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 20:05:30
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 16352228..16352917 | 130..819 | 3428 | 99.7 | Plus |
3L | 28110227 | 3L | 16352052..16352170 | 15..133 | 595 | 100 | Plus |
3L | 28110227 | 3L | 16352969..16353009 | 816..856 | 205 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-12 20:05:31 has no hits.
BO11972.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:22:13 Download gff for
BO11972.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4933-PA | 1..840 | 17..856 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 04:52:17 Download gff for
BO11972.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4933-PA | 1..840 | 17..856 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 11:54:56 Download gff for
BO11972.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4933-RA | 62..903 | 15..856 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 01:40:55 Download gff for
BO11972.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4933-RA | 62..903 | 15..856 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 01:40:55 Download gff for
BO11972.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 16352052..16352168 | 15..131 | 100 | -> | Plus |
3L | 16352230..16352915 | 132..817 | 99 | -> | Plus |
3L | 16352971..16353009 | 818..856 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 11:54:56 Download gff for
BO11972.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 16346071..16346109 | 818..856 | 100 | | Plus |
arm_3L | 16345152..16345268 | 15..131 | 100 | -> | Plus |
arm_3L | 16345330..16346015 | 132..817 | 99 | -> | Plus |
BO11972.complete Sequence
1075 bp assembled on 2006-10-11
GenBank Submission: FJ632264
> BO11972.complete
GAAGTTATCAGTCGACATGGTTTGCGCTTTGGGTATTGAAGGCAGTGCCA
ATAAAATTGGCATTGGCATAATTCGAGATGGTAAAGTACTGGCGAACGTA
CGTAGAACGTACATTACCCCACCAGGAGAAGGTTTCCTGCCCAAGGAAAC
GGCCAAACATCACAGGGAAGCCATCCTGGGCTTGGTGGAATCCAGTCTAA
AGGAAGCCCAATTGAAATCCTCTGATCTAGATGTTATTTGTTACACAAAA
GGCCCAGGAATGGCTCCTCCTTTGCTGGTTGGCGCCATTGTGGCTCGCAC
TTTGTCGCTCTTGTGGAATATCCCGCTGCTGGGCGTAAATCACTGCATTG
GACACATCGAGATGGGTCGCCTGATCACCGGTGCCCAGAATCCTACAGTT
CTCTATGTGAGCGGTGGAAACACACAGGTTATTGCCTACTCCAATAAGCG
ATATCGCATCTTTGGCGAAACTATAGACATTGCAGTGGGCAATTGCCTGG
ATCGATTCGCCCGCATCATTAAGCTGTCCAACGATCCTAGTCCGGGCTAC
AACATCGAGCAGCTGGCCAAGTCGAGCAATCGTTATATTAAACTGCCCTA
TGTGGTTAAGGGCATGGATGTCAGCTTCTCGGGGATTTTATCCTACATCG
AGGACCTGGCAGAGCCGGGCAAGAGGCAAAATAAGAGAAAAAAGCCACAG
GAAGAAGAGGTCAATAATTACAGCCAAGCCGATCTTTGCTATTCGCTGCA
GGAGACCATCTTCGCCATGTTGGTGGAGATCACAGAGCGCGCCATGGCAC
ACTGCGGCTCAAATGAGGTCCTTATAGTTGGAGGTGTGGGTTGCAATGAG
CGACTCCAGGAGATGATGCGTATTATGTGCGAGGAACGCGGAGGCAAACT
CTTTGCCACTGATGAACGTTACTGCATAGACAACGGACTAATGATTGCCC
ATGCTGGTGCAGAAATGTTCCGCTCTGGCACTAGGATGCCCTTTGAGGAA
TCTTATGTGACTCAGCGATTTCGAACGGACGAAGTGCTGGTCAGCTGGCG
GGATGACGCAAGCTTTCTAGACCAT
BO11972.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 01:17:48
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4933-RA | 1044 | CG4933-PA | 1..1041 | 17..1057 | 5205 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:17:49
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4933-RA | 1180 | CG4933-RA | 62..1104 | 15..1057 | 5215 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 01:17:47
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 16352228..16352917 | 130..819 | 3450 | 100 | Plus |
3L | 28110227 | 3L | 16352969..16353210 | 816..1057 | 1210 | 100 | Plus |
3L | 28110227 | 3L | 16352052..16352170 | 15..133 | 595 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 01:17:47 has no hits.
BO11972.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 13:58:23 Download gff for
BO11972.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4933-RA | 1..1044 | 17..1061 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:09:53 Download gff for
BO11972.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4933-RA | 13..1058 | 15..1061 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:45:23 Download gff for
BO11972.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4933-RA | 64..1104 | 17..1059 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 13:58:23 Download gff for
BO11972.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4933-RA | 13..1058 | 15..1061 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:50:11 Download gff for
BO11972.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4933-RA | 64..1104 | 17..1059 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:50:11 Download gff for
BO11972.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 16352054..16352168 | 17..131 | 100 | -> | Plus |
3L | 16352230..16352915 | 132..817 | 100 | -> | Plus |
3L | 16352971..16353210 | 818..1059 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:45:23 Download gff for
BO11972.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 16345154..16345268 | 17..131 | 100 | -> | Plus |
arm_3L | 16345330..16346015 | 132..817 | 100 | -> | Plus |
arm_3L | 16346071..16346310 | 818..1059 | 99 | | Plus |
BO11972.pep Sequence
Translation from 16 to 1075
> BO11972.pep
MVCALGIEGSANKIGIGIIRDGKVLANVRRTYITPPGEGFLPKETAKHHR
EAILGLVESSLKEAQLKSSDLDVICYTKGPGMAPPLLVGAIVARTLSLLW
NIPLLGVNHCIGHIEMGRLITGAQNPTVLYVSGGNTQVIAYSNKRYRIFG
ETIDIAVGNCLDRFARIIKLSNDPSPGYNIEQLAKSSNRYIKLPYVVKGM
DVSFSGILSYIEDLAEPGKRQNKRKKPQEEEVNNYSQADLCYSLQETIFA
MLVEITERAMAHCGSNEVLIVGGVGCNERLQEMMRIMCEERGGKLFATDE
RYCIDNGLMIAHAGAEMFRSGTRMPFEESYVTQRFRTDEVLVSWRDDASF
LDH
BO11972.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 21:00:13
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4933-PA | 347 | CG4933-PA | 1..347 | 1..347 | 1800 | 100 | Plus |
CG14231-PB | 409 | CG14231-PB | 28..362 | 5..316 | 274 | 30.9 | Plus |
CG14231-PA | 409 | CG14231-PA | 28..362 | 5..316 | 274 | 30.9 | Plus |