Clone Sequence Records
BO11974.3prime Sequence
477 bp (452 high quality bases) assembled on 2006-04-19
> BO11974.3prime
ATGGTCTAGAAAGCTTGCCTTTCTGTTCAGATTGTAGTTCCTCAGATAGA
TGCCAGCGAGAACCTCCTGGATGCGGCGACGTCGCTTGTCCTGCATCAGT
ATGGAGACCAGATGCTTGGGACTCAATCCCCTGTTGCTCTGGCGATCCAT
GGCATCGATCTCGTCCTCGCTGATCACGTCCTCCTCGCGATCATCGTCAG
CCTGGCTGATTGGTCCATCGGCCAGGGGAATCTCCGCATTTCCATCCTCG
GCCGCGTTGACCACCTCGGAATCATCCTCGAAGAGACTTCCATCGGCCAG
GTCGTCCAGGTTGAGGCCCTGCAGCAAATCGGAAATGGTGGGCACGAAGG
CGCTGCGCCGTGAGCTAGTGGAGTTGGAGCTGTTAGAGCTGGCGGGCAGG
TAGATGCCCTGCATGTTGTTGGGGTTGATGATCAGGTAGGTGGGGNCTCC
TCCTCCNGTGTTCCCGTCCTTGCCTGG
BO11974.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:34:29
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG13983-PA | 762 | CG13983-RA | 325..759 | 453..19 | 2156 | 99.7 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 20:22:38
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG13983-RA | 877 | CG13983-RA | 341..796 | 474..19 | 2198 | 98.7 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 20:22:36
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 6263638..6264093 | 19..474 | 2198 | 98.7 | Plus |
Blast to na_te.dros performed on 2015-02-10 20:22:37 has no hits.
BO11974.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:22:15 Download gff for
BO11974.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG13983-PA | 304..762 | 15..474 | 98 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 04:52:21 Download gff for
BO11974.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG13983-PA | 304..762 | 15..474 | 98 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-20 20:38:37 Download gff for
BO11974.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG13983-RA | 341..799 | 15..474 | 98 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 22:17:58 Download gff for
BO11974.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG13983-RA | 341..799 | 15..474 | 98 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 22:17:58 Download gff for
BO11974.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 6263635..6264093 | 15..474 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-20 20:38:37 Download gff for
BO11974.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 6263635..6264093 | 15..474 | 98 | | Plus |
BO11974.5prime Sequence
791 bp (790 high quality bases) assembled on 2006-04-19
> BO11974.5prime
GAAGTTATCAGTCGACATGAGAACCCTGAGCGTCTTGATTCTCCTCGCCA
CTCTGGTTGCCTTTTGTGCAGCCCAGCAGGCCTCCAACGGCAAGAACAGA
AAGGAAAATGCCTTCTCCAAGATCGTTCCTCGCCTGCTGTGGAACATCAA
GCGCGGCGACCAGGAGAGCCACCGCAACTCCCAGCAGCCCATCATCATAG
TGCAGCAGCCCAGCTCGAATCAGGAATCGGATAGACACCACCACCACAAC
CCCAACTATCCCTACTACCCGTACTACCCACCACCACCACCTCAAAACCG
TCCTCCGCCACCGTTTCCCGGCATGGACTGGAACACTGTGGGAGGAGGCC
CCACCTACCTGATCATCAACCCCAACAACATGCAGGGCATCTACCTGCCC
GCCAGCTCTAACAGCTCCAACTCCACTAGCTCACGGCGCAGCGCCTTCGT
GCCCACCATTTCCGATTTGCTGCAGGGCCTCAACCTGGACGACCTGGCCG
ATGGAAGTCTCTTCGAGGATGATTCCGAGGTGGTCAACGCGGCCGAGGAT
GGAAATGCGGAGATTCCCCTGGCCGATGGACCAATCAGCCAGGCTGACGA
TGATCGCGAGGAGGACGTGATCAGCGAGGACGAGATCGATGCCATGGATC
GCCAGAGCAACAGGGGATTGAGTCCCAAGCATCTGGTCTCCATACTGATG
CAGGACAAGCGACGTCGCCGCATCCAGGAGGTTCTCGCTGGCATCTATCT
GAGGAACTACAATCTGAACAGAAAGGCAAGCTTTCTAGACC
BO11974.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:34:29
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG13983-PA | 762 | CG13983-RA | 1..759 | 17..775 | 3795 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 13:27:56
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG13983-RA | 877 | CG13983-RA | 37..796 | 16..775 | 3800 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 13:27:53
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 6263638..6264303 | 775..110 | 3330 | 100 | Minus |
| 2L | 23513712 | 2L | 6264360..6264454 | 110..16 | 475 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-12 13:27:55 has no hits.
BO11974.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:22:16 Download gff for
BO11974.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG13983-PA | 1..762 | 17..779 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 04:52:23 Download gff for
BO11974.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG13983-PA | 1..762 | 17..779 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 06:26:59 Download gff for
BO11974.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG13983-RA | 32..799 | 9..779 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 17:26:35 Download gff for
BO11974.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG13983-RA | 32..799 | 9..779 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 17:26:35 Download gff for
BO11974.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 6263635..6264302 | 111..779 | 99 | <- | Minus |
| 2L | 6264360..6264459 | 9..110 | 96 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 06:26:59 Download gff for
BO11974.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 6264360..6264459 | 9..110 | 96 | | Minus |
| arm_2L | 6263635..6264302 | 111..779 | 99 | <- | Minus |
BO11974.complete Sequence
793 bp assembled on 2006-10-11
GenBank Submission: FJ632266
> BO11974.complete
GAAGTTATCAGTCGACATGAGAACCCTGAGCGTCTTGATTCTCCTCGCCA
CTCTGGTTGCCTTTTGTGCAGCCCAGCAGGCCTCCAACGGCAAGAACAGA
AAGGAAAATGCCTTCTCCAAGATCGTTCCTCGCCTGCTGTGGAACATCAA
GCGCGGCGACCAGGAGAGCCACCGCAACTCCCAGCAGCCCATCATCATAG
TGCAGCAGCCCAGCTCGAATCAGGAATCGGATAGACACCACCACCACAAC
CCCAACTATCCCTACTACCCGTACTACCCACCACCACCACCTCAAAACCG
TCCTCCGCCACCGTTTCCCGGCATGGACTGGAACACTGTGGGAGGAGGCC
CCACCTACCTGATCATCAACCCCAACAACATGCAGGGCATCTACCTGCCC
GCCAGCTCTAACAGCTCCAACTCCACTAGCTCACGGCGCAGCGCCTTCGT
GCCCACCATTTCCGATTTGCTGCAGGGCCTCAACCTGGACGACCTGGCCG
ATGGAAGTCTCTTCGAGGATGATTCCGAGGTGGTCAACGCGGCCGAGGAT
GGAAATGCGGAGATTCCCCTGGCCGATGGACCAATCAGCCAGGCTGACGA
TGATCGCGAGGAGGACGTGATCAGCGAGGACGAGATCGATGCCATGGATC
GCCAGAGCAACAGGGGATTGAGTCCCAAGCATCTGGTCTCCATACTGATG
CAGGACAAGCGACGTCGCCGCATCCAGGAGGTTCTCGCTGGCATCTATCT
GAGGAACTACAATCTGAACAGAAAGGCAAGCTTTCTAGACCAT
BO11974.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 13:59:54
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG13983-RA | 762 | CG13983-PA | 1..759 | 17..775 | 3795 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 13:59:55
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG13983-RA | 877 | CG13983-RA | 37..796 | 16..775 | 3800 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 13:59:52
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 6263638..6264303 | 775..110 | 3330 | 100 | Minus |
| 2L | 23513712 | 2L | 6264360..6264454 | 110..16 | 475 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 13:59:53 has no hits.
BO11974.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 13:58:33 Download gff for
BO11974.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG13983-RA | 1..762 | 17..779 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:10:12 Download gff for
BO11974.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG13983-RA | 29..796 | 9..779 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:30:51 Download gff for
BO11974.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG13983-RA | 38..796 | 17..777 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 13:58:34 Download gff for
BO11974.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG13983-RA | 29..796 | 9..779 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:01:03 Download gff for
BO11974.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG13983-RA | 38..796 | 17..777 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 15:01:03 Download gff for
BO11974.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 6263636..6264302 | 111..777 | 99 | <- | Minus |
| 2L | 6264360..6264453 | 17..110 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:30:51 Download gff for
BO11974.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 6263636..6264302 | 111..777 | 99 | <- | Minus |
| arm_2L | 6264360..6264453 | 17..110 | 100 | | Minus |
BO11974.pep Sequence
Translation from 16 to 793
> BO11974.pep
MRTLSVLILLATLVAFCAAQQASNGKNRKENAFSKIVPRLLWNIKRGDQE
SHRNSQQPIIIVQQPSSNQESDRHHHHNPNYPYYPYYPPPPPQNRPPPPF
PGMDWNTVGGGPTYLIINPNNMQGIYLPASSNSSNSTSSRRSAFVPTISD
LLQGLNLDDLADGSLFEDDSEVVNAAEDGNAEIPLADGPISQADDDREED
VISEDEIDAMDRQSNRGLSPKHLVSILMQDKRRRRIQEVLAGIYLRNYNL
NRKASFLDH
BO11974.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:59:40
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG13983-PA | 253 | CG13983-PA | 1..253 | 1..253 | 1332 | 100 | Plus |
