Clone Sequence Records
BO11988.3prime Sequence
692 bp (691 high quality bases) assembled on 2006-04-19
> BO11988.3prime
ATGGTCTAGAAAGCTTGCGTGATCCATCGCCTCGGGCGGCAGGACGATGT
TGCAGCCCAGGAGACCGCGTCCACTCCACGTTTTCGGCACCAGGATGAGG
TCCAACTGCTGCTCGCCGCGCTTCACTTTCAGCTGGACATTCTGGCTCTG
CATGTTGCGCACCAGCTCGCCAATCTGGGCGAGATCTCCCTTGAAGTTGC
CGCTATTGATGGAGCCAAAGCGGAGGATGGCATCGCCGGCACAGAGACCA
GCTCTTTCGGCGGGCGAATCGGGACTGACCAGATTGACCACCACGATGGC
GCGTGCAGGAGCAAGATCCGTGATATTAGCGCCACCGGGTGAACGGTCGC
TGTCCAGGTCCAAAGCGGAGGCGCGGTTCACCAGCTCCGGATCTGTGGTG
GCAATCTCGCTGTGATATTGGTTGAGCAGCGTCTGGATCTGGTTCATCAG
CTCCTTGTGGTCGTTCTGCAGGCAGATGATCGTCTGTCGCGCTAGGCGCA
CCTGGTAAACGTCGATGTCGTTGCGCGGAAAACCCTCGGCGTCCACCAGT
GGTCCACTCATGCCCACATTGTCGTTGGCGGCCAGGATCTGTCCGTTTCT
GTTGATCTGCGCCTCCAGCTGCTTTTTAGCGTTAATCAGACGCTCCAGGC
GCTCCTTGGTCGTCGTCCCAGCGGCCATGTCGACTGATAACT
BO11988.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:34:46
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9588-PA | 663 | CG9588-RA | 1..660 | 678..19 | 3275 | 99.8 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 22:39:47
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9588-RA | 1226 | CG9588-RA | 152..812 | 679..19 | 3290 | 99.8 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 22:39:41
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 13675800..13676127 | 249..576 | 1625 | 99.7 | Plus |
3R | 32079331 | 3R | 13675506..13675736 | 19..249 | 1155 | 100 | Plus |
3R | 32079331 | 3R | 13676428..13676530 | 577..679 | 515 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-10 22:39:44 has no hits.
BO11988.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:22:41 Download gff for
BO11988.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9588-PA | 1..663 | 16..678 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 04:52:56 Download gff for
BO11988.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9588-PA | 1..663 | 16..678 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 19:57:29 Download gff for
BO11988.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9588-RA | 149..812 | 19..685 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 00:04:05 Download gff for
BO11988.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9588-RA | 149..812 | 19..685 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 00:04:05 Download gff for
BO11988.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 13675506..13675736 | 19..249 | 100 | <- | Plus |
3R | 13675801..13676127 | 250..576 | 99 | <- | Plus |
3R | 13676428..13676533 | 577..685 | 97 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 19:57:29 Download gff for
BO11988.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 9501228..9501458 | 19..249 | 100 | <- | Plus |
arm_3R | 9501523..9501849 | 250..576 | 99 | <- | Plus |
arm_3R | 9502150..9502255 | 577..685 | 97 | | Plus |
BO11988.5prime Sequence
692 bp (691 high quality bases) assembled on 2006-04-19
> BO11988.5prime
GAAGTTATCAGTCGACATGGCCGCTGGGACGACGACCAAGGAGCGCCTGG
AGCGTCTGATTAACGCTAAAAAGCAGCTGGAGGCGCAGATCAACAGAAAC
GGACAGATCCTGGCCGCCAACGACAATGTGGGCATGAGTGGACCACTGGT
GGACGCCGAGGGTTTTCCGCGCAACGACATCGACGTTTACCAGGTGCGCC
TAGCGCGACAGACGATCATCTGCCTGCAGAACGACCACAAGGAGCTGATG
AACCAGATCCAGACGCTGCTCAACCAATATCACAGCGAGATTGCCACCAC
AGATCCGGAGCTGGTGAACCGCGCCTCCGCTTTGGACCTGGACAGCGACC
GTTCACCCGGTGGCGCTAATATCACGGATCTTGCTCCTGCACGCGCCATC
GTGGTGGTCAATCTGGTCAGTCCCGATTCGCCCGCCGAAAGAGCTGGTCT
CTGTGCCGGCGATGCCATCCTCCGCTTTGGCTCCATCAATAGCGGCAACT
TCAAGGGAGATCTCGCCCAGATTGGCGAGCTGGTGCGCAACATGCAGAGC
CAGAATGTCCAGCTGAAAGTGAAGCGCGGCGAGCAGCAGTTGGACCTCAT
CCTGGTGCCGAAAACGTGGAGTGGACGCGGTCTCCTGGGCTGCAACATCG
TCCTGCCGCCCGAGGCGATGGATCACGCAAGCTTTCTAGACC
BO11988.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:34:47
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9588-PA | 663 | CG9588-RA | 1..660 | 17..676 | 3275 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 09:53:03
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9588-RA | 1226 | CG9588-RA | 152..812 | 16..676 | 3290 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 09:53:00
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 13675800..13676127 | 446..119 | 1625 | 99.7 | Minus |
3R | 32079331 | 3R | 13675506..13675736 | 676..446 | 1155 | 100 | Minus |
3R | 32079331 | 3R | 13676428..13676530 | 118..16 | 515 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-13 09:53:02 has no hits.
BO11988.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:22:43 Download gff for
BO11988.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9588-PA | 1..663 | 17..679 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 04:52:57 Download gff for
BO11988.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9588-PA | 1..663 | 17..679 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-02 11:47:20 Download gff for
BO11988.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9588-RA | 149..812 | 10..676 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 14:25:46 Download gff for
BO11988.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9588-RA | 149..812 | 10..676 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 14:25:46 Download gff for
BO11988.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 13675506..13675736 | 446..676 | 100 | <- | Minus |
3R | 13675801..13676127 | 119..445 | 99 | <- | Minus |
3R | 13676428..13676533 | 10..118 | 97 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-02 11:47:20 Download gff for
BO11988.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 9501228..9501458 | 446..676 | 100 | <- | Minus |
arm_3R | 9501523..9501849 | 119..445 | 99 | <- | Minus |
arm_3R | 9502150..9502255 | 10..118 | 97 | | Minus |
BO11988.complete Sequence
694 bp assembled on 2006-10-11
GenBank Submission: FJ632270
> BO11988.complete
GAAGTTATCAGTCGACATGGCCGCTGGGACGACGACCAAGGAGCGCCTGG
AGCGTCTGATTAACGCTAAAAAGCAGCTGGAGGCGCAGATCAACAGAAAC
GGACAGATCCTGGCCGCCAACGACAATGTGGGCATGAGTGGACCACTGGT
GGACGCCGAGGGTTTTCCGCGCAACGACATCGACGTTTACCAGGTGCGCC
TAGCGCGACAGACGATCATCTGCCTGCAGAACGACCACAAGGAGCTGATG
AACCAGATCCAGACGCTGCTCAACCAATATCACAGCGAGATTGCCACCAC
AGATCCGGAGCTGGTGAACCGCGCCTCCGCTTTGGACCTGGACAGCGACC
GTTCACCCGGTGGCGCTAATATCACGGATCTTGCTCCTGCACGCGCCATC
GTGGTGGTCAATCTGGTCAGTCCCGATTCGCCCGCCGAAAGAGCTGGTCT
CTGTGCCGGCGATGCCATCCTCCGCTTTGGCTCCATCAATAGCGGCAACT
TCAAGGGAGATCTCGCCCAGATTGGCGAGCTGGTGCGCAACATGCAGAGC
CAGAATGTCCAGCTGAAAGTGAAGCGCGGCGAGCAGCAGTTGGACCTCAT
CCTGGTGCCGAAAACGTGGAGTGGACGCGGTCTCCTGGGCTGCAACATCG
TCCTGCCGCCCGAGGCGATGGATCACGCAAGCTTTCTAGACCAT
BO11988.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 16:04:59
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9588-RA | 663 | CG9588-PA | 1..660 | 17..676 | 3285 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:05:00
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9588-RA | 1226 | CG9588-RA | 152..812 | 16..676 | 3290 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 16:04:57
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 13675800..13676127 | 446..119 | 1625 | 99.7 | Minus |
3R | 32079331 | 3R | 13675506..13675736 | 676..446 | 1155 | 100 | Minus |
3R | 32079331 | 3R | 13676428..13676530 | 118..16 | 515 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 16:04:58 has no hits.
BO11988.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:11:17 Download gff for
BO11988.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9588-RA | 1..663 | 17..679 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:29:25 Download gff for
BO11988.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9588-RA | 145..808 | 10..676 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:50:16 Download gff for
BO11988.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9588-RA | 153..812 | 17..678 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:11:17 Download gff for
BO11988.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9588-RA | 145..808 | 10..676 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 17:10:01 Download gff for
BO11988.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9588-RA | 153..812 | 17..678 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 17:10:01 Download gff for
BO11988.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 13675503..13675736 | 446..678 | 99 | <- | Minus |
3R | 13675801..13676127 | 119..445 | 99 | <- | Minus |
3R | 13676428..13676529 | 17..118 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:50:16 Download gff for
BO11988.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 9501225..9501458 | 446..678 | 99 | <- | Minus |
arm_3R | 9501523..9501849 | 119..445 | 99 | <- | Minus |
arm_3R | 9502150..9502251 | 17..118 | 100 | | Minus |
BO11988.pep Sequence
Translation from 16 to 694
> BO11988.pep
MAAGTTTKERLERLINAKKQLEAQINRNGQILAANDNVGMSGPLVDAEGF
PRNDIDVYQVRLARQTIICLQNDHKELMNQIQTLLNQYHSEIATTDPELV
NRASALDLDSDRSPGGANITDLAPARAIVVVNLVSPDSPAERAGLCAGDA
ILRFGSINSGNFKGDLAQIGELVRNMQSQNVQLKVKRGEQQLDLILVPKT
WSGRGLLGCNIVLPPEAMDHASFLDH
BO11988.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 00:36:15
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9588-PA | 220 | CG9588-PA | 1..220 | 1..220 | 1116 | 100 | Plus |