Clone Sequence Records
BO11985.3prime Sequence
744 bp (741 high quality bases) assembled on 2006-04-19
> BO11985.3prime
ATGGTCTAGAAAGCTTGCGAGCAAGAAGTCTTCATCGTATTGAACCATCT
CGCGGTGGTCCTTGTGGCTACCCTTTTGTGATTTGCTGGCGGCAATAGAT
GACCAGACTGCCGACGAGGAGGCATCGTTAATGGGCTCAATCTGGGGCTG
GCGTCTAGCCAACTGCACCTGCAAGTTGATGCCATTCACATTCTTGCCAT
GAATCTCCGCAATGGCGCGATCTGCCGACTCGGGTTTGGCGAAGGAAACA
AAGCCGCGACTCTTTTCGATCTCCATGGAGACATTGACAATGGTGCCGTA
GTCGTTGAATGTCTTTTTTAAGAAATCCTCGGTGACCTTGTTGCCGGACA
CGAAGATGGTATTGCCGGCCCGTGGCTTCTCTGGCTGCGCTGTGTCCATG
GGCACCTTCTCGGGCATGCCGCGCTCCTCTCGATCCCGCTCGGTGGCGAA
GTGTTGGTAGAGATTCTGTCGACGCGGCTCCTCCTTAATGATCTCACTAA
TGATCGTCTCCTGGGCCACGTCGTTCTGCGTAGACGAAAAGGGCTGGTAG
GAGGCAACAGTGGTTTCCGAGGTGGAGCGCTTGGCTCTTTCCTGTCCTTT
GGGCCGCTTGAAGGAGGTTTGATCTTGCTTGGTCTGCTTCTGGATGGCGG
GAATGGCGCCGCTTTTGATTAGTTTCCTGGCCACTTCACGGGCATCTCGC
GCATCCGTGGGACGCTTCAAGGTCAAGGAGCTCTCCGGCTCCGG
BO11985.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:34:41
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5994-PA | 843 | Nelf-E-RA | 115..840 | 744..19 | 3630 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-03 17:41:12
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Nelf-E-RA | 1227 | CG5994-RA | 251..976 | 744..19 | 3630 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-03 17:41:03
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 8600087..8600571 | 260..744 | 2425 | 100 | Plus |
3L | 28110227 | 3L | 8599831..8599999 | 93..261 | 845 | 100 | Plus |
3L | 28110227 | 3L | 8599693..8599767 | 19..93 | 375 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-03 17:41:07 has no hits.
BO11985.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:22:35 Download gff for
BO11985.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5994-PA | 115..843 | 18..744 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 04:52:48 Download gff for
BO11985.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5994-PA | 115..843 | 18..744 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-09 05:37:00 Download gff for
BO11985.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Nelf-E-RA | 251..982 | 13..744 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-03 19:03:38 Download gff for
BO11985.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Nelf-E-RA | 251..982 | 13..744 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-03 19:03:38 Download gff for
BO11985.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 8599687..8599766 | 13..92 | 96 | <- | Plus |
3L | 8599831..8599997 | 93..259 | 100 | <- | Plus |
3L | 8600087..8600571 | 260..744 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-09 05:37:00 Download gff for
BO11985.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 8592787..8592866 | 13..92 | 96 | <- | Plus |
arm_3L | 8592931..8593097 | 93..259 | 100 | <- | Plus |
arm_3L | 8593187..8593671 | 260..744 | 100 | | Plus |
BO11985.5prime Sequence
852 bp (732 high quality bases) assembled on 2006-04-19
> BO11985.5prime
GAAGTTATCAGTCGACATGGTTTACATACACTTCCCCAACAATTTAACCG
AAGAGGAGCAAATGCTGCAGGCCAAGTATCAGAAACTCAAGAAAAAGAAA
AAGGCACTGCAAGCGCACAAGGCGCCCAAGCCGGAGCCGGAGAGCTCCTT
GACCTTGAAGCGTCCCACGGATGCGCGAGATGCCCGTGAAGTGGCCAGGA
AACTAATCAAAAGCGGCGCCATTCCCGCCATCCAGAAGCAGACCAAGCAA
GATCAAACCTCCTTCAAGCGGCCCAAAGGACAGGAAAGAGCCAAGCGCTC
CACCTCGGAAACCACTGTTGCCTCCTACCAGCCCTTTTCGTCTACGCAGA
ACGACGTGGCCCAGGAGACGATCATTAGTGAGATCATTAAGGAGGAGCCG
CGTCGACAGAATCTCTACCAACACTTCGCCACCGAGCGGGATCGAGAGGA
GCGCGGCATGCCCGAGAAGGTGCCCATGGACACAGCGCAGCCAGAGAAGC
CACGGGCCGGCAATACCATCTTCGTGTCCGGCAACAAGGTCACCGAGGAT
TTCTTAAAAAAGACATTCAACGACTACGGCACCATTGTCAATGTCTCCAT
GGAGATCGAAAAGAGTCGCGGCTTTGTTTCCTTCGCCAAACCCGAGTCGG
CAGATCGCGCCATTGCGGAGATTCATGGCAAGAATGTGAATGGCATCAAC
TTGCAGGTGCAGTTGGCTAGACGCCAGCCCCAGATTGAGCCCATTAACGA
TGCCTCCTCGTCGGCAGTCTGGTCATCTATTGCCGCCAGCAAATCACAAA
AGGGGAGCCACAAGGACCACCGCGAGATGGTTCAATACGATGAAGACTTC
TT
BO11985.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:34:43
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5994-PA | 843 | Nelf-E-RA | 1..836 | 17..852 | 4155 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 05:11:13
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Nelf-E-RA | 1227 | CG5994-RA | 135..972 | 15..852 | 4175 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 05:11:06
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 8600087..8600606 | 615..96 | 2600 | 100 | Minus |
3L | 28110227 | 3L | 8599831..8599999 | 782..614 | 845 | 100 | Minus |
3L | 28110227 | 3L | 8600663..8600745 | 97..15 | 415 | 100 | Minus |
3L | 28110227 | 3L | 8599697..8599767 | 852..782 | 340 | 98.6 | Minus |
Blast to na_te.dros performed on 2015-02-12 05:11:10 has no hits.
BO11985.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:22:36 Download gff for
BO11985.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5994-PA | 1..836 | 17..852 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 04:52:49 Download gff for
BO11985.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5994-PA | 1..836 | 17..852 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 13:51:31 Download gff for
BO11985.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Nelf-E-RA | 130..972 | 8..852 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 07:56:31 Download gff for
BO11985.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Nelf-E-RA | 130..972 | 8..852 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 07:56:31 Download gff for
BO11985.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 8599697..8599766 | 783..852 | 98 | <- | Minus |
3L | 8599831..8599997 | 616..782 | 100 | <- | Minus |
3L | 8600087..8600604 | 98..615 | 100 | <- | Minus |
3L | 8600663..8600750 | 8..97 | 95 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 13:51:31 Download gff for
BO11985.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 8593763..8593850 | 8..97 | 95 | | Minus |
arm_3L | 8592797..8592866 | 783..852 | 98 | <- | Minus |
arm_3L | 8592931..8593097 | 616..782 | 100 | <- | Minus |
arm_3L | 8593187..8593704 | 98..615 | 100 | <- | Minus |
BO11985.complete Sequence
874 bp assembled on 2006-10-11
GenBank Submission: FJ632269
> BO11985.complete
GAAGTTATCAGTCGACATGGTTTACATACACTTCCCCAACAATTTAACCG
AAGAGGAGCAAATGCTGCAGGCCAAGTATCAGAAACTCAAGAAAAAGAAA
AAGGCACTGCAAGCGCACAAGGCGCCCAAGCCGGAGCCGGAGAGCTCCTT
GACCTTGAAGCGTCCCACGGATGCGCGAGATGCCCGTGAAGTGGCCAGGA
AACTAATCAAAAGCGGCGCCATTCCCGCCATCCAGAAGCAGACCAAGCAA
GATCAAACCTCCTTCAAGCGGCCCAAAGGACAGGAAAGAGCCAAGCGCTC
CACCTCGGAAACCACTGTTGCCTCCTACCAGCCCTTTTCGTCTACGCAGA
ACGACGTGGCCCAGGAGACGATCATTAGTGAGATCATTAAGGAGGAGCCG
CGTCGACAGAATCTCTACCAACACTTCGCCACCGAGCGGGATCGAGAGGA
GCGCGGCATGCCCGAGAAGGTGCCCATGGACACAGCGCAGCCAGAGAAGC
CACGGGCCGGCAATACCATCTTCGTGTCCGGCAACAAGGTCACCGAGGAT
TTCTTAAAAAAGACATTCAACGACTACGGCACCATTGTCAATGTCTCCAT
GGAGATCGAAAAGAGTCGCGGCTTTGTTTCCTTCGCCAAACCCGAGTCGG
CAGATCGCGCCATTGCGGAGATTCATGGCAAGAATGTGAATGGCATCAAC
TTGCAGGTGCAGTTGGCTAGACGCCAGCCCCAGATTGAGCCCATTAACGA
TGCCTCCTCGTCGGCAGTCTGGTCATCTATTGCCGCCAGCAAATCACAAA
AGGGTAGCCACAAGGACCACCGCGAGATGGTTCAATACGATGAAGACTTC
TTGCTCGCAAGCTTTCTAGACCAT
BO11985.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 20:49:46
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Nelf-E-RA | 843 | CG5994-PA | 1..840 | 17..856 | 4200 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 20:49:47
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Nelf-E-RA | 1227 | CG5994-RA | 135..976 | 15..856 | 4210 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 20:49:43
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 8600087..8600606 | 615..96 | 2600 | 100 | Minus |
3L | 28110227 | 3L | 8599831..8599999 | 782..614 | 845 | 100 | Minus |
3L | 28110227 | 3L | 8600663..8600745 | 97..15 | 415 | 100 | Minus |
3L | 28110227 | 3L | 8599693..8599767 | 856..782 | 375 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 20:49:44 has no hits.
BO11985.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:11:10 Download gff for
BO11985.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Nelf-E-RA | 1..843 | 17..857 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:29:14 Download gff for
BO11985.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Nelf-E-RA | 125..977 | 8..862 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:11:54 Download gff for
BO11985.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Nelf-E-RA | 137..976 | 17..858 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:11:10 Download gff for
BO11985.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Nelf-E-RA | 125..977 | 8..862 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:29:07 Download gff for
BO11985.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Nelf-E-RA | 137..976 | 17..858 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:29:07 Download gff for
BO11985.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 8599691..8599766 | 783..858 | 97 | <- | Minus |
3L | 8599831..8599997 | 616..782 | 100 | <- | Minus |
3L | 8600087..8600604 | 98..615 | 100 | <- | Minus |
3L | 8600663..8600743 | 17..97 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:11:54 Download gff for
BO11985.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 8592791..8592866 | 783..858 | 97 | <- | Minus |
arm_3L | 8592931..8593097 | 616..782 | 100 | <- | Minus |
arm_3L | 8593187..8593704 | 98..615 | 100 | <- | Minus |
arm_3L | 8593763..8593843 | 17..97 | 100 | | Minus |
BO11985.pep Sequence
Translation from 16 to 874
> BO11985.pep
MVYIHFPNNLTEEEQMLQAKYQKLKKKKKALQAHKAPKPEPESSLTLKRP
TDARDAREVARKLIKSGAIPAIQKQTKQDQTSFKRPKGQERAKRSTSETT
VASYQPFSSTQNDVAQETIISEIIKEEPRRQNLYQHFATERDREERGMPE
KVPMDTAQPEKPRAGNTIFVSGNKVTEDFLKKTFNDYGTIVNVSMEIEKS
RGFVSFAKPESADRAIAEIHGKNVNGINLQVQLARRQPQIEPINDASSSA
VWSSIAASKSQKGSHKDHREMVQYDEDFLLASFLDH
BO11985.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 00:36:38
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Nelf-E-PA | 280 | CG5994-PA | 1..280 | 1..280 | 1422 | 100 | Plus |