Clone BO11973 Report

Search the DGRC for BO11973

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:119
Well:73
Vector:pDNR-Dual
Associated Gene/Transcript
Protein status:BO11973.pep: validated full length
Sequenced Size:613

Clone Sequence Records

BO11973.5prime Sequence

611 bp (610 high quality bases) assembled on 2006-04-19

> BO11973.5prime
GAAGTTATCAGTCGACATGTCTGCCGAGGCGAATCCCGAGATGGATAAGG
AGCACCACGAGTCCCCATTCGCAGCGAACCGCAAGGCCGGTGCCAGCGGC
GCCGGCAAACAGGACTCGAACTGCCGCACCTGCAACGATTTCAAGTCGTG
GTCCAAGCAGCAACGCCTCATCTCCAACGTGCAGAGCGCCAAGGTGAAGC
ACATGGCCGCCGCCGAAAAGCTGACCGTCAACGCCGCCGAAGATCCGCTG
CCCCGCGACGACTGCCCGCTGGACAAGGTGAGGCTGGGAATTTCCACCTG
GGGACTGCTCCACACCATGGCCGCCTTTTACTCGGACAACCCCACGGACA
CCGAGAAGCGCGACATGAAGACCTTTTTTGAGGTTCTGTCGCGCCTTTAC
CCCTGCGAGTTTTGCGCCAAGGACTTTCGCACCGACCTGGACGTCAACCC
CATCAATGTGAACTCCCAAAAGGAGCTAGCACTGTGGCTGTGCAAGTTCC
ACAACCGAGTGAACGACAAACTGGGCAAACCGCTCTTCGATTGCACCAAG
GTGAACGAGAGGTGGCGCGACGGCTGGCTAGACGGCTCCTGCGACGCAAG
CTTTCTAGACC

BO11973.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:34:28
Subject Length Description Subject Range Query Range Score Percent Strand
CG12534-PA 582 CG12534-RA 1..579 17..595 2895 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-04 05:29:29
Subject Length Description Subject Range Query Range Score Percent Strand
Alr-RB 1362 CG12534-RB 464..1043 16..595 2900 100 Plus
Alr-RA 1107 CG12534-RA 209..788 16..595 2900 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-04 05:29:25
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 19749386..19749629 192..435 1220 100 Plus
X 23542271 X 19749131..19749312 16..197 910 100 Plus
X 23542271 X 19749689..19749848 436..595 800 100 Plus
Blast to na_te.dros performed on 2015-02-04 05:29:27 has no hits.

BO11973.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:22:15 Download gff for BO11973.5prime
Subject Subject Range Query Range Percent Splice Strand
CG12534-PA 1..582 17..596 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 04:52:20 Download gff for BO11973.5prime
Subject Subject Range Query Range Percent Splice Strand
CG12534-PA 1..582 17..596 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-10 07:13:58 Download gff for BO11973.5prime
Subject Subject Range Query Range Percent Splice Strand
Alr-RA 205..793 8..601 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-04 06:45:58 Download gff for BO11973.5prime
Subject Subject Range Query Range Percent Splice Strand
Alr-RA 205..793 8..601 98   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-04 06:45:58 Download gff for BO11973.5prime
Subject Subject Range Query Range Percent Splice Strand
X 19749126..19749308 11..193 98 -> Plus
X 19749388..19749629 194..435 100 -> Plus
X 19749689..19749853 436..601 98   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-10 07:13:58 Download gff for BO11973.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 19643159..19643341 11..193 98 -> Plus
arm_X 19643421..19643662 194..435 100 -> Plus
arm_X 19643722..19643886 436..601 98   Plus

BO11973.3prime Sequence

293 bp (196 high quality bases) assembled on 2006-04-19

> BO11973.3prime
ATGGTCTAGAAAGCTTGCGTCCCATGAGCCGTCTAGCCAGCCGTCGCGCC
ACCTCTCGTTCACCTTGGTGCAATCGAAGAGCGGTTTGCCCAGTTTGTCG
TTCACTCGGTTGTGGAACTTGCACAGCCACTGTGCTAGCTCCTTTTGGGA
GTTCACATTGATGGGGTTGACGTCCAGGTCGGTGCGAAAGTCCTTGGCGC
TAAACTCGCATGGGTAAAGGCGCGACAGAACCTCAAAAAAGGTCTTCATG
TCTGCGCTACTCGGTGTCCGTGGGGTTGTCAGAGTAAAAGGCG

BO11973.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:34:27
Subject Length Description Subject Range Query Range Score Percent Strand
CG12534-PA 582 CG12534-RA 346..572 252..26 1060 98.6 Minus
CG12534-PA 582 CG12534-RA 306..345 293..254 150 95 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 22:45:27
Subject Length Description Subject Range Query Range Score Percent Strand
Alr-RB 1362 CG12534-RB 770..1043 293..19 1245 97.1 Minus
Alr-RA 1107 CG12534-RA 515..788 293..19 1245 97.1 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 22:45:22
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 19749689..19749848 178..19 755 98.1 Minus
X 23542271 X 19749516..19749629 293..179 465 95.7 Minus
Blast to na_te.dros performed on 2015-02-11 22:45:24 has no hits.

BO11973.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:22:14 Download gff for BO11973.3prime
Subject Subject Range Query Range Percent Splice Strand
CG12534-PA 306..582 18..293 96   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 04:52:19 Download gff for BO11973.3prime
Subject Subject Range Query Range Percent Splice Strand
CG12534-PA 306..582 18..293 96   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 07:49:05 Download gff for BO11973.3prime
Subject Subject Range Query Range Percent Splice Strand
Alr-RA 515..793 13..293 96   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 01:16:41 Download gff for BO11973.3prime
Subject Subject Range Query Range Percent Splice Strand
Alr-RA 515..793 13..293 96   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 01:16:41 Download gff for BO11973.3prime
Subject Subject Range Query Range Percent Splice Strand
X 19749516..19749629 179..293 95 -> Minus
X 19749689..19749853 13..178 96   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 07:49:05 Download gff for BO11973.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 19643549..19643662 179..293 95 -> Minus
arm_X 19643722..19643886 13..178 96   Minus

BO11973.complete Sequence

613 bp assembled on 2006-10-11

GenBank Submission: FJ632265

> BO11973.complete
GAAGTTATCAGTCGACATGTCTGCCGAGGCGAATCCCGAGATGGATAAGG
AGCACCACGAGTCCCCATTCGCAGCGAACCGCAAGGCCGGTGCCAGCGGC
GCCGGCAAACAGGACTCGAACTGCCGCACCTGCAACGATTTCAAGTCGTG
GTCCAAGCAGCAACGCCTCATCTCCAACGTGCAGAGCGCCAAGGTGAAGC
ACATGGCCGCCGCCGAAAAGCTGACCGTCAACGCCGCCGAAGATCCGCTG
CCCCGCGACGACTGCCCGCTGGACAAGGTGAGGCTGGGAATTTCCACCTG
GGGACTGCTCCACACCATGGCCGCCTTTTACTCGGACAACCCCACGGACA
CCGAGAAGCGCGACATGAAGACCTTTTTTGAGGTTCTGTCGCGCCTTTAC
CCCTGCGAGTTTTGCGCCAAGGACTTTCGCACCGACCTGGACGTCAACCC
CATCAATGTGAACTCCCAAAAGGAGCTAGCACTGTGGCTGTGCAAGTTCC
ACAACCGAGTGAACGACAAACTGGGCAAACCGCTCTTCGATTGCACCAAG
GTGAACGAGAGGTGGCGCGACGGCTGGCTAGACGGCTCCTGCGACGCAAG
CTTTCTAGACCAT

BO11973.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 13:37:04
Subject Length Description Subject Range Query Range Score Percent Strand
Alr-RB 801 CG12534-PB 219..798 16..595 2900 100 Plus
Alr-RA 786 CG12534-PA 204..783 16..595 2900 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 13:37:05
Subject Length Description Subject Range Query Range Score Percent Strand
Alr-RB 1362 CG12534-RB 464..1043 16..595 2900 100 Plus
Alr-RA 1107 CG12534-RA 209..788 16..595 2900 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 13:37:02
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 19749386..19749629 192..435 1220 100 Plus
X 23542271 X 19749131..19749312 16..197 910 100 Plus
X 23542271 X 19749689..19749848 436..595 800 100 Plus
Blast to na_te.dros performed on 2014-11-27 13:37:02 has no hits.

BO11973.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 13:58:28 Download gff for BO11973.complete
Subject Subject Range Query Range Percent Splice Strand
CG12534-RA 200..786 8..596 98   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 02:00:54 Download gff for BO11973.complete
Subject Subject Range Query Range Percent Splice Strand
CG12534-RA 209..797 8..601 98   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:20:11 Download gff for BO11973.complete
Subject Subject Range Query Range Percent Splice Strand
Alr-RA 210..788 17..597 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 13:58:28 Download gff for BO11973.complete
Subject Subject Range Query Range Percent Splice Strand
CG12534-RA 209..797 8..601 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:51:58 Download gff for BO11973.complete
Subject Subject Range Query Range Percent Splice Strand
Alr-RA 210..788 17..597 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 14:51:58 Download gff for BO11973.complete
Subject Subject Range Query Range Percent Splice Strand
X 19749689..19749848 436..597 98   Plus
X 19749132..19749308 17..193 100 -> Plus
X 19749388..19749629 194..435 100 -> Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:20:11 Download gff for BO11973.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 19643421..19643662 194..435 100 -> Plus
arm_X 19643722..19643881 436..597 98   Plus
arm_X 19643165..19643341 17..193 100 -> Plus

BO11973.pep Sequence

Translation from 16 to 613

> BO11973.pep
MSAEANPEMDKEHHESPFAANRKAGASGAGKQDSNCRTCNDFKSWSKQQR
LISNVQSAKVKHMAAAEKLTVNAAEDPLPRDDCPLDKVRLGISTWGLLHT
MAAFYSDNPTDTEKRDMKTFFEVLSRLYPCEFCAKDFRTDLDVNPINVNS
QKELALWLCKFHNRVNDKLGKPLFDCTKVNERWRDGWLDGSCDASFLDH

BO11973.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:59:56
Subject Length Description Subject Range Query Range Score Percent Strand
Alr-PA 261 CG12534-PA 69..261 1..193 1054 100 Plus
Alr-PB 266 CG12534-PB 74..266 1..193 1054 100 Plus