Clone BO11977 Report

Search the DGRC for BO11977

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:119
Well:77
Vector:pDNR-Dual
Associated Gene/TranscriptCG9849-RA
Protein status:BO11977.pep: validated full length
Sequenced Size:622

Clone Sequence Records

BO11977.3prime Sequence

620 bp (619 high quality bases) assembled on 2006-04-19

> BO11977.3prime
ATGGTCTAGAAAGCTTGCCCAGCCCAGCCACGGCGGATGATTAATCTTAG
ATGGCGGGGTAAAGGTGAGGTTGACCGGTATGTTGATCAGGGCGTGCACC
CTCTTCAGCCGCTGCAGCGTCGACCGGATGATGACGCCATTCTTCCCGAG
AAGAAAGCCGGCCGGTATGTTGGCGTCCTGTTGGGAGTTGTCATGTATCA
TCTCGATGTAGTGCTCAAACTCTGGAGAGCTGGGATTGTACTCAGTGATG
ATTGCAGCCAATGCGCCAGCTGCCTCCGCTCGAAGTGTCTTCGTGAGGAA
GGAACACTCCCCTCGATCAATGAGTGCGACGCCCCCATTCAGATCTCTGG
CGTTCCGGATCTCCTGGCAGGCGCCGGGGGGATCTGTAATCACTAGCGGC
ACACCCTCCAGTCGCTCCGAGAAGGCGGATCCAAAGTCCTTGGCCGGGCG
CAGCCGGTACGTGTATTCCAGTTCCGAGGGGGACAGGATTTCAAAAAACA
CGTCACCCGCTATTATGTCCTGCGTTGTGATCGGTATCGATATCGTGGTG
CTGGCTCTGATGGATCGGCTCAAAGTGGCGGCAAGCACTAACCAGGCGAT
TAGCATGTCGACTGATAACT

BO11977.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:34:32
Subject Length Description Subject Range Query Range Score Percent Strand
CG9849-PA 591 CG9849-RA 1..588 606..19 2940 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-09 03:52:04
Subject Length Description Subject Range Query Range Score Percent Strand
CG9849-RB 920 CG9849-RB 89..676 606..19 2940 100 Minus
CG9849-RA 986 CG9849-RA 155..742 606..19 2940 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-09 03:51:56
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 22937864..22938160 606..310 1485 100 Minus
2R 25286936 2R 22938489..22938781 311..19 1465 100 Minus
Blast to na_te.dros performed on 2015-02-09 03:52:00 has no hits.

BO11977.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:22:21 Download gff for BO11977.3prime
Subject Subject Range Query Range Percent Splice Strand
CG9849-PA 1..591 16..606 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 04:52:30 Download gff for BO11977.3prime
Subject Subject Range Query Range Percent Splice Strand
CG9849-PA 1..591 16..606 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-12 07:59:00 Download gff for BO11977.3prime
Subject Subject Range Query Range Percent Splice Strand
CG9849-RA 155..742 19..606 100   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-09 05:29:30 Download gff for BO11977.3prime
Subject Subject Range Query Range Percent Splice Strand
CG9849-RA 155..742 19..606 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-09 05:29:30 Download gff for BO11977.3prime
Subject Subject Range Query Range Percent Splice Strand
2R 22937864..22938159 311..606 100 -> Minus
2R 22938490..22938781 19..310 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-12 07:59:00 Download gff for BO11977.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 18825387..18825682 311..606 100 -> Minus
arm_2R 18826013..18826304 19..310 100   Minus

BO11977.5prime Sequence

620 bp (619 high quality bases) assembled on 2006-04-19

> BO11977.5prime
GAAGTTATCAGTCGACATGCTAATCGCCTGGTTAGTGCTTGCCGCCACTT
TGAGCCGATCCATCAGAGCCAGCACCACGATATCGATACCGATCACAACG
CAGGACATAATAGCGGGTGACGTGTTTTTTGAAATCCTGTCCCCCTCGGA
ACTGGAATACACGTACCGGCTGCGCCCGGCCAAGGACTTTGGATCCGCCT
TCTCGGAGCGACTGGAGGGTGTGCCGCTAGTGATTACAGATCCCCCCGGC
GCCTGCCAGGAGATCCGGAACGCCAGAGATCTGAATGGGGGCGTCGCACT
CATTGATCGAGGGGAGTGTTCCTTCCTCACGAAGACACTTCGAGCGGAGG
CAGCTGGCGCATTGGCTGCAATCATCACTGAGTACAATCCCAGCTCTCCA
GAGTTTGAGCACTACATCGAGATGATACATGACAACTCCCAACAGGACGC
CAACATACCGGCCGGCTTTCTTCTCGGGAAGAATGGCGTCATCATCCGGT
CGACGCTGCAGCGGCTGAAGAGGGTGCACGCCCTGATCAACATACCGGTC
AACCTCACCTTTACCCCGCCATCTAAGATTAATCATCCGCCGTGGCTGGG
CTGGGCAAGCTTTCTAGACC

BO11977.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:34:33
Subject Length Description Subject Range Query Range Score Percent Strand
CG9849-PA 591 CG9849-RA 1..588 17..604 2940 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 05:17:48
Subject Length Description Subject Range Query Range Score Percent Strand
CG9849-RB 920 CG9849-RB 89..676 17..604 2940 100 Plus
CG9849-RA 986 CG9849-RA 155..742 17..604 2940 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 05:17:41
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 22937864..22938160 17..313 1485 100 Plus
2R 25286936 2R 22938489..22938781 312..604 1465 100 Plus
Blast to na_te.dros performed on 2015-02-12 05:17:44 has no hits.

BO11977.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:22:22 Download gff for BO11977.5prime
Subject Subject Range Query Range Percent Splice Strand
CG9849-PA 1..591 17..607 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 04:52:31 Download gff for BO11977.5prime
Subject Subject Range Query Range Percent Splice Strand
CG9849-PA 1..591 17..607 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 03:57:42 Download gff for BO11977.5prime
Subject Subject Range Query Range Percent Splice Strand
CG9849-RA 155..742 17..604 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 07:26:50 Download gff for BO11977.5prime
Subject Subject Range Query Range Percent Splice Strand
CG9849-RA 155..742 17..604 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 07:26:50 Download gff for BO11977.5prime
Subject Subject Range Query Range Percent Splice Strand
2R 22937864..22938159 17..312 100 -> Plus
2R 22938490..22938781 313..604 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 03:57:42 Download gff for BO11977.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 18825387..18825682 17..312 100 -> Plus
arm_2R 18826013..18826304 313..604 100   Plus

BO11977.complete Sequence

622 bp assembled on 2006-10-11

GenBank Submission: FJ632267

> BO11977.complete
GAAGTTATCAGTCGACATGCTAATCGCCTGGTTAGTGCTTGCCGCCACTT
TGAGCCGATCCATCAGAGCCAGCACCACGATATCGATACCGATCACAACG
CAGGACATAATAGCGGGTGACGTGTTTTTTGAAATCCTGTCCCCCTCGGA
ACTGGAATACACGTACCGGCTGCGCCCGGCCAAGGACTTTGGATCCGCCT
TCTCGGAGCGACTGGAGGGTGTGCCGCTAGTGATTACAGATCCCCCCGGC
GCCTGCCAGGAGATCCGGAACGCCAGAGATCTGAATGGGGGCGTCGCACT
CATTGATCGAGGGGAGTGTTCCTTCCTCACGAAGACACTTCGAGCGGAGG
CAGCTGGCGCATTGGCTGCAATCATCACTGAGTACAATCCCAGCTCTCCA
GAGTTTGAGCACTACATCGAGATGATACATGACAACTCCCAACAGGACGC
CAACATACCGGCCGGCTTTCTTCTCGGGAAGAATGGCGTCATCATCCGGT
CGACGCTGCAGCGGCTGAAGAGGGTGCACGCCCTGATCAACATACCGGTC
AACCTCACCTTTACCCCGCCATCTAAGATTAATCATCCGCCGTGGCTGGG
CTGGGCAAGCTTTCTAGACCAT

BO11977.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 22:32:41
Subject Length Description Subject Range Query Range Score Percent Strand
CG9849-RB 591 CG9849-PB 1..588 17..604 2940 100 Plus
CG9849-RA 591 CG9849-PA 1..588 17..604 2940 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 22:32:41
Subject Length Description Subject Range Query Range Score Percent Strand
CG9849-RB 920 CG9849-RB 89..676 17..604 2940 100 Plus
CG9849-RA 986 CG9849-RA 155..742 17..604 2940 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 22:32:39
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 22937864..22938160 17..313 1485 100 Plus
2R 25286936 2R 22938489..22938781 312..604 1465 100 Plus
Blast to na_te.dros performed on 2014-11-26 22:32:40 has no hits.

BO11977.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 13:40:41 Download gff for BO11977.complete
Subject Subject Range Query Range Percent Splice Strand
CG9849-RA 1..591 17..607 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 02:00:34 Download gff for BO11977.complete
Subject Subject Range Query Range Percent Splice Strand
CG9849-RA 155..742 17..604 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 04:01:34 Download gff for BO11977.complete
Subject Subject Range Query Range Percent Splice Strand
CG9849-RA 155..742 17..606 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 13:40:43 Download gff for BO11977.complete
Subject Subject Range Query Range Percent Splice Strand
CG9849-RA 155..742 17..604 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 23:03:59 Download gff for BO11977.complete
Subject Subject Range Query Range Percent Splice Strand
CG9849-RA 155..742 17..606 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 23:03:59 Download gff for BO11977.complete
Subject Subject Range Query Range Percent Splice Strand
2R 22937864..22938159 17..312 100 -> Plus
2R 22938490..22938781 313..606 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 04:01:34 Download gff for BO11977.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 18825387..18825682 17..312 100 -> Plus
arm_2R 18826013..18826304 313..606 99   Plus

BO11977.pep Sequence

Translation from 16 to 622

> BO11977.pep
MLIAWLVLAATLSRSIRASTTISIPITTQDIIAGDVFFEILSPSELEYTY
RLRPAKDFGSAFSERLEGVPLVITDPPGACQEIRNARDLNGGVALIDRGE
CSFLTKTLRAEAAGALAAIITEYNPSSPEFEHYIEMIHDNSQQDANIPAG
FLLGKNGVIIRSTLQRLKRVHALINIPVNLTFTPPSKINHPPWLGWASFL
DH

BO11977.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:51:57
Subject Length Description Subject Range Query Range Score Percent Strand
CG9849-PB 196 CG9849-PB 1..196 1..196 1008 100 Plus
CG9849-PA 196 CG9849-PA 1..196 1..196 1008 100 Plus