Clone BO11985 Report

Search the DGRC for BO11985

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:119
Well:85
Vector:pDNR-Dual
Associated Gene/TranscriptNelf-E-RA
Protein status:BO11985.pep: validated full length
Sequenced Size:874

Clone Sequence Records

BO11985.3prime Sequence

744 bp (741 high quality bases) assembled on 2006-04-19

> BO11985.3prime
ATGGTCTAGAAAGCTTGCGAGCAAGAAGTCTTCATCGTATTGAACCATCT
CGCGGTGGTCCTTGTGGCTACCCTTTTGTGATTTGCTGGCGGCAATAGAT
GACCAGACTGCCGACGAGGAGGCATCGTTAATGGGCTCAATCTGGGGCTG
GCGTCTAGCCAACTGCACCTGCAAGTTGATGCCATTCACATTCTTGCCAT
GAATCTCCGCAATGGCGCGATCTGCCGACTCGGGTTTGGCGAAGGAAACA
AAGCCGCGACTCTTTTCGATCTCCATGGAGACATTGACAATGGTGCCGTA
GTCGTTGAATGTCTTTTTTAAGAAATCCTCGGTGACCTTGTTGCCGGACA
CGAAGATGGTATTGCCGGCCCGTGGCTTCTCTGGCTGCGCTGTGTCCATG
GGCACCTTCTCGGGCATGCCGCGCTCCTCTCGATCCCGCTCGGTGGCGAA
GTGTTGGTAGAGATTCTGTCGACGCGGCTCCTCCTTAATGATCTCACTAA
TGATCGTCTCCTGGGCCACGTCGTTCTGCGTAGACGAAAAGGGCTGGTAG
GAGGCAACAGTGGTTTCCGAGGTGGAGCGCTTGGCTCTTTCCTGTCCTTT
GGGCCGCTTGAAGGAGGTTTGATCTTGCTTGGTCTGCTTCTGGATGGCGG
GAATGGCGCCGCTTTTGATTAGTTTCCTGGCCACTTCACGGGCATCTCGC
GCATCCGTGGGACGCTTCAAGGTCAAGGAGCTCTCCGGCTCCGG

BO11985.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:34:41
Subject Length Description Subject Range Query Range Score Percent Strand
CG5994-PA 843 Nelf-E-RA 115..840 744..19 3630 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-03 17:41:12
Subject Length Description Subject Range Query Range Score Percent Strand
Nelf-E-RA 1227 CG5994-RA 251..976 744..19 3630 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-03 17:41:03
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 8600087..8600571 260..744 2425 100 Plus
3L 28110227 3L 8599831..8599999 93..261 845 100 Plus
3L 28110227 3L 8599693..8599767 19..93 375 100 Plus
Blast to na_te.dros performed on 2015-02-03 17:41:07 has no hits.

BO11985.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:22:35 Download gff for BO11985.3prime
Subject Subject Range Query Range Percent Splice Strand
CG5994-PA 115..843 18..744 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 04:52:48 Download gff for BO11985.3prime
Subject Subject Range Query Range Percent Splice Strand
CG5994-PA 115..843 18..744 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-09 05:37:00 Download gff for BO11985.3prime
Subject Subject Range Query Range Percent Splice Strand
Nelf-E-RA 251..982 13..744 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-03 19:03:38 Download gff for BO11985.3prime
Subject Subject Range Query Range Percent Splice Strand
Nelf-E-RA 251..982 13..744 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-03 19:03:38 Download gff for BO11985.3prime
Subject Subject Range Query Range Percent Splice Strand
3L 8599687..8599766 13..92 96 <- Plus
3L 8599831..8599997 93..259 100 <- Plus
3L 8600087..8600571 260..744 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-09 05:37:00 Download gff for BO11985.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 8592787..8592866 13..92 96 <- Plus
arm_3L 8592931..8593097 93..259 100 <- Plus
arm_3L 8593187..8593671 260..744 100   Plus

BO11985.5prime Sequence

852 bp (732 high quality bases) assembled on 2006-04-19

> BO11985.5prime
GAAGTTATCAGTCGACATGGTTTACATACACTTCCCCAACAATTTAACCG
AAGAGGAGCAAATGCTGCAGGCCAAGTATCAGAAACTCAAGAAAAAGAAA
AAGGCACTGCAAGCGCACAAGGCGCCCAAGCCGGAGCCGGAGAGCTCCTT
GACCTTGAAGCGTCCCACGGATGCGCGAGATGCCCGTGAAGTGGCCAGGA
AACTAATCAAAAGCGGCGCCATTCCCGCCATCCAGAAGCAGACCAAGCAA
GATCAAACCTCCTTCAAGCGGCCCAAAGGACAGGAAAGAGCCAAGCGCTC
CACCTCGGAAACCACTGTTGCCTCCTACCAGCCCTTTTCGTCTACGCAGA
ACGACGTGGCCCAGGAGACGATCATTAGTGAGATCATTAAGGAGGAGCCG
CGTCGACAGAATCTCTACCAACACTTCGCCACCGAGCGGGATCGAGAGGA
GCGCGGCATGCCCGAGAAGGTGCCCATGGACACAGCGCAGCCAGAGAAGC
CACGGGCCGGCAATACCATCTTCGTGTCCGGCAACAAGGTCACCGAGGAT
TTCTTAAAAAAGACATTCAACGACTACGGCACCATTGTCAATGTCTCCAT
GGAGATCGAAAAGAGTCGCGGCTTTGTTTCCTTCGCCAAACCCGAGTCGG
CAGATCGCGCCATTGCGGAGATTCATGGCAAGAATGTGAATGGCATCAAC
TTGCAGGTGCAGTTGGCTAGACGCCAGCCCCAGATTGAGCCCATTAACGA
TGCCTCCTCGTCGGCAGTCTGGTCATCTATTGCCGCCAGCAAATCACAAA
AGGGGAGCCACAAGGACCACCGCGAGATGGTTCAATACGATGAAGACTTC
TT

BO11985.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:34:43
Subject Length Description Subject Range Query Range Score Percent Strand
CG5994-PA 843 Nelf-E-RA 1..836 17..852 4155 99.8 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 05:11:13
Subject Length Description Subject Range Query Range Score Percent Strand
Nelf-E-RA 1227 CG5994-RA 135..972 15..852 4175 99.9 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 05:11:06
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 8600087..8600606 615..96 2600 100 Minus
3L 28110227 3L 8599831..8599999 782..614 845 100 Minus
3L 28110227 3L 8600663..8600745 97..15 415 100 Minus
3L 28110227 3L 8599697..8599767 852..782 340 98.6 Minus
Blast to na_te.dros performed on 2015-02-12 05:11:10 has no hits.

BO11985.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:22:36 Download gff for BO11985.5prime
Subject Subject Range Query Range Percent Splice Strand
CG5994-PA 1..836 17..852 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 04:52:49 Download gff for BO11985.5prime
Subject Subject Range Query Range Percent Splice Strand
CG5994-PA 1..836 17..852 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 13:51:31 Download gff for BO11985.5prime
Subject Subject Range Query Range Percent Splice Strand
Nelf-E-RA 130..972 8..852 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 07:56:31 Download gff for BO11985.5prime
Subject Subject Range Query Range Percent Splice Strand
Nelf-E-RA 130..972 8..852 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 07:56:31 Download gff for BO11985.5prime
Subject Subject Range Query Range Percent Splice Strand
3L 8599697..8599766 783..852 98 <- Minus
3L 8599831..8599997 616..782 100 <- Minus
3L 8600087..8600604 98..615 100 <- Minus
3L 8600663..8600750 8..97 95   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 13:51:31 Download gff for BO11985.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 8593763..8593850 8..97 95   Minus
arm_3L 8592797..8592866 783..852 98 <- Minus
arm_3L 8592931..8593097 616..782 100 <- Minus
arm_3L 8593187..8593704 98..615 100 <- Minus

BO11985.complete Sequence

874 bp assembled on 2006-10-11

GenBank Submission: FJ632269

> BO11985.complete
GAAGTTATCAGTCGACATGGTTTACATACACTTCCCCAACAATTTAACCG
AAGAGGAGCAAATGCTGCAGGCCAAGTATCAGAAACTCAAGAAAAAGAAA
AAGGCACTGCAAGCGCACAAGGCGCCCAAGCCGGAGCCGGAGAGCTCCTT
GACCTTGAAGCGTCCCACGGATGCGCGAGATGCCCGTGAAGTGGCCAGGA
AACTAATCAAAAGCGGCGCCATTCCCGCCATCCAGAAGCAGACCAAGCAA
GATCAAACCTCCTTCAAGCGGCCCAAAGGACAGGAAAGAGCCAAGCGCTC
CACCTCGGAAACCACTGTTGCCTCCTACCAGCCCTTTTCGTCTACGCAGA
ACGACGTGGCCCAGGAGACGATCATTAGTGAGATCATTAAGGAGGAGCCG
CGTCGACAGAATCTCTACCAACACTTCGCCACCGAGCGGGATCGAGAGGA
GCGCGGCATGCCCGAGAAGGTGCCCATGGACACAGCGCAGCCAGAGAAGC
CACGGGCCGGCAATACCATCTTCGTGTCCGGCAACAAGGTCACCGAGGAT
TTCTTAAAAAAGACATTCAACGACTACGGCACCATTGTCAATGTCTCCAT
GGAGATCGAAAAGAGTCGCGGCTTTGTTTCCTTCGCCAAACCCGAGTCGG
CAGATCGCGCCATTGCGGAGATTCATGGCAAGAATGTGAATGGCATCAAC
TTGCAGGTGCAGTTGGCTAGACGCCAGCCCCAGATTGAGCCCATTAACGA
TGCCTCCTCGTCGGCAGTCTGGTCATCTATTGCCGCCAGCAAATCACAAA
AGGGTAGCCACAAGGACCACCGCGAGATGGTTCAATACGATGAAGACTTC
TTGCTCGCAAGCTTTCTAGACCAT

BO11985.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 20:49:46
Subject Length Description Subject Range Query Range Score Percent Strand
Nelf-E-RA 843 CG5994-PA 1..840 17..856 4200 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 20:49:47
Subject Length Description Subject Range Query Range Score Percent Strand
Nelf-E-RA 1227 CG5994-RA 135..976 15..856 4210 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 20:49:43
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 8600087..8600606 615..96 2600 100 Minus
3L 28110227 3L 8599831..8599999 782..614 845 100 Minus
3L 28110227 3L 8600663..8600745 97..15 415 100 Minus
3L 28110227 3L 8599693..8599767 856..782 375 100 Minus
Blast to na_te.dros performed on 2014-11-27 20:49:44 has no hits.

BO11985.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:11:10 Download gff for BO11985.complete
Subject Subject Range Query Range Percent Splice Strand
Nelf-E-RA 1..843 17..857 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:29:14 Download gff for BO11985.complete
Subject Subject Range Query Range Percent Splice Strand
Nelf-E-RA 125..977 8..862 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:11:54 Download gff for BO11985.complete
Subject Subject Range Query Range Percent Splice Strand
Nelf-E-RA 137..976 17..858 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:11:10 Download gff for BO11985.complete
Subject Subject Range Query Range Percent Splice Strand
Nelf-E-RA 125..977 8..862 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:29:07 Download gff for BO11985.complete
Subject Subject Range Query Range Percent Splice Strand
Nelf-E-RA 137..976 17..858 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:29:07 Download gff for BO11985.complete
Subject Subject Range Query Range Percent Splice Strand
3L 8599691..8599766 783..858 97 <- Minus
3L 8599831..8599997 616..782 100 <- Minus
3L 8600087..8600604 98..615 100 <- Minus
3L 8600663..8600743 17..97 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:11:54 Download gff for BO11985.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 8592791..8592866 783..858 97 <- Minus
arm_3L 8592931..8593097 616..782 100 <- Minus
arm_3L 8593187..8593704 98..615 100 <- Minus
arm_3L 8593763..8593843 17..97 100   Minus

BO11985.pep Sequence

Translation from 16 to 874

> BO11985.pep
MVYIHFPNNLTEEEQMLQAKYQKLKKKKKALQAHKAPKPEPESSLTLKRP
TDARDAREVARKLIKSGAIPAIQKQTKQDQTSFKRPKGQERAKRSTSETT
VASYQPFSSTQNDVAQETIISEIIKEEPRRQNLYQHFATERDREERGMPE
KVPMDTAQPEKPRAGNTIFVSGNKVTEDFLKKTFNDYGTIVNVSMEIEKS
RGFVSFAKPESADRAIAEIHGKNVNGINLQVQLARRQPQIEPINDASSSA
VWSSIAASKSQKGSHKDHREMVQYDEDFLLASFLDH

BO11985.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 00:36:38
Subject Length Description Subject Range Query Range Score Percent Strand
Nelf-E-PA 280 CG5994-PA 1..280 1..280 1422 100 Plus