Clone Sequence Records
BO11973.5prime Sequence
611 bp (610 high quality bases) assembled on 2006-04-19
> BO11973.5prime
GAAGTTATCAGTCGACATGTCTGCCGAGGCGAATCCCGAGATGGATAAGG
AGCACCACGAGTCCCCATTCGCAGCGAACCGCAAGGCCGGTGCCAGCGGC
GCCGGCAAACAGGACTCGAACTGCCGCACCTGCAACGATTTCAAGTCGTG
GTCCAAGCAGCAACGCCTCATCTCCAACGTGCAGAGCGCCAAGGTGAAGC
ACATGGCCGCCGCCGAAAAGCTGACCGTCAACGCCGCCGAAGATCCGCTG
CCCCGCGACGACTGCCCGCTGGACAAGGTGAGGCTGGGAATTTCCACCTG
GGGACTGCTCCACACCATGGCCGCCTTTTACTCGGACAACCCCACGGACA
CCGAGAAGCGCGACATGAAGACCTTTTTTGAGGTTCTGTCGCGCCTTTAC
CCCTGCGAGTTTTGCGCCAAGGACTTTCGCACCGACCTGGACGTCAACCC
CATCAATGTGAACTCCCAAAAGGAGCTAGCACTGTGGCTGTGCAAGTTCC
ACAACCGAGTGAACGACAAACTGGGCAAACCGCTCTTCGATTGCACCAAG
GTGAACGAGAGGTGGCGCGACGGCTGGCTAGACGGCTCCTGCGACGCAAG
CTTTCTAGACC
BO11973.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:34:28
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG12534-PA | 582 | CG12534-RA | 1..579 | 17..595 | 2895 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-04 05:29:29
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Alr-RB | 1362 | CG12534-RB | 464..1043 | 16..595 | 2900 | 100 | Plus |
Alr-RA | 1107 | CG12534-RA | 209..788 | 16..595 | 2900 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-04 05:29:25
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 19749386..19749629 | 192..435 | 1220 | 100 | Plus |
X | 23542271 | X | 19749131..19749312 | 16..197 | 910 | 100 | Plus |
X | 23542271 | X | 19749689..19749848 | 436..595 | 800 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-04 05:29:27 has no hits.
BO11973.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:22:15 Download gff for
BO11973.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12534-PA | 1..582 | 17..596 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 04:52:20 Download gff for
BO11973.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12534-PA | 1..582 | 17..596 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-10 07:13:58 Download gff for
BO11973.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Alr-RA | 205..793 | 8..601 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-04 06:45:58 Download gff for
BO11973.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Alr-RA | 205..793 | 8..601 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-04 06:45:58 Download gff for
BO11973.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 19749126..19749308 | 11..193 | 98 | -> | Plus |
X | 19749388..19749629 | 194..435 | 100 | -> | Plus |
X | 19749689..19749853 | 436..601 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-10 07:13:58 Download gff for
BO11973.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 19643159..19643341 | 11..193 | 98 | -> | Plus |
arm_X | 19643421..19643662 | 194..435 | 100 | -> | Plus |
arm_X | 19643722..19643886 | 436..601 | 98 | | Plus |
BO11973.3prime Sequence
293 bp (196 high quality bases) assembled on 2006-04-19
> BO11973.3prime
ATGGTCTAGAAAGCTTGCGTCCCATGAGCCGTCTAGCCAGCCGTCGCGCC
ACCTCTCGTTCACCTTGGTGCAATCGAAGAGCGGTTTGCCCAGTTTGTCG
TTCACTCGGTTGTGGAACTTGCACAGCCACTGTGCTAGCTCCTTTTGGGA
GTTCACATTGATGGGGTTGACGTCCAGGTCGGTGCGAAAGTCCTTGGCGC
TAAACTCGCATGGGTAAAGGCGCGACAGAACCTCAAAAAAGGTCTTCATG
TCTGCGCTACTCGGTGTCCGTGGGGTTGTCAGAGTAAAAGGCG
BO11973.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:34:27
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG12534-PA | 582 | CG12534-RA | 346..572 | 252..26 | 1060 | 98.6 | Minus |
CG12534-PA | 582 | CG12534-RA | 306..345 | 293..254 | 150 | 95 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 22:45:27
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Alr-RB | 1362 | CG12534-RB | 770..1043 | 293..19 | 1245 | 97.1 | Minus |
Alr-RA | 1107 | CG12534-RA | 515..788 | 293..19 | 1245 | 97.1 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 22:45:22
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 19749689..19749848 | 178..19 | 755 | 98.1 | Minus |
X | 23542271 | X | 19749516..19749629 | 293..179 | 465 | 95.7 | Minus |
Blast to na_te.dros performed on 2015-02-11 22:45:24 has no hits.
BO11973.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:22:14 Download gff for
BO11973.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12534-PA | 306..582 | 18..293 | 96 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 04:52:19 Download gff for
BO11973.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12534-PA | 306..582 | 18..293 | 96 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 07:49:05 Download gff for
BO11973.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Alr-RA | 515..793 | 13..293 | 96 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 01:16:41 Download gff for
BO11973.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Alr-RA | 515..793 | 13..293 | 96 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 01:16:41 Download gff for
BO11973.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 19749516..19749629 | 179..293 | 95 | -> | Minus |
X | 19749689..19749853 | 13..178 | 96 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 07:49:05 Download gff for
BO11973.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 19643549..19643662 | 179..293 | 95 | -> | Minus |
arm_X | 19643722..19643886 | 13..178 | 96 | | Minus |
BO11973.complete Sequence
613 bp assembled on 2006-10-11
GenBank Submission: FJ632265
> BO11973.complete
GAAGTTATCAGTCGACATGTCTGCCGAGGCGAATCCCGAGATGGATAAGG
AGCACCACGAGTCCCCATTCGCAGCGAACCGCAAGGCCGGTGCCAGCGGC
GCCGGCAAACAGGACTCGAACTGCCGCACCTGCAACGATTTCAAGTCGTG
GTCCAAGCAGCAACGCCTCATCTCCAACGTGCAGAGCGCCAAGGTGAAGC
ACATGGCCGCCGCCGAAAAGCTGACCGTCAACGCCGCCGAAGATCCGCTG
CCCCGCGACGACTGCCCGCTGGACAAGGTGAGGCTGGGAATTTCCACCTG
GGGACTGCTCCACACCATGGCCGCCTTTTACTCGGACAACCCCACGGACA
CCGAGAAGCGCGACATGAAGACCTTTTTTGAGGTTCTGTCGCGCCTTTAC
CCCTGCGAGTTTTGCGCCAAGGACTTTCGCACCGACCTGGACGTCAACCC
CATCAATGTGAACTCCCAAAAGGAGCTAGCACTGTGGCTGTGCAAGTTCC
ACAACCGAGTGAACGACAAACTGGGCAAACCGCTCTTCGATTGCACCAAG
GTGAACGAGAGGTGGCGCGACGGCTGGCTAGACGGCTCCTGCGACGCAAG
CTTTCTAGACCAT
BO11973.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 13:37:04
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Alr-RB | 801 | CG12534-PB | 219..798 | 16..595 | 2900 | 100 | Plus |
Alr-RA | 786 | CG12534-PA | 204..783 | 16..595 | 2900 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 13:37:05
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Alr-RB | 1362 | CG12534-RB | 464..1043 | 16..595 | 2900 | 100 | Plus |
Alr-RA | 1107 | CG12534-RA | 209..788 | 16..595 | 2900 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 13:37:02
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 19749386..19749629 | 192..435 | 1220 | 100 | Plus |
X | 23542271 | X | 19749131..19749312 | 16..197 | 910 | 100 | Plus |
X | 23542271 | X | 19749689..19749848 | 436..595 | 800 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 13:37:02 has no hits.
BO11973.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 13:58:28 Download gff for
BO11973.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12534-RA | 200..786 | 8..596 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 02:00:54 Download gff for
BO11973.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12534-RA | 209..797 | 8..601 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:20:11 Download gff for
BO11973.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Alr-RA | 210..788 | 17..597 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 13:58:28 Download gff for
BO11973.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12534-RA | 209..797 | 8..601 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:51:58 Download gff for
BO11973.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Alr-RA | 210..788 | 17..597 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 14:51:58 Download gff for
BO11973.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 19749689..19749848 | 436..597 | 98 | | Plus |
X | 19749132..19749308 | 17..193 | 100 | -> | Plus |
X | 19749388..19749629 | 194..435 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:20:11 Download gff for
BO11973.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 19643421..19643662 | 194..435 | 100 | -> | Plus |
arm_X | 19643722..19643881 | 436..597 | 98 | | Plus |
arm_X | 19643165..19643341 | 17..193 | 100 | -> | Plus |
BO11973.pep Sequence
Translation from 16 to 613
> BO11973.pep
MSAEANPEMDKEHHESPFAANRKAGASGAGKQDSNCRTCNDFKSWSKQQR
LISNVQSAKVKHMAAAEKLTVNAAEDPLPRDDCPLDKVRLGISTWGLLHT
MAAFYSDNPTDTEKRDMKTFFEVLSRLYPCEFCAKDFRTDLDVNPINVNS
QKELALWLCKFHNRVNDKLGKPLFDCTKVNERWRDGWLDGSCDASFLDH
BO11973.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:59:56
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Alr-PA | 261 | CG12534-PA | 69..261 | 1..193 | 1054 | 100 | Plus |
Alr-PB | 266 | CG12534-PB | 74..266 | 1..193 | 1054 | 100 | Plus |