Clone Sequence Records
BO11977.3prime Sequence
620 bp (619 high quality bases) assembled on 2006-04-19
> BO11977.3prime
ATGGTCTAGAAAGCTTGCCCAGCCCAGCCACGGCGGATGATTAATCTTAG
ATGGCGGGGTAAAGGTGAGGTTGACCGGTATGTTGATCAGGGCGTGCACC
CTCTTCAGCCGCTGCAGCGTCGACCGGATGATGACGCCATTCTTCCCGAG
AAGAAAGCCGGCCGGTATGTTGGCGTCCTGTTGGGAGTTGTCATGTATCA
TCTCGATGTAGTGCTCAAACTCTGGAGAGCTGGGATTGTACTCAGTGATG
ATTGCAGCCAATGCGCCAGCTGCCTCCGCTCGAAGTGTCTTCGTGAGGAA
GGAACACTCCCCTCGATCAATGAGTGCGACGCCCCCATTCAGATCTCTGG
CGTTCCGGATCTCCTGGCAGGCGCCGGGGGGATCTGTAATCACTAGCGGC
ACACCCTCCAGTCGCTCCGAGAAGGCGGATCCAAAGTCCTTGGCCGGGCG
CAGCCGGTACGTGTATTCCAGTTCCGAGGGGGACAGGATTTCAAAAAACA
CGTCACCCGCTATTATGTCCTGCGTTGTGATCGGTATCGATATCGTGGTG
CTGGCTCTGATGGATCGGCTCAAAGTGGCGGCAAGCACTAACCAGGCGAT
TAGCATGTCGACTGATAACT
BO11977.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:34:32
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9849-PA | 591 | CG9849-RA | 1..588 | 606..19 | 2940 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-09 03:52:04
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9849-RB | 920 | CG9849-RB | 89..676 | 606..19 | 2940 | 100 | Minus |
CG9849-RA | 986 | CG9849-RA | 155..742 | 606..19 | 2940 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-09 03:51:56
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 22937864..22938160 | 606..310 | 1485 | 100 | Minus |
2R | 25286936 | 2R | 22938489..22938781 | 311..19 | 1465 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-09 03:52:00 has no hits.
BO11977.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:22:21 Download gff for
BO11977.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9849-PA | 1..591 | 16..606 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 04:52:30 Download gff for
BO11977.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9849-PA | 1..591 | 16..606 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-12 07:59:00 Download gff for
BO11977.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9849-RA | 155..742 | 19..606 | 100 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-09 05:29:30 Download gff for
BO11977.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9849-RA | 155..742 | 19..606 | 100 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-09 05:29:30 Download gff for
BO11977.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 22937864..22938159 | 311..606 | 100 | -> | Minus |
2R | 22938490..22938781 | 19..310 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-12 07:59:00 Download gff for
BO11977.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 18825387..18825682 | 311..606 | 100 | -> | Minus |
arm_2R | 18826013..18826304 | 19..310 | 100 | | Minus |
BO11977.5prime Sequence
620 bp (619 high quality bases) assembled on 2006-04-19
> BO11977.5prime
GAAGTTATCAGTCGACATGCTAATCGCCTGGTTAGTGCTTGCCGCCACTT
TGAGCCGATCCATCAGAGCCAGCACCACGATATCGATACCGATCACAACG
CAGGACATAATAGCGGGTGACGTGTTTTTTGAAATCCTGTCCCCCTCGGA
ACTGGAATACACGTACCGGCTGCGCCCGGCCAAGGACTTTGGATCCGCCT
TCTCGGAGCGACTGGAGGGTGTGCCGCTAGTGATTACAGATCCCCCCGGC
GCCTGCCAGGAGATCCGGAACGCCAGAGATCTGAATGGGGGCGTCGCACT
CATTGATCGAGGGGAGTGTTCCTTCCTCACGAAGACACTTCGAGCGGAGG
CAGCTGGCGCATTGGCTGCAATCATCACTGAGTACAATCCCAGCTCTCCA
GAGTTTGAGCACTACATCGAGATGATACATGACAACTCCCAACAGGACGC
CAACATACCGGCCGGCTTTCTTCTCGGGAAGAATGGCGTCATCATCCGGT
CGACGCTGCAGCGGCTGAAGAGGGTGCACGCCCTGATCAACATACCGGTC
AACCTCACCTTTACCCCGCCATCTAAGATTAATCATCCGCCGTGGCTGGG
CTGGGCAAGCTTTCTAGACC
BO11977.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:34:33
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9849-PA | 591 | CG9849-RA | 1..588 | 17..604 | 2940 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 05:17:48
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9849-RB | 920 | CG9849-RB | 89..676 | 17..604 | 2940 | 100 | Plus |
CG9849-RA | 986 | CG9849-RA | 155..742 | 17..604 | 2940 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 05:17:41
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 22937864..22938160 | 17..313 | 1485 | 100 | Plus |
2R | 25286936 | 2R | 22938489..22938781 | 312..604 | 1465 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-12 05:17:44 has no hits.
BO11977.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:22:22 Download gff for
BO11977.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9849-PA | 1..591 | 17..607 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 04:52:31 Download gff for
BO11977.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9849-PA | 1..591 | 17..607 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 03:57:42 Download gff for
BO11977.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9849-RA | 155..742 | 17..604 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 07:26:50 Download gff for
BO11977.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9849-RA | 155..742 | 17..604 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 07:26:50 Download gff for
BO11977.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 22937864..22938159 | 17..312 | 100 | -> | Plus |
2R | 22938490..22938781 | 313..604 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 03:57:42 Download gff for
BO11977.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 18825387..18825682 | 17..312 | 100 | -> | Plus |
arm_2R | 18826013..18826304 | 313..604 | 100 | | Plus |
BO11977.complete Sequence
622 bp assembled on 2006-10-11
GenBank Submission: FJ632267
> BO11977.complete
GAAGTTATCAGTCGACATGCTAATCGCCTGGTTAGTGCTTGCCGCCACTT
TGAGCCGATCCATCAGAGCCAGCACCACGATATCGATACCGATCACAACG
CAGGACATAATAGCGGGTGACGTGTTTTTTGAAATCCTGTCCCCCTCGGA
ACTGGAATACACGTACCGGCTGCGCCCGGCCAAGGACTTTGGATCCGCCT
TCTCGGAGCGACTGGAGGGTGTGCCGCTAGTGATTACAGATCCCCCCGGC
GCCTGCCAGGAGATCCGGAACGCCAGAGATCTGAATGGGGGCGTCGCACT
CATTGATCGAGGGGAGTGTTCCTTCCTCACGAAGACACTTCGAGCGGAGG
CAGCTGGCGCATTGGCTGCAATCATCACTGAGTACAATCCCAGCTCTCCA
GAGTTTGAGCACTACATCGAGATGATACATGACAACTCCCAACAGGACGC
CAACATACCGGCCGGCTTTCTTCTCGGGAAGAATGGCGTCATCATCCGGT
CGACGCTGCAGCGGCTGAAGAGGGTGCACGCCCTGATCAACATACCGGTC
AACCTCACCTTTACCCCGCCATCTAAGATTAATCATCCGCCGTGGCTGGG
CTGGGCAAGCTTTCTAGACCAT
BO11977.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 22:32:41
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9849-RB | 591 | CG9849-PB | 1..588 | 17..604 | 2940 | 100 | Plus |
CG9849-RA | 591 | CG9849-PA | 1..588 | 17..604 | 2940 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 22:32:41
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9849-RB | 920 | CG9849-RB | 89..676 | 17..604 | 2940 | 100 | Plus |
CG9849-RA | 986 | CG9849-RA | 155..742 | 17..604 | 2940 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 22:32:39
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 22937864..22938160 | 17..313 | 1485 | 100 | Plus |
2R | 25286936 | 2R | 22938489..22938781 | 312..604 | 1465 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-26 22:32:40 has no hits.
BO11977.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 13:40:41 Download gff for
BO11977.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9849-RA | 1..591 | 17..607 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 02:00:34 Download gff for
BO11977.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9849-RA | 155..742 | 17..604 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 04:01:34 Download gff for
BO11977.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9849-RA | 155..742 | 17..606 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 13:40:43 Download gff for
BO11977.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9849-RA | 155..742 | 17..604 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 23:03:59 Download gff for
BO11977.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9849-RA | 155..742 | 17..606 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 23:03:59 Download gff for
BO11977.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 22937864..22938159 | 17..312 | 100 | -> | Plus |
2R | 22938490..22938781 | 313..606 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 04:01:34 Download gff for
BO11977.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 18825387..18825682 | 17..312 | 100 | -> | Plus |
arm_2R | 18826013..18826304 | 313..606 | 99 | | Plus |
BO11977.pep Sequence
Translation from 16 to 622
> BO11977.pep
MLIAWLVLAATLSRSIRASTTISIPITTQDIIAGDVFFEILSPSELEYTY
RLRPAKDFGSAFSERLEGVPLVITDPPGACQEIRNARDLNGGVALIDRGE
CSFLTKTLRAEAAGALAAIITEYNPSSPEFEHYIEMIHDNSQQDANIPAG
FLLGKNGVIIRSTLQRLKRVHALINIPVNLTFTPPSKINHPPWLGWASFL
DH
BO11977.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:51:57
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9849-PB | 196 | CG9849-PB | 1..196 | 1..196 | 1008 | 100 | Plus |
CG9849-PA | 196 | CG9849-PA | 1..196 | 1..196 | 1008 | 100 | Plus |