Clone Sequence Records
BO11978.5prime Sequence
905 bp (739 high quality bases) assembled on 2006-04-19
> BO11978.5prime
GAAGTTATCAGTCGGACATGGACAGGAGTCGGAGTAGCAGAGCTGCCAGC
AGCAACCAGTTCATCAGGCCATGTGGCCTACTGACGACCGTCATCCTGCT
GCAGACGCTTGTGTCGATGAGTTTGGCCATCGAGGAGATGTCGCCACCAC
CGGCCGCCCCGCCACGTCCATCGCCGCCGCCCACCGTGAAGCTCAACAAG
TGCTGCCATTCGGGCGAGTATCTGAACGATGGCACCTGCATCGCCGGCAG
CGAAGCCCTGTGGCTGCCCATGGTGTACTTGGTGCAGCAGCAGCGCTTCT
TCGAGCCCCATGGCGCCAGTCCGCGATTCTTGAAGTTCCTGCCCAATACG
AGACCCACGTGCCGAAAGGACCAGACGACGGAGATCTTTCGCAGCCGCGG
AGCCAATGTGATGCTCTTTCCCAATGGCACGCTCTATGTGCGGGAACGCG
CTCTAATGGTCCAGCCGTCGGATTACTGTGTCGACTGGGAGGTGGCCGTC
GTTTGCTTGAACGACAGTCAGCCGATCAATGCTCTGGAGGATCCCGATTA
TGCAGCCAATCCTCTCGTGCAGCAGGAGCCGCCCAAGGCTAGCCTGCGAC
TGAGCAAGTGCTGCGGCAAGTGGGGCAGCTATAACACGCAGCTCCAGAAC
TGCGATCTGCAGCCCAACCATCAGGCAGCCGTCGATGGACTGCTGCGATT
GTCGCCGCAGCTACCGGAGGGCAGCTATCAGACTAGCTACGGCCTGCCCG
ACTGTGGCCAACCCGGTGGCTACTCCATTGCCGGTGATTGGCAGGATGCC
AAGCTGGATCGGAACACGGCCATGCTCCAGTTGCCGCACAAGAAACTCAG
CGCCGGACAATACTGCCTGGAGCACACGCAGCGCGAGGGGCGAGGTGAAG
ATCAT
BO11978.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:34:34
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG4521-PA | 2031 | mthl1-RA | 1..872 | 18..889 | 4335 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 07:05:55
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| mthl1-RB | 5083 | CG4521-RB | 510..1396 | 18..905 | 4400 | 99.8 | Plus |
| mthl1-RA | 4471 | CG4521-RA | 510..1396 | 18..905 | 4400 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 07:05:47
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 16641477..16642363 | 18..905 | 4375 | 99.8 | Plus |
Blast to na_te.dros performed on 2015-02-10 07:05:51 has no hits.
BO11978.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:22:23 Download gff for
BO11978.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| mthl1-PA | 1..887 | 18..905 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 04:52:32 Download gff for
BO11978.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4521-PA | 1..887 | 18..905 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-13 09:28:44 Download gff for
BO11978.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| mthl1-RA | 502..1396 | 10..905 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 10:46:36 Download gff for
BO11978.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| mthl1-RA | 502..1396 | 10..905 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 10:46:36 Download gff for
BO11978.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 16641469..16642363 | 10..905 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-13 09:28:44 Download gff for
BO11978.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 16535502..16536396 | 10..905 | 99 | | Plus |
BO11978.complete Sequence
2063 bp assembled on 2008-08-14
GenBank Submission: KX795757
> BO11978.complete
GAAGTTATCAGTCGGACATGGACAGGAGTCGGAGTAGCAGAGCTGCCAGC
AGCAACCAGTTCATCAGGCCATGTGGCCTACTGACGACCGTCATCCTGCT
GCAGACGCTTGTGTCGATGAGTTTGGCCATCGAGGAGATGTCGCCACCAC
CGGCCGCCCCGCCACGTCCATCGCCGCCGCCCACCGTGAAGCTCAACAAG
TGCTGCCATTCGGGCGAGTATCTGAACGATGGCACCTGCATCGCCGGCAG
CGAAGCCCTGTGGCTGCCCATGGTGTACTTGGTGCAGCAGCAGCGCTTCT
TCGAGCCCCATGGCGCCAGTCCGCGATTCTTGAAGTTCCTGCCCAATACG
AGACCCACGTGCCGAAAGGACCAGACGACGGAGATCTTTCGCAGCCGCGG
AGCCAATGTGATGCTCTTTCCCAATGGCACGCTCTATGTGCGGGAACGCG
CTCTAATGGTCCAGCCGTCGGATTACTGTGTCGACTGGGAGGTGGCCGTC
GTTTGCTTGAACGACAGTCAGCCGATCAATGCTCTGGAGGATCCCGATTA
TGCAGCCAATCCTCTCGTGCAGCAGGAGCCGCCCAAGGCTAGCCTGCGAC
TGAGCAAGTGCTGCGGCAAGTGGGGCAGCTATAACACGCAGCTCCAGAAC
TGCGATCTGCAGCCCAACCATCAGGCAGCCGTCGATGGACTGCTGCGATT
GTCGCCGCAGCTACCGGAGGGCAGCTATCAGACTAGCTACGGCCTGCCCG
ACTGTGGCCAACCCGGTGGCTACTCCATTGCCGGTGATTGGCAGGATGCC
AAGCTGGATCGGAACACGGCCATGCTCCAGTTGCCGCACAAGAACCTCAG
CGCCGGACAATACTGCCTGGAGCACACGCAGCGCGAGGGCGAGGTGAAGA
TCATAGCCTGCCAGCATTTGTTTAGCTCCGCGGCAGGAGCCGGCATCCAC
GACGGCTCCATTGGAGGCACCATCGAGCAGGCCAATGGCCAGAATCTGCA
GAAGGCCGTCCTGACTGGTGGCATACTTGTGTCCATTGTCTTCCTGTCCG
CCACTTTGGTGGCCGGCTTCCTGCTGCCCGCTGTGCATCATGCGCTTCAT
TGGCGCTGCCAAATCTGCTATGTCACCTGCTTGCTATTCGGCAAAATACT
GCTGGCCATCGAGGAGCTGAGCTCCAGCCTGCAGCCGGGCAGTGCCGCCT
GCCATACGCTTGCTATCACCATGCAGTTCTTCTTTCTGGCCGCCTTCTTT
TGGCTGAACACCATGTGCTTCAACATCTGGTGGACGTTCCGGGACTTTCG
GCCCAGTTCGTTGGAACGCAATCAGGAGGCACTGCGTCGCTATCTGTACT
CCCTGTACGCTTGGGGCGGTCCTCTGCTTATCACCTTCGTGGCCGCCTGC
GTGGACCAGCTGCCGGAGACGACGCTACTGCGTCCGGGATTCGGACAGCT
CTACTGCTGGTTCGACAATCGCAATCTCTCGATCTTCGCCTACTTCTACG
GACCCATTGGCCTGCTGCTGTGCGCCAATATAGCGCTCTTCGTGTCCACC
ACCCATCAGTTGACGTGCGGCCTGTGGAAACGGGACGATGTCAAGTCCTC
ATCGGAGAAGTCCGCCCTGGGACGCGTCTGCCTGAAGCTAGTCGTCGTTA
TGGGTGTCACCTGGATAGCGGACATTCTGTCCTGGCTAGTGGGTGGACCG
CATGGCGTATGGTTCTTCACCGACCTGATCAACGCCCTGCAAGGCGTCTT
CATCTTCATCGTGGTGGGCTGCCAGCCGCAGGTGTGGACCGCCTGCCGCA
GGATCTTCTGTCCGCGATTGCGTCATGACATCACCAATACGACCAACGGT
GTCCAGCATTCGAGCAGCTCGCAGGGTTTGCCCTCGATGGCCGGCGGCAC
GGAGATTACACAGAACACCACCACCACCACCACGACAACCAACACGACCG
CCACTCACATGCCCAGCAATCCGGCGGAGGATGAGGTACCGGAGAAGGCT
CCCATTGCCCCCGTCGCACCCATCGTCAAAATGGAGACCATTTGCGCAAG
CTTTCTAGACCAT
BO11978.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 13:38:38
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| mthl1-RB | 2031 | CG4521-PB | 1..2028 | 18..2045 | 10140 | 100 | Plus |
| mthl1-RA | 2031 | CG4521-PA | 1..2028 | 18..2045 | 10140 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 13:38:39
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| mthl1-RB | 5083 | CG4521-RB | 510..2537 | 18..2045 | 10140 | 100 | Plus |
| mthl1-RA | 4471 | CG4521-RA | 510..2537 | 18..2045 | 10140 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 13:38:36
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 16641477..16643504 | 18..2045 | 10140 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 13:38:37 has no hits.
BO11978.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-07-28 15:28:28 Download gff for
BO11978.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| mthl1-RA | 571..2600 | 17..2047 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 13:11:31 Download gff for
BO11978.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| mthl1-RA | 508..2537 | 17..2047 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-03 17:28:59 Download gff for
BO11978.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| mthl1-RA | 565..2603 | 10..2049 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:23:12 Download gff for
BO11978.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| mthl1-RA | 508..2537 | 17..2047 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 14:23:12 Download gff for
BO11978.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 16641475..16643504 | 17..2047 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 13:11:31 Download gff for
BO11978.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 16535508..16537537 | 17..2047 | 99 | | Plus |
BO11978.pep Sequence
Translation from 17 to 2063
> BO11978.pep
MDRSRSSRAASSNQFIRPCGLLTTVILLQTLVSMSLAIEEMSPPPAAPPR
PSPPPTVKLNKCCHSGEYLNDGTCIAGSEALWLPMVYLVQQQRFFEPHGA
SPRFLKFLPNTRPTCRKDQTTEIFRSRGANVMLFPNGTLYVRERALMVQP
SDYCVDWEVAVVCLNDSQPINALEDPDYAANPLVQQEPPKASLRLSKCCG
KWGSYNTQLQNCDLQPNHQAAVDGLLRLSPQLPEGSYQTSYGLPDCGQPG
GYSIAGDWQDAKLDRNTAMLQLPHKNLSAGQYCLEHTQREGEVKIIACQH
LFSSAAGAGIHDGSIGGTIEQANGQNLQKAVLTGGILVSIVFLSATLVAG
FLLPAVHHALHWRCQICYVTCLLFGKILLAIEELSSSLQPGSAACHTLAI
TMQFFFLAAFFWLNTMCFNIWWTFRDFRPSSLERNQEALRRYLYSLYAWG
GPLLITFVAACVDQLPETTLLRPGFGQLYCWFDNRNLSIFAYFYGPIGLL
LCANIALFVSTTHQLTCGLWKRDDVKSSSEKSALGRVCLKLVVVMGVTWI
ADILSWLVGGPHGVWFFTDLINALQGVFIFIVVGCQPQVWTACRRIFCPR
LRHDITNTTNGVQHSSSSQGLPSMAGGTEITQNTTTTTTTTNTTATHMPS
NPAEDEVPEKAPIAPVAPIVKMETICASFLDH
BO11978.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 00:49:34
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| mthl1-PB | 676 | CG4521-PB | 1..676 | 1..676 | 3626 | 100 | Plus |
| mthl1-PA | 676 | CG4521-PA | 1..676 | 1..676 | 3626 | 100 | Plus |
| mthl10-PG | 575 | CG17061-PG | 189..546 | 257..645 | 353 | 26.5 | Plus |
| mthl10-PF | 575 | CG17061-PF | 189..546 | 257..645 | 353 | 26.5 | Plus |
| mthl10-PE | 575 | CG17061-PE | 189..546 | 257..645 | 353 | 26.5 | Plus |
