Clone Sequence Records
BO11990.3prime Sequence
881 bp (830 high quality bases) assembled on 2006-04-19
> BO11990.3prime
ATGGTCTAGAAAGCTTGCCAACCAGACGAGAAATCCCCAGATCAGAACCG
CCAACGTAAGTCCGATCTGCAGGCCCAAAGTTAAAGTAAGGGCAAAGTAG
AGAACGGCGAAGATGACCACATAGCCCGCGTAGTACAGGACGTTAAAGAC
CTTCCAGTAGTTGCGATGCCAATCCGTGGTCACTGCCGACTCCTTGAAGT
AGAAACGCCGGATTCCTATCAGACACCGATCGATGAACTCCGACCAATCG
CACTGACTGGCATCGAAATTATAGCGCCTTCGATCGCTCTCCGGTATTAA
TGCCGATATACGCAGCGCATTCTTCAAGGAATACCGGAAGTCCTTGTCCA
GGAAGTAATCAAAGGCCTTGGTACCTTTCTGGAACACCCGCATGTACTCG
TAGGCTGTGTGCTGGGGCATTCCGATTCCGAATAGCTTCTCTGGTATGAT
AAAGACCATAGCTGGCAGCAAATGAAACAGATAGAAGAACAGATTGTAAC
GCCATCCGTTGCGCAATTTCGTCACCGGTTTCCAAACAAAACTGTTCGGC
GGATGCCGCTCCACACTATCGTTGATGATCGTGCAGAACTCGGCGAGATT
CAGAGGATTAACCTCTCCCGACGTGCAATGTATGATCTCCGGCTGCTCCA
ACTTCCGGGTGCCCACGTACCAGCCCATAACCAGTGATGAGTTGATCACA
TAGTCGCATGGTATGATGTCGATCACAGCATTTGCATTCCCGCACATGGT
GCGAAAAATTCCCTTCACGAAGCCGGCCAAGAAGCCCAGGTGACCAGAGT
TTGCATTGCCCACCCAGCCCTTCATCGGGTGCTCCAGGTTTCATAAACAA
TCGATGGCCTAACTATGGCTGCTGGCAGTCC
BO11990.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:34:49
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG8303-PA | 1632 | CG8303-RA | 810..1629 | 838..19 | 4100 | 100 | Minus |
| CG8303-PA | 1632 | CG8303-RA | 766..805 | 881..842 | 200 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-03 17:37:07
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG8303-RD | 2176 | CG8303-RD | 918..1781 | 881..19 | 4280 | 99.8 | Minus |
| CG8303-RC | 2200 | CG8303-RC | 942..1805 | 881..19 | 4280 | 99.8 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-03 17:36:58
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 16595941..16596376 | 407..842 | 2165 | 99.8 | Plus |
| 2R | 25286936 | 2R | 16595623..16595880 | 149..406 | 1290 | 100 | Plus |
| 2R | 25286936 | 2R | 16595423..16595552 | 19..148 | 650 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-03 17:37:03 has no hits.
BO11990.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:22:46 Download gff for
BO11990.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8303-PA | 766..1632 | 18..881 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 04:53:02 Download gff for
BO11990.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8303-PA | 766..1632 | 18..881 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-09 05:36:29 Download gff for
BO11990.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8303-RC | 942..1805 | 19..881 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-03 19:03:09 Download gff for
BO11990.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8303-RC | 942..1805 | 19..881 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-03 19:03:09 Download gff for
BO11990.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 16595623..16595880 | 149..406 | 100 | <- | Plus |
| 2R | 16595423..16595552 | 19..148 | 100 | <- | Plus |
| 2R | 16595941..16596382 | 407..847 | 99 | <- | Plus |
| 2R | 16596436..16596469 | 848..881 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-09 05:36:29 Download gff for
BO11990.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 12483941..12483974 | 848..881 | 100 | | Plus |
| arm_2R | 12482928..12483057 | 19..148 | 100 | <- | Plus |
| arm_2R | 12483128..12483385 | 149..406 | 100 | <- | Plus |
| arm_2R | 12483446..12483887 | 407..847 | 99 | <- | Plus |
BO11990.5prime Sequence
918 bp (756 high quality bases) assembled on 2006-04-19
> BO11990.5prime
GAAGTTATCAGTCGACATGGCTGTCATCACGGAACATGGCGGCACCACCT
CCTCTCCCCCGGAAAACAACAATAGCATCGGAAACGGAAAACACCGGGTC
AATGGCCATCAGTTGAGCACCTCGCTGACCATACCGGAGTTCTTTGCCCA
CAAGAACATCTTTGTCACCGGCGGCACTGGATTCCTGGGCACCGTTCTTA
TCGAGGCTCTGCTGGACACACATCCCGACATTGGAACCATCTACGTTTTG
GTCCGGGGCAAGCGCAAGTTTGATCCGAACGAGCGGATTCGTCGCCTGCT
CCAAAAGCCGATTTTCGAGAAATACTCGGAGAAGACTCTGTCCAAGGTGG
TCCCAGTGGTTGGCGAACTGAGCGAACCAAACTTTGGCTTTGGCCCCGAG
CTCCTGCAGGAGCTGATCGATCGGGTCAATGTGATCTACCACAGTGCAGC
CACCATCAAGTTCAGCTCCCCGCTGCGCACCGCCATTCGCACCAATCTCA
CGGGAACGATGCGCACCATTGAGCTGGCCAAACAATTGAAGCAACTGGCG
GCGTACATCTATTGCTCCACGGCCTTCTGCAATAGCAACAATCGTGGTCT
GATTGCCGAGGAGGTGTACAAGTCACAGTTCGATCCGTACGAGATGATGA
AGATGGCCGAAGATGACTCCGCCTGGGAGGATTTCACCGATCAAAAGTGC
AAGGGCTATATCCGTGATCATCCCAATACGTATACGTTCACCAAGAATCT
GTCGGAGAATTTGCTGATGGCCGAGATGTCGGGACTGCCAGCAGCCATAG
TTAGGCCATCGATTGTTTATGGAACCCTGGAGCACCCGATGAAGGGCTGG
GTGGGCAATGCAAACTCTGGGCACCTGGGCTTCTTTGGCGGCTTCGTGAA
GGGGATTTTTCGCACCAT
BO11990.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:34:50
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG8303-PA | 1632 | CG8303-RA | 1..902 | 17..918 | 4410 | 99.5 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 11:00:31
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG8303-RD | 2176 | CG8303-RD | 152..1054 | 16..918 | 4455 | 99.6 | Plus |
| CG8303-RC | 2200 | CG8303-RC | 176..1078 | 16..918 | 4455 | 99.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 11:00:27
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 16596436..16596941 | 815..310 | 2530 | 100 | Minus |
| 2R | 25286936 | 2R | 16597904..16598198 | 310..16 | 1475 | 100 | Minus |
| 2R | 25286936 | 2R | 16596280..16596383 | 918..815 | 460 | 96.2 | Minus |
Blast to na_te.dros performed on 2015-02-11 11:00:29 has no hits.
BO11990.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:22:47 Download gff for
BO11990.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8303-PA | 1..902 | 17..918 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 04:53:03 Download gff for
BO11990.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8303-PA | 1..902 | 17..918 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-24 16:41:08 Download gff for
BO11990.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8303-RC | 173..1078 | 9..918 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 12:38:09 Download gff for
BO11990.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8303-RC | 173..1078 | 9..918 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 12:38:09 Download gff for
BO11990.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 16596280..16596382 | 816..918 | 96 | <- | Minus |
| 2R | 16596436..16596940 | 311..815 | 100 | <- | Minus |
| 2R | 16597904..16598201 | 9..310 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 16:41:08 Download gff for
BO11990.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 12483785..12483887 | 816..918 | 96 | <- | Minus |
| arm_2R | 12483941..12484445 | 311..815 | 100 | <- | Minus |
| arm_2R | 12485409..12485706 | 9..310 | 98 | | Minus |
BO11990.complete Sequence
1663 bp assembled on 2006-10-11
GenBank Submission: FJ632272
> BO11990.complete
GAAGTTATCAGTCGACATGGCTGTCATCACGGAACATGGCGGCACCACCT
CCTCTCCCCCGGAAAACAACAATAGCATCGGAAACGGAAAACACCGGGTC
AATGGCCATCAGTTGAGCACCTCGCTGACCATACCGGAGTTCTTTGCCCA
CAAGAACATCTTTGTCACCGGCGGCACTGGATTCCTGGGCACCGTTCTTA
TCGAGGCTCTGCTGGACACACATCCCGACATTGGAACCATCTACGTTTTG
GTCCGGGGCAAGCGCAAGTTTGATCCGAACGAGCGGATTCGTCGCCTGCT
CCAAAAGCCGATTTTCGAGAAATACTCGGAGAAGACTCTGTCCAAGGTGG
TCCCAGTGGTTGGCGAACTGAGCGAACCAAACTTTGGCTTTGGCCCCGAG
CTCCTGCAGGAGCTGATCGATCGGGTCAATGTGATCTACCACAGTGCAGC
CACCATCAAGTTCAGCTCCCCGCTGCGCACCGCCATTCGCACCAATCTCA
CGGGAACGATGCGCACCATTGAGCTGGCCAAACAATTGAAGCAACTGGCG
GCGTACATCTATTGCTCCACGGCCTTCTGCAATAGCAACAATCGTGGTCT
GATTGCCGAGGAGGTGTACAAGTCACAGTTCGATCCGTACGAGATGATGA
AGATGGCCGAAGATGACTCCGCCTGGGAGGATTTCACCGATCAAAAGTGC
AAGGGCTATATCCGTGATCATCCCAATACGTATACGTTCACCAAGAATCT
GTCGGAGAATTTGCTGATGGCCGAGATGTCGGGACTGCCAGCAGCCATAG
TTAGGCCATCGATTGTTTATGGAACCCTGGAGCACCCGATGAAGGGCTGG
GTGGGCAATGCAAACTCTGGTCACCTGGGCTTCTTGGCCGGCTTCGTGAA
GGGAATTTTTCGCACCATGTGCGGGAATGCAAATGCTGTGATCGACATCA
TACCATGCGACTATGTGATCAACTCATCACTGGTTATGGGCTGGTACGTG
GGCACCCGGAAGTTGGAGCAGCCGGAGATCATACATTGCACGTCGGGAGA
GGTTAATCCTCTGAATCTCGCCGAGTTCTGCACGATCATCAACGATAGTG
TGGAGCGGCATCCGCCGAACAGTTTTGTTTGGAAACCGGTGACGAAATTG
CGCAACGGATGGCGTTACAATCTGTTCTTCTATCTGTTTCATTTGCTGCC
AGCTATGGTCTTTATCATACCAGAGAAGCTATTCGGAATCGGAATGCCCC
AGCACACAGCCTACGAGTACATGCGGGTGTTCCAGAAAGGTACCAAGGCC
TTTGATTACTTCCTGGACAAGGACTTCCGGTATTCCTTGAAGAATGCGCT
GCGTATATCGGCATTAATACCGGAGAGCGATCGAAGGCGCTATAATTTCG
ATGCCAGTCAGTGCGATTGGTCGGAGTTCATCGATCGGTGTCTGATAGGA
ATCCGGCGTTTCTACTTCAAGGAGTCGGCAGTGACCACGGATTGGCATCG
CAACTACTGGAAGGTCTTTAACGTCCTGTACTACGCGGGCTATGTGGTCA
TCTTCGCCGTTCTCTACTTTGCCCTTACTTTAACTTTGGGCCTGCAGATC
GGACTTACGTTGGCGGTTCTGATCTGGGGATTTCTCGTCTGGTTGGCAAG
CTTTCTAGACCAT
BO11990.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 14:58:11
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG8303-RD | 1632 | CG8303-PD | 1..1629 | 17..1645 | 8145 | 100 | Plus |
| CG8303-RC | 1632 | CG8303-PC | 1..1629 | 17..1645 | 8145 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:58:13
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG8303-RD | 2176 | CG8303-RD | 152..1781 | 16..1645 | 8150 | 100 | Plus |
| CG8303-RC | 2200 | CG8303-RC | 176..1805 | 16..1645 | 8150 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 14:58:09
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 16596436..16596941 | 815..310 | 2530 | 100 | Minus |
| 2R | 25286936 | 2R | 16595941..16596383 | 1257..815 | 2215 | 100 | Minus |
| 2R | 25286936 | 2R | 16597904..16598198 | 310..16 | 1475 | 100 | Minus |
| 2R | 25286936 | 2R | 16595623..16595880 | 1515..1258 | 1290 | 100 | Minus |
| 2R | 25286936 | 2R | 16595423..16595552 | 1645..1516 | 650 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 14:58:10 has no hits.
BO11990.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:30:33 Download gff for
BO11990.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8303-RB | 228..1863 | 9..1646 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:48:48 Download gff for
BO11990.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8303-RB | 228..1860 | 9..1645 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:35:25 Download gff for
BO11990.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8303-RC | 177..1805 | 17..1647 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:30:34 Download gff for
BO11990.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8303-RB | 228..1860 | 9..1645 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:56:59 Download gff for
BO11990.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8303-RC | 177..1805 | 17..1647 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 15:56:59 Download gff for
BO11990.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 16595421..16595552 | 1516..1647 | 98 | <- | Minus |
| 2R | 16595623..16595880 | 1258..1515 | 100 | <- | Minus |
| 2R | 16595941..16596382 | 816..1257 | 100 | <- | Minus |
| 2R | 16596436..16596940 | 311..815 | 100 | <- | Minus |
| 2R | 16597904..16598197 | 17..310 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:35:25 Download gff for
BO11990.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 12482926..12483057 | 1516..1647 | 98 | <- | Minus |
| arm_2R | 12483128..12483385 | 1258..1515 | 100 | <- | Minus |
| arm_2R | 12483446..12483887 | 816..1257 | 100 | <- | Minus |
| arm_2R | 12483941..12484445 | 311..815 | 100 | <- | Minus |
| arm_2R | 12485409..12485702 | 17..310 | 100 | | Minus |
BO11990.pep Sequence
Translation from 16 to 1663
> BO11990.pep
MAVITEHGGTTSSPPENNNSIGNGKHRVNGHQLSTSLTIPEFFAHKNIFV
TGGTGFLGTVLIEALLDTHPDIGTIYVLVRGKRKFDPNERIRRLLQKPIF
EKYSEKTLSKVVPVVGELSEPNFGFGPELLQELIDRVNVIYHSAATIKFS
SPLRTAIRTNLTGTMRTIELAKQLKQLAAYIYCSTAFCNSNNRGLIAEEV
YKSQFDPYEMMKMAEDDSAWEDFTDQKCKGYIRDHPNTYTFTKNLSENLL
MAEMSGLPAAIVRPSIVYGTLEHPMKGWVGNANSGHLGFLAGFVKGIFRT
MCGNANAVIDIIPCDYVINSSLVMGWYVGTRKLEQPEIIHCTSGEVNPLN
LAEFCTIINDSVERHPPNSFVWKPVTKLRNGWRYNLFFYLFHLLPAMVFI
IPEKLFGIGMPQHTAYEYMRVFQKGTKAFDYFLDKDFRYSLKNALRISAL
IPESDRRRYNFDASQCDWSEFIDRCLIGIRRFYFKESAVTTDWHRNYWKV
FNVLYYAGYVVIFAVLYFALTLTLGLQIGLTLAVLIWGFLVWLASFLDH
BO11990.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:46:48
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG8303-PD | 543 | CG8303-PD | 1..543 | 1..543 | 2889 | 100 | Plus |
| CG8303-PC | 543 | CG8303-PC | 1..543 | 1..543 | 2889 | 100 | Plus |
| CG5065-PE | 625 | CG5065-PE | 119..563 | 39..486 | 725 | 35.5 | Plus |
| CG5065-PD | 625 | CG5065-PD | 119..563 | 39..486 | 725 | 35.5 | Plus |
| CG5065-PC | 625 | CG5065-PC | 119..563 | 39..486 | 725 | 35.5 | Plus |
