Clone BO11988 Report

Search the DGRC for BO11988

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:119
Well:88
Vector:pDNR-Dual
Associated Gene/TranscriptCG9588-RA
Protein status:BO11988.pep: validated full length
Sequenced Size:694

Clone Sequence Records

BO11988.3prime Sequence

692 bp (691 high quality bases) assembled on 2006-04-19

> BO11988.3prime
ATGGTCTAGAAAGCTTGCGTGATCCATCGCCTCGGGCGGCAGGACGATGT
TGCAGCCCAGGAGACCGCGTCCACTCCACGTTTTCGGCACCAGGATGAGG
TCCAACTGCTGCTCGCCGCGCTTCACTTTCAGCTGGACATTCTGGCTCTG
CATGTTGCGCACCAGCTCGCCAATCTGGGCGAGATCTCCCTTGAAGTTGC
CGCTATTGATGGAGCCAAAGCGGAGGATGGCATCGCCGGCACAGAGACCA
GCTCTTTCGGCGGGCGAATCGGGACTGACCAGATTGACCACCACGATGGC
GCGTGCAGGAGCAAGATCCGTGATATTAGCGCCACCGGGTGAACGGTCGC
TGTCCAGGTCCAAAGCGGAGGCGCGGTTCACCAGCTCCGGATCTGTGGTG
GCAATCTCGCTGTGATATTGGTTGAGCAGCGTCTGGATCTGGTTCATCAG
CTCCTTGTGGTCGTTCTGCAGGCAGATGATCGTCTGTCGCGCTAGGCGCA
CCTGGTAAACGTCGATGTCGTTGCGCGGAAAACCCTCGGCGTCCACCAGT
GGTCCACTCATGCCCACATTGTCGTTGGCGGCCAGGATCTGTCCGTTTCT
GTTGATCTGCGCCTCCAGCTGCTTTTTAGCGTTAATCAGACGCTCCAGGC
GCTCCTTGGTCGTCGTCCCAGCGGCCATGTCGACTGATAACT

BO11988.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:34:46
Subject Length Description Subject Range Query Range Score Percent Strand
CG9588-PA 663 CG9588-RA 1..660 678..19 3275 99.8 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 22:39:47
Subject Length Description Subject Range Query Range Score Percent Strand
CG9588-RA 1226 CG9588-RA 152..812 679..19 3290 99.8 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 22:39:41
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 13675800..13676127 249..576 1625 99.7 Plus
3R 32079331 3R 13675506..13675736 19..249 1155 100 Plus
3R 32079331 3R 13676428..13676530 577..679 515 100 Plus
Blast to na_te.dros performed on 2015-02-10 22:39:44 has no hits.

BO11988.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:22:41 Download gff for BO11988.3prime
Subject Subject Range Query Range Percent Splice Strand
CG9588-PA 1..663 16..678 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 04:52:56 Download gff for BO11988.3prime
Subject Subject Range Query Range Percent Splice Strand
CG9588-PA 1..663 16..678 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 19:57:29 Download gff for BO11988.3prime
Subject Subject Range Query Range Percent Splice Strand
CG9588-RA 149..812 19..685 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 00:04:05 Download gff for BO11988.3prime
Subject Subject Range Query Range Percent Splice Strand
CG9588-RA 149..812 19..685 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 00:04:05 Download gff for BO11988.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 13675506..13675736 19..249 100 <- Plus
3R 13675801..13676127 250..576 99 <- Plus
3R 13676428..13676533 577..685 97   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 19:57:29 Download gff for BO11988.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 9501228..9501458 19..249 100 <- Plus
arm_3R 9501523..9501849 250..576 99 <- Plus
arm_3R 9502150..9502255 577..685 97   Plus

BO11988.5prime Sequence

692 bp (691 high quality bases) assembled on 2006-04-19

> BO11988.5prime
GAAGTTATCAGTCGACATGGCCGCTGGGACGACGACCAAGGAGCGCCTGG
AGCGTCTGATTAACGCTAAAAAGCAGCTGGAGGCGCAGATCAACAGAAAC
GGACAGATCCTGGCCGCCAACGACAATGTGGGCATGAGTGGACCACTGGT
GGACGCCGAGGGTTTTCCGCGCAACGACATCGACGTTTACCAGGTGCGCC
TAGCGCGACAGACGATCATCTGCCTGCAGAACGACCACAAGGAGCTGATG
AACCAGATCCAGACGCTGCTCAACCAATATCACAGCGAGATTGCCACCAC
AGATCCGGAGCTGGTGAACCGCGCCTCCGCTTTGGACCTGGACAGCGACC
GTTCACCCGGTGGCGCTAATATCACGGATCTTGCTCCTGCACGCGCCATC
GTGGTGGTCAATCTGGTCAGTCCCGATTCGCCCGCCGAAAGAGCTGGTCT
CTGTGCCGGCGATGCCATCCTCCGCTTTGGCTCCATCAATAGCGGCAACT
TCAAGGGAGATCTCGCCCAGATTGGCGAGCTGGTGCGCAACATGCAGAGC
CAGAATGTCCAGCTGAAAGTGAAGCGCGGCGAGCAGCAGTTGGACCTCAT
CCTGGTGCCGAAAACGTGGAGTGGACGCGGTCTCCTGGGCTGCAACATCG
TCCTGCCGCCCGAGGCGATGGATCACGCAAGCTTTCTAGACC

BO11988.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:34:47
Subject Length Description Subject Range Query Range Score Percent Strand
CG9588-PA 663 CG9588-RA 1..660 17..676 3275 99.8 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 09:53:03
Subject Length Description Subject Range Query Range Score Percent Strand
CG9588-RA 1226 CG9588-RA 152..812 16..676 3290 99.8 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 09:53:00
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 13675800..13676127 446..119 1625 99.7 Minus
3R 32079331 3R 13675506..13675736 676..446 1155 100 Minus
3R 32079331 3R 13676428..13676530 118..16 515 100 Minus
Blast to na_te.dros performed on 2015-02-13 09:53:02 has no hits.

BO11988.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:22:43 Download gff for BO11988.5prime
Subject Subject Range Query Range Percent Splice Strand
CG9588-PA 1..663 17..679 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 04:52:57 Download gff for BO11988.5prime
Subject Subject Range Query Range Percent Splice Strand
CG9588-PA 1..663 17..679 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-02 11:47:20 Download gff for BO11988.5prime
Subject Subject Range Query Range Percent Splice Strand
CG9588-RA 149..812 10..676 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 14:25:46 Download gff for BO11988.5prime
Subject Subject Range Query Range Percent Splice Strand
CG9588-RA 149..812 10..676 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 14:25:46 Download gff for BO11988.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 13675506..13675736 446..676 100 <- Minus
3R 13675801..13676127 119..445 99 <- Minus
3R 13676428..13676533 10..118 97   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-02 11:47:20 Download gff for BO11988.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 9501228..9501458 446..676 100 <- Minus
arm_3R 9501523..9501849 119..445 99 <- Minus
arm_3R 9502150..9502255 10..118 97   Minus

BO11988.complete Sequence

694 bp assembled on 2006-10-11

GenBank Submission: FJ632270

> BO11988.complete
GAAGTTATCAGTCGACATGGCCGCTGGGACGACGACCAAGGAGCGCCTGG
AGCGTCTGATTAACGCTAAAAAGCAGCTGGAGGCGCAGATCAACAGAAAC
GGACAGATCCTGGCCGCCAACGACAATGTGGGCATGAGTGGACCACTGGT
GGACGCCGAGGGTTTTCCGCGCAACGACATCGACGTTTACCAGGTGCGCC
TAGCGCGACAGACGATCATCTGCCTGCAGAACGACCACAAGGAGCTGATG
AACCAGATCCAGACGCTGCTCAACCAATATCACAGCGAGATTGCCACCAC
AGATCCGGAGCTGGTGAACCGCGCCTCCGCTTTGGACCTGGACAGCGACC
GTTCACCCGGTGGCGCTAATATCACGGATCTTGCTCCTGCACGCGCCATC
GTGGTGGTCAATCTGGTCAGTCCCGATTCGCCCGCCGAAAGAGCTGGTCT
CTGTGCCGGCGATGCCATCCTCCGCTTTGGCTCCATCAATAGCGGCAACT
TCAAGGGAGATCTCGCCCAGATTGGCGAGCTGGTGCGCAACATGCAGAGC
CAGAATGTCCAGCTGAAAGTGAAGCGCGGCGAGCAGCAGTTGGACCTCAT
CCTGGTGCCGAAAACGTGGAGTGGACGCGGTCTCCTGGGCTGCAACATCG
TCCTGCCGCCCGAGGCGATGGATCACGCAAGCTTTCTAGACCAT

BO11988.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 16:04:59
Subject Length Description Subject Range Query Range Score Percent Strand
CG9588-RA 663 CG9588-PA 1..660 17..676 3285 99.8 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:05:00
Subject Length Description Subject Range Query Range Score Percent Strand
CG9588-RA 1226 CG9588-RA 152..812 16..676 3290 99.8 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 16:04:57
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 13675800..13676127 446..119 1625 99.7 Minus
3R 32079331 3R 13675506..13675736 676..446 1155 100 Minus
3R 32079331 3R 13676428..13676530 118..16 515 100 Minus
Blast to na_te.dros performed on 2014-11-27 16:04:58 has no hits.

BO11988.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:11:17 Download gff for BO11988.complete
Subject Subject Range Query Range Percent Splice Strand
CG9588-RA 1..663 17..679 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:29:25 Download gff for BO11988.complete
Subject Subject Range Query Range Percent Splice Strand
CG9588-RA 145..808 10..676 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:50:16 Download gff for BO11988.complete
Subject Subject Range Query Range Percent Splice Strand
CG9588-RA 153..812 17..678 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:11:17 Download gff for BO11988.complete
Subject Subject Range Query Range Percent Splice Strand
CG9588-RA 145..808 10..676 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 17:10:01 Download gff for BO11988.complete
Subject Subject Range Query Range Percent Splice Strand
CG9588-RA 153..812 17..678 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 17:10:01 Download gff for BO11988.complete
Subject Subject Range Query Range Percent Splice Strand
3R 13675503..13675736 446..678 99 <- Minus
3R 13675801..13676127 119..445 99 <- Minus
3R 13676428..13676529 17..118 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:50:16 Download gff for BO11988.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 9501225..9501458 446..678 99 <- Minus
arm_3R 9501523..9501849 119..445 99 <- Minus
arm_3R 9502150..9502251 17..118 100   Minus

BO11988.pep Sequence

Translation from 16 to 694

> BO11988.pep
MAAGTTTKERLERLINAKKQLEAQINRNGQILAANDNVGMSGPLVDAEGF
PRNDIDVYQVRLARQTIICLQNDHKELMNQIQTLLNQYHSEIATTDPELV
NRASALDLDSDRSPGGANITDLAPARAIVVVNLVSPDSPAERAGLCAGDA
ILRFGSINSGNFKGDLAQIGELVRNMQSQNVQLKVKRGEQQLDLILVPKT
WSGRGLLGCNIVLPPEAMDHASFLDH

BO11988.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 00:36:15
Subject Length Description Subject Range Query Range Score Percent Strand
CG9588-PA 220 CG9588-PA 1..220 1..220 1116 100 Plus