Clone Sequence Records
BO11984.3prime Sequence
812 bp (811 high quality bases) assembled on 2006-04-19
> BO11984.3prime
ATGGTCTAGAAAGCTTGCTTTCACATCCGAGTTATTCTTAATCCATTCGT
TGTGGTAGTACACCCTGGCATATCCATCTGGATAGCTCGTTCCACAGGCG
GACCACACGAACCCGGCCACGCCCACCACTTGGTTGTTATATACGGCCGG
ACCACCGGAGTCCCCATTGCACGCTCCATTATCGGCCTCGTGGATGAGGC
ACAACTCGCTCTGGACTCCCCAGCCGATCAGTTCGTCGCACCTCTCCAAG
GAAATGGACTTCAGGGTGTTGTACTGCAGATAGCGTGGCAAGTCTCCCTG
GTGTTTGATCCTTCCCCAGCCGGAAATGATGACGTCCACATCCGCTGGAG
TATCCGCAGTGGGTAGATCGATGGGCTGAATACTCGCGGACAGGATCAGT
GGGCTCTCTAGTCGCAGCAGAGCAACGTCGTTAAGGAAGTTACCATACTC
CTCGTGGACAATTACCTCGGCCACCTGGACAAGGACTCCACCGCTGAATC
GATCGTTGGAGCCCGCTCGAATGGTGAAACGCTCCGCAGCAATTGGAACG
GAATTGCCATTTGAGTCCTGATTGGTTACACAATGGGCAGCGGTTAAGAC
GTAGTTCCTGGACAGAATCGAACCTCCACAGCTGTGGGAGCCGGCGTTCC
TCAGGGACACCTGGTGGGGAAACTGATTTTTCACGGCATCCTCACCGCCC
ACCACTCGACCGTTGAGGCTACCAGGTGCCGAATGTACGGGCACTGCCAA
CAGCAGCAAAAAGCTACCGAGCAAAATCGCTGCCTTAACGGATCTCATGT
CGACTGATAACT
BO11984.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:34:40
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG1304-PA | 783 | CG1304-RA | 1..780 | 798..19 | 3900 | 100 | Minus |
| CG2071-PA | 780 | Ser6-RA | 253..542 | 546..257 | 1150 | 95.8 | Minus |
| CG2071-PA | 780 | Ser6-RA | 85..221 | 714..578 | 460 | 93.4 | Minus |
| CG2071-PA | 780 | Ser6-RA | 628..692 | 171..107 | 200 | 92.3 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-09 03:52:18
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG1304-RA | 893 | CG1304-RA | 17..796 | 798..19 | 3900 | 100 | Minus |
| Ser6-RA | 901 | CG2071-RA | 36..755 | 781..62 | 2165 | 87.2 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-09 03:52:09
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 20964624..20965403 | 19..798 | 3900 | 100 | Plus |
| X | 23542271 | X | 20962751..20963470 | 62..781 | 2100 | 86.7 | Plus |
Blast to na_te.dros performed on 2015-02-09 03:52:14 has no hits.
BO11984.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:22:32 Download gff for
BO11984.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1304-PA | 1..783 | 15..798 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 04:52:45 Download gff for
BO11984.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1304-PA | 1..783 | 15..798 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-12 07:59:02 Download gff for
BO11984.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1304-RA | 17..803 | 12..798 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-09 05:29:31 Download gff for
BO11984.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1304-RA | 17..803 | 12..798 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-09 05:29:31 Download gff for
BO11984.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 20964617..20965403 | 12..798 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-12 07:59:02 Download gff for
BO11984.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 20835644..20836430 | 12..798 | 99 | | Plus |
BO11984.5prime Sequence
812 bp (791 high quality bases) assembled on 2006-04-19
> BO11984.5prime
GAAGTTATCAGTCGACATGAGATCCGTTAAGGCAGCGATTTTGCTCGGTA
GCTTTTTGCTGCTGTTGGCAGTGCCCGTACATTCGGCACCTGGTAGCCTC
AACGGTCGAGTGGTGGGCGGTGAGGATGCCGTGAAAAATCAGTTTCCCCA
CCAGGTGTCCCTGAGGAACGCCGGCTCCCACAGCTGTGGAGGTTCGATTC
TGTCCAGGAACTACGTCTTAACCGCTGCCCATTGTGTAACCAATCAGGAC
TCAAATGGCAATTCCGTTCCAATTGCTGCGGAGCGTTTCACCATTCGAGC
GGGCTCCAACGATCGATTCAGCGGTGGAGTCCTTGTCCAGGTGGCCGAGG
TAATTGTCCACGAGGAGTATGGTAACTTCCTTAACGACGTTGCTCTGCTG
CGACTAGAGAGCCCACTGATCCTGTCCGCGAGTATTCAGCCCATCGATCT
ACCCACTGCGGATACTCCAGCGGATGTGGACGTCATCATTTCCGGCTGGG
GAAGGATCAAACACCAGGGAGACTTGCCACGCTATCTGCAGTACAACACC
CTGAAGTCCATTTCCTTGGAGAGGTGCGACGAACTGATCGGCTGGGGAGT
CCAGAGCGAGTTGTGCCTCATCCACGAGGCCGATAATGGAGCGTGCAATG
GGGACTCCGGTGGTCCGGCCGTATATAACAACCAAGTGGTGGGCGTGGCC
GGGTTCGTGTGGTCCGCCTGTGGAACGAGCTATCCAGATGGATATGCCAG
GGTGTACTACCACAACGAATGGATTAAGAATAACTCGGATGTGAAAGCAA
GCTTTCTAGACC
BO11984.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:34:41
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG1304-PA | 783 | CG1304-RA | 1..780 | 17..796 | 3900 | 100 | Plus |
| CG2071-PA | 780 | Ser6-RA | 253..542 | 269..558 | 1150 | 95.8 | Plus |
| CG2071-PA | 780 | Ser6-RA | 85..221 | 101..237 | 460 | 93.4 | Plus |
| CG2071-PA | 780 | Ser6-RA | 628..692 | 644..708 | 200 | 92.3 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 20:53:17
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG1304-RA | 893 | CG1304-RA | 17..796 | 17..796 | 3900 | 100 | Plus |
| Ser6-RA | 901 | CG2071-RA | 36..755 | 34..753 | 2165 | 87.2 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 20:53:13
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 20964624..20965403 | 796..17 | 3900 | 100 | Minus |
| X | 23542271 | X | 20962751..20963470 | 753..34 | 2100 | 86.7 | Minus |
Blast to na_te.dros performed on 2015-02-10 20:53:15 has no hits.
BO11984.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:22:33 Download gff for
BO11984.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1304-PA | 1..783 | 17..800 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 04:52:47 Download gff for
BO11984.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1304-PA | 1..783 | 17..800 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 04:02:34 Download gff for
BO11984.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1304-RA | 17..803 | 17..803 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:33:30 Download gff for
BO11984.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1304-RA | 17..803 | 17..803 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:33:30 Download gff for
BO11984.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 20964617..20965403 | 17..803 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 04:02:34 Download gff for
BO11984.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 20835644..20836430 | 17..803 | 99 | | Minus |
BO11984.complete Sequence
814 bp assembled on 2006-10-11
GenBank Submission: FJ632268
> BO11984.complete
GAAGTTATCAGTCGACATGAGATCCGTTAAGGCAGCGATTTTGCTCGGTA
GCTTTTTGCTGCTGTTGGCAGTGCCCGTACATTCGGCACCTGGTAGCCTC
AACGGTCGAGTGGTGGGCGGTGAGGATGCCGTGAAAAATCAGTTTCCCCA
CCAGGTGTCCCTGAGGAACGCCGGCTCCCACAGCTGTGGAGGTTCGATTC
TGTCCAGGAACTACGTCTTAACCGCTGCCCATTGTGTAACCAATCAGGAC
TCAAATGGCAATTCCGTTCCAATTGCTGCGGAGCGTTTCACCATTCGAGC
GGGCTCCAACGATCGATTCAGCGGTGGAGTCCTTGTCCAGGTGGCCGAGG
TAATTGTCCACGAGGAGTATGGTAACTTCCTTAACGACGTTGCTCTGCTG
CGACTAGAGAGCCCACTGATCCTGTCCGCGAGTATTCAGCCCATCGATCT
ACCCACTGCGGATACTCCAGCGGATGTGGACGTCATCATTTCCGGCTGGG
GAAGGATCAAACACCAGGGAGACTTGCCACGCTATCTGCAGTACAACACC
CTGAAGTCCATTTCCTTGGAGAGGTGCGACGAACTGATCGGCTGGGGAGT
CCAGAGCGAGTTGTGCCTCATCCACGAGGCCGATAATGGAGCGTGCAATG
GGGACTCCGGTGGTCCGGCCGTATATAACAACCAAGTGGTGGGCGTGGCC
GGGTTCGTGTGGTCCGCCTGTGGAACGAGCTATCCAGATGGATATGCCAG
GGTGTACTACCACAACGAATGGATTAAGAATAACTCGGATGTGAAAGCAA
GCTTTCTAGACCAT
BO11984.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 00:31:36
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG1304-RA | 783 | CG1304-PA | 1..780 | 17..796 | 3900 | 100 | Plus |
| Ser6-RA | 780 | CG2071-PA | 18..737 | 34..753 | 2100 | 86.7 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 00:31:37
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG1304-RA | 893 | CG1304-RA | 17..796 | 17..796 | 3900 | 100 | Plus |
| Ser6-RA | 901 | CG2071-RA | 36..755 | 34..753 | 2100 | 86.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 00:31:33
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 20964624..20965403 | 796..17 | 3900 | 100 | Minus |
| X | 23542271 | X | 20962751..20963470 | 753..34 | 2100 | 86.7 | Minus |
Blast to na_te.dros performed on 2014-11-28 00:31:34 has no hits.
BO11984.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 13:58:43 Download gff for
BO11984.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1304-RA | 1..783 | 17..800 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:10:20 Download gff for
BO11984.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1304-RA | 14..800 | 17..803 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:26:18 Download gff for
BO11984.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1304-RA | 17..796 | 17..798 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 13:58:43 Download gff for
BO11984.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1304-RA | 14..800 | 17..803 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:33:22 Download gff for
BO11984.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1304-RA | 17..796 | 17..798 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:33:22 Download gff for
BO11984.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 20964622..20965403 | 17..798 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:26:18 Download gff for
BO11984.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 20835649..20836430 | 17..798 | 99 | | Minus |
BO11984.pep Sequence
Translation from 16 to 814
> BO11984.pep
MRSVKAAILLGSFLLLLAVPVHSAPGSLNGRVVGGEDAVKNQFPHQVSLR
NAGSHSCGGSILSRNYVLTAAHCVTNQDSNGNSVPIAAERFTIRAGSNDR
FSGGVLVQVAEVIVHEEYGNFLNDVALLRLESPLILSASIQPIDLPTADT
PADVDVIISGWGRIKHQGDLPRYLQYNTLKSISLERCDELIGWGVQSELC
LIHEADNGACNGDSGGPAVYNNQVVGVAGFVWSACGTSYPDGYARVYYHN
EWIKNNSDVKASFLDH
BO11984.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:59:34
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG1304-PA | 260 | CG1304-PA | 1..260 | 1..260 | 1364 | 100 | Plus |
| Ser6-PA | 259 | CG2071-PA | 5..259 | 5..259 | 1127 | 82.7 | Plus |
| CG9676-PA | 251 | CG9676-PA | 7..251 | 12..259 | 504 | 45.6 | Plus |
| CG32523-PA | 262 | CG32523-PA | 24..256 | 19..253 | 443 | 43.3 | Plus |
| CG4653-PA | 254 | CG4653-PA | 37..253 | 44..257 | 433 | 40.9 | Plus |
