Clone Sequence Records
BO11994.3prime Sequence
868 bp (792 high quality bases) assembled on 2006-04-19
> BO11994.3prime
ATGGTCTAGAAAGCTTGCCCGTGCAGTCAATGCAATTTTCTCCAGCTGCG
TTGCGGATTTTCCGTGACTCGTCCTGCGATTTTCCTCCTTGCGGCCAGCC
AGCAACTCTCTCGCCTGCTGAGTTTCTTTCGTTATCCCAATCCCTCCAGG
CGCTGTCCGATCCATGGATATTTTATCTGTATCTATATCTCTCGTGATTC
CCTGCGCCAGGGTTGCCATCACCATCACCGCCAGCGCCACCGGAAGGAGG
ACGAGTGGCGTGATTGGTGTGGAGGGCGCTGAAGCCGTGGAACTGGCTGC
ATTTGGTTGGACGAACAAGAGCGATAAGATTTTGGTCACAAATAATTCCC
GGTAAGACGTACCTTGGACGGGATCGGCGCGTGAGTTGCTGGCGTAGACC
GTTTCCCGGGACTCGAGCACCGGCGCCTTCTGCGGCCGGTCGCCCTCCAC
GGACTCCTCGTTGCACCTCCAGTACACGGTCGACAATTCGGCTATGCACT
TTAGTTTCATGTTGCCTTTGCGAAAGTGTTTCTGTTCCACCCGGAATTGA
AGGCCCAGCACAGAAGTTTCTAGACCATCTCGTCCCGATACAATTGTGTC
GTATTTGCGGAGTTTCTGCTGCTCAACTGGCTCTCCATTCACTTGCCAGG
ATAGTTTCACAGCAGGCTTGGAACGTCCTGCGGTGCAATTAACCCGAACA
TAGTCTCCGATTTGGTAACGCGGTCGTCCACCGCTGATTTTCGGTGATCC
TTCGTCCGGAAGATACGCAACAAATCATGTCGCCGTGCTCGGTGACCGTT
TGGAAGGAGGGTGCCTCACCAGAAACTTCGCACCGGAAGCGGCCCGCCGA
CTGCAGATTGACGTTGCG
BO11994.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:34:55
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG15138-PA | 1152 | beat-IIIc-RA | 395..1149 | 773..19 | 3775 | 100 | Minus |
CG15138-PB | 1086 | beat-IIIc-RB | 395..805 | 773..363 | 2055 | 100 | Minus |
CG15138-PB | 1086 | beat-IIIc-RB | 804..1083 | 298..19 | 1400 | 100 | Minus |
CG15138-PA | 1152 | beat-IIIc-RA | 301..396 | 868..773 | 480 | 100 | Minus |
CG15138-PB | 1086 | beat-IIIc-RB | 301..396 | 868..773 | 480 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 11:55:00
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
beat-IIIc-RA | 1709 | CG15138-RA | 738..1586 | 868..19 | 4225 | 99.9 | Minus |
beat-IIIc-RB | 3836 | CG15138-RB | 738..1242 | 868..363 | 2505 | 99.8 | Minus |
beat-IIIc-RB | 3836 | CG15138-RB | 1241..1520 | 298..19 | 1400 | 100 | Minus |
beat-IIIb-RD | 3249 | CG33179-RD | 1759..1878 | 516..397 | 195 | 77.5 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 11:54:51
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 17189953..17190434 | 19..500 | 2410 | 100 | Plus |
2L | 23513712 | 2L | 17190834..17191099 | 499..764 | 1330 | 100 | Plus |
2L | 23513712 | 2L | 17193532..17193627 | 773..868 | 480 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-12 11:54:55 has no hits.
BO11994.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:22:54 Download gff for
BO11994.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG15138-PA | 301..1152 | 18..868 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 04:53:13 Download gff for
BO11994.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG15138-PA | 301..1152 | 18..868 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 10:30:02 Download gff for
BO11994.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
beat-IIIc-RA | 738..1591 | 12..868 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 14:11:25 Download gff for
BO11994.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
beat-IIIc-RA | 738..1591 | 12..868 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 14:11:25 Download gff for
BO11994.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 17190834..17191099 | 499..764 | 100 | <- | Plus |
2L | 17193525..17193627 | 765..868 | 99 | | Plus |
2L | 17189948..17190432 | 12..498 | 99 | <- | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 10:30:02 Download gff for
BO11994.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 17189948..17190432 | 12..498 | 99 | <- | Plus |
arm_2L | 17190834..17191099 | 499..764 | 100 | <- | Plus |
arm_2L | 17193525..17193627 | 765..868 | 99 | | Plus |
BO11994.5prime Sequence
834 bp (746 high quality bases) assembled on 2006-04-19
> BO11994.5prime
GAAGTTATCAGTCGACATGTTTGGCCATCTCAGTTTGCTGGCCGCTCTGT
TTTTCATCGGCACATTGAAAGATTTCCGCGTTGCTGGGCTGAGACTGACC
GAGGTTCGCATTCCGATGTACGTGATTAAGGGTACCGCGGCGCAGTTGGA
GTGTCTTTACGATCTGGATGGCGAGGCCCTCTACTCCGTGAAATGGTACA
AGGATGGCAACGAGTTCTACCGCTATGTGCCGAGGGATATGCCGCCTGCC
CAAACGTTCCTGCTGCCTGGTGTTAACGTCGATTTACACAACTCGAGCGA
CGCGATTGTTACGCTGCGCAACGTCAATCTGCAGTCGGCGGGCCGCTTCC
GGTGCGAAGTTTCTGGTGAGGCACCCTCCTTCCAAACGGTCACCGAGCAC
GGCGACATGATTGTTGCGTATCTTCCGGACGAAGGATCACCGAAAATCAG
CGGTGGACGACCGCGTTACCAAATCGGAGACTATGTTCGGGTTAATTGCA
CCGCAGGACGTTCCAAGCCTGCTGTGAAACTATCCTGGCAAGTGAATGGA
GAGCCAGTTGAGCAGCAGAAACTCCGCAAATACGACACAATTGTATCGGG
ACGAGATGGTCTAGAAACTTCTGTGCTGGGCCTTCAATTCCGGGTGGAAC
AGAAACACTTTCGCAAAGGCAACATGAAACTAAAGTGCATAGCCGAATTG
TCGACCGTGTACTGGAGGTGCAACGAGGAGTCCGTGGAGGGCGACCGGCC
GCAGAAGGCGCCGGTGCTCGAGTCCCGGGAAACGGTCTACGCCAGCAACT
CACGCGCCGATCCCGTCCAGGTACGTCTTACCGG
BO11994.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:34:55
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG15138-PA | 1152 | beat-IIIc-RA | 1..803 | 17..819 | 3990 | 99.8 | Plus |
CG15138-PB | 1086 | beat-IIIc-RB | 1..803 | 17..819 | 3990 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 01:51:21
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
beat-IIIc-RA | 1709 | CG15138-RA | 436..1256 | 15..834 | 4065 | 99.8 | Plus |
beat-IIIc-RB | 3836 | CG15138-RB | 436..1240 | 15..819 | 4010 | 99.9 | Plus |
beat-IIIb-RD | 3249 | CG33179-RD | 1254..1510 | 160..416 | 310 | 74.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 01:51:15
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 17190834..17191099 | 685..420 | 1330 | 100 | Minus |
2L | 23513712 | 2L | 17196875..17197088 | 283..70 | 1070 | 100 | Minus |
2L | 23513712 | 2L | 17190283..17190434 | 834..684 | 710 | 99.3 | Minus |
2L | 23513712 | 2L | 17193525..17193660 | 419..284 | 680 | 100 | Minus |
2L | 23513712 | 2L | 17251509..17251565 | 71..15 | 270 | 98.2 | Minus |
2L | 23513712 | 2L | 16984695..16984781 | 160..246 | 240 | 85.1 | Plus |
Blast to na_te.dros performed on 2015-02-13 01:51:19 has no hits.
BO11994.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:22:55 Download gff for
BO11994.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG15138-PA | 1..819 | 17..834 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 04:53:15 Download gff for
BO11994.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG15138-PB | 1..803 | 17..819 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 11:14:44 Download gff for
BO11994.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
beat-IIIc-RA | 430..1256 | 9..834 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 03:18:07 Download gff for
BO11994.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
beat-IIIc-RA | 430..1256 | 9..834 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 03:18:07 Download gff for
BO11994.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 17196875..17197086 | 72..283 | 100 | <- | Minus |
2L | 17251509..17251571 | 9..71 | 95 | | Minus |
2L | 17190283..17190432 | 686..834 | 99 | <- | Minus |
2L | 17190834..17191099 | 420..685 | 100 | <- | Minus |
2L | 17193525..17193660 | 284..419 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 11:14:44 Download gff for
BO11994.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 17190283..17190432 | 686..834 | 99 | <- | Minus |
arm_2L | 17190834..17191099 | 420..685 | 100 | <- | Minus |
arm_2L | 17193525..17193660 | 284..419 | 100 | <- | Minus |
arm_2L | 17196875..17197086 | 72..283 | 100 | <- | Minus |
arm_2L | 17251509..17251571 | 9..71 | 95 | | Minus |
BO11994.complete Sequence
1183 bp assembled on 2006-10-11
GenBank Submission: FJ632273
> BO11994.complete
GAAGTTATCAGTCGACATGTTTGGCCATCTCAGTTTGCTGGCCGCTCTGT
TTTTCATCGGCACATTGAAAGATTTCCGCGTTGCTGGGCTGAGACTGACC
GAGGTTCGCATTCCGATGTACGTGATTAAGGGTACCGCGGCGCAGTTGGA
GTGTCTTTACGATCTGGATGGCGAGGCCCTCTACTCCGTGAAATGGTACA
AGGATGGCAACGAGTTCTACCGCTATGTGCCGAGGGATATGCCGCCTGCC
CAAACGTTCCTGCTGCCTGGTGTTAACGTCGATTTACACAACTCGAGCGA
CGCGATTGTTACGCTGCGCAACGTCAATCTGCAGTCGGCGGGCCGCTTCC
GGTGCGAAGTTTCTGGTGAGGCACCCTCCTTCCAAACGGTCACCGAGCAC
GGCGACATGATTGTTGCGTATCTTCCGGACGAAGGATCACCGAAAATCAG
CGGTGGACGACCGCGTTACCAAATCGGAGACTATGTTCGGGTTAATTGCA
CCGCAGGACGTTCCAAGCCTGCTGTGAAACTATCCTGGCAAGTGAATGGA
GAGCCAGTTGAGCAGCAGAAACTCCGCAAATACGACACAATTGTATCGGG
ACGAGATGGTCTAGAAACTTCTGTGCTGGGCCTTCAATTCCGGGTGGAAC
AGAAACACTTTCGCAAAGGCAACATGAAACTAAAGTGCATAGCCGAATTG
TCGACCGTGTACTGGAGGTGCAACGAGGAGTCCGTGGAGGGCGACCGGCC
GCAGAAGGCGCCGGTGCTCGAGTCCCGGGAAACGGTCTACGCCAGCAACT
CACGCGCCGATCCCGTCCAAGGTACGTCTTACCGGGAATTATTTGTGACC
AAAATCTTATCGCTCTTGTTCGTCCAACCAAATGCAGCCAGTTCCACGGC
TTCAGCGCCCTCCACACCAATCACGCCACTCGTCCTCCTTCCGGTGGCGC
TGGCGGTGATGGTGATGGCAACCCTGGCGCAGGGAATCACGAGAGATATA
GATACAGATAAAATATCCATGGATCGGACAGCGCCTGGAGGGATTGGGAT
AACGAAAGAAACTCAGCAGGCGAGAGAGTTGCTGGCTGGCCGCAAGGAGG
AAAATCGCAGGACGAGTCACGGAAAATCCGCAACGCAGCTGGAGAAAATT
GCATTGACTGCACGGGCAAGCTTTCTAGACCAT
BO11994.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 08:25:01
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
beat-IIIc-RA | 1152 | CG15138-PA | 1..1149 | 17..1165 | 5730 | 99.9 | Plus |
beat-IIIc-RB | 1086 | CG15138-PB | 1..805 | 17..821 | 4010 | 99.9 | Plus |
beat-IIIc-RB | 1086 | CG15138-PB | 804..1083 | 886..1165 | 1400 | 100 | Plus |
beat-IIIb-RD | 1215 | CG33179-PD | 162..418 | 160..416 | 310 | 74.7 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 08:25:03
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
beat-IIIc-RA | 1709 | CG15138-RA | 436..1586 | 15..1165 | 5740 | 99.9 | Plus |
beat-IIIc-RB | 3836 | CG15138-RB | 436..1242 | 15..821 | 4020 | 99.9 | Plus |
beat-IIIc-RB | 3836 | CG15138-RB | 1241..1520 | 886..1165 | 1400 | 100 | Plus |
beat-IIIb-RD | 3249 | CG33179-RD | 1254..1510 | 160..416 | 310 | 74.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 08:25:00
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 17189953..17190434 | 1165..684 | 2410 | 100 | Minus |
2L | 23513712 | 2L | 17190834..17191099 | 685..420 | 1330 | 100 | Minus |
2L | 23513712 | 2L | 17196875..17197088 | 283..70 | 1070 | 100 | Minus |
2L | 23513712 | 2L | 17193525..17193660 | 419..284 | 680 | 100 | Minus |
2L | 23513712 | 2L | 17251509..17251565 | 71..15 | 270 | 98.2 | Minus |
2L | 23513712 | 2L | 16984695..16984781 | 160..246 | 240 | 85.1 | Plus |
Blast to na_te.dros performed on 2014-11-28 08:25:00 has no hits.
BO11994.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:31:27 Download gff for
BO11994.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
beat-IIIc-RA | 1..1152 | 17..1166 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-07-28 16:51:19 Download gff for
BO11994.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
beat-IIIc-RA | 442..1584 | 23..1167 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:20:26 Download gff for
BO11994.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
beat-IIIc-RA | 444..1586 | 23..1167 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:31:27 Download gff for
BO11994.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
beat-IIIc-RA | 428..1589 | 9..1172 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 09:17:45 Download gff for
BO11994.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
beat-IIIc-RA | 444..1586 | 23..1167 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 09:17:45 Download gff for
BO11994.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 17196875..17197086 | 72..283 | 100 | <- | Minus |
2L | 17251509..17251557 | 23..71 | 97 | | Minus |
2L | 17193525..17193660 | 284..419 | 100 | <- | Minus |
2L | 17190834..17191099 | 420..685 | 100 | <- | Minus |
2L | 17189949..17190432 | 686..1167 | 99 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:20:26 Download gff for
BO11994.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 17196875..17197086 | 72..283 | 100 | <- | Minus |
arm_2L | 17251509..17251557 | 23..71 | 97 | | Minus |
arm_2L | 17189949..17190432 | 686..1167 | 99 | <- | Minus |
arm_2L | 17190834..17191099 | 420..685 | 100 | <- | Minus |
arm_2L | 17193525..17193660 | 284..419 | 100 | <- | Minus |
BO11994.pep Sequence
Translation from 16 to 1183
> BO11994.pep
MFGHLSLLAALFFIGTLKDFRVAGLRLTEVRIPMYVIKGTAAQLECLYDL
DGEALYSVKWYKDGNEFYRYVPRDMPPAQTFLLPGVNVDLHNSSDAIVTL
RNVNLQSAGRFRCEVSGEAPSFQTVTEHGDMIVAYLPDEGSPKISGGRPR
YQIGDYVRVNCTAGRSKPAVKLSWQVNGEPVEQQKLRKYDTIVSGRDGLE
TSVLGLQFRVEQKHFRKGNMKLKCIAELSTVYWRCNEESVEGDRPQKAPV
LESRETVYASNSRADPVQGTSYRELFVTKILSLLFVQPNAASSTASAPST
PITPLVLLPVALAVMVMATLAQGITRDIDTDKISMDRTAPGGIGITKETQ
QARELLAGRKEENRRTSHGKSATQLEKIALTARASFLDH
BO11994.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 23:55:07
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
beat-IIIc-PA | 383 | CG15138-PA | 1..383 | 1..383 | 1960 | 100 | Plus |
beat-IIIc-PB | 361 | CG15138-PB | 1..361 | 1..383 | 1819 | 94.3 | Plus |
beat-IIIb-PD | 404 | CG33179-PD | 31..295 | 25..297 | 788 | 55.3 | Plus |
beat-IIIa-PE | 343 | CG12621-PE | 70..308 | 23..262 | 774 | 60.8 | Plus |
beat-IIIa-PD | 343 | CG12621-PD | 70..308 | 23..262 | 774 | 60.8 | Plus |