Clone BO11994 Report

Search the DGRC for BO11994

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:119
Well:94
Vector:pDNR-Dual
Associated Gene/Transcriptbeat-IIIc-RA
Protein status:BO11994.pep: validated full length
Sequenced Size:1183

Clone Sequence Records

BO11994.3prime Sequence

868 bp (792 high quality bases) assembled on 2006-04-19

> BO11994.3prime
ATGGTCTAGAAAGCTTGCCCGTGCAGTCAATGCAATTTTCTCCAGCTGCG
TTGCGGATTTTCCGTGACTCGTCCTGCGATTTTCCTCCTTGCGGCCAGCC
AGCAACTCTCTCGCCTGCTGAGTTTCTTTCGTTATCCCAATCCCTCCAGG
CGCTGTCCGATCCATGGATATTTTATCTGTATCTATATCTCTCGTGATTC
CCTGCGCCAGGGTTGCCATCACCATCACCGCCAGCGCCACCGGAAGGAGG
ACGAGTGGCGTGATTGGTGTGGAGGGCGCTGAAGCCGTGGAACTGGCTGC
ATTTGGTTGGACGAACAAGAGCGATAAGATTTTGGTCACAAATAATTCCC
GGTAAGACGTACCTTGGACGGGATCGGCGCGTGAGTTGCTGGCGTAGACC
GTTTCCCGGGACTCGAGCACCGGCGCCTTCTGCGGCCGGTCGCCCTCCAC
GGACTCCTCGTTGCACCTCCAGTACACGGTCGACAATTCGGCTATGCACT
TTAGTTTCATGTTGCCTTTGCGAAAGTGTTTCTGTTCCACCCGGAATTGA
AGGCCCAGCACAGAAGTTTCTAGACCATCTCGTCCCGATACAATTGTGTC
GTATTTGCGGAGTTTCTGCTGCTCAACTGGCTCTCCATTCACTTGCCAGG
ATAGTTTCACAGCAGGCTTGGAACGTCCTGCGGTGCAATTAACCCGAACA
TAGTCTCCGATTTGGTAACGCGGTCGTCCACCGCTGATTTTCGGTGATCC
TTCGTCCGGAAGATACGCAACAAATCATGTCGCCGTGCTCGGTGACCGTT
TGGAAGGAGGGTGCCTCACCAGAAACTTCGCACCGGAAGCGGCCCGCCGA
CTGCAGATTGACGTTGCG

BO11994.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:34:55
Subject Length Description Subject Range Query Range Score Percent Strand
CG15138-PA 1152 beat-IIIc-RA 395..1149 773..19 3775 100 Minus
CG15138-PB 1086 beat-IIIc-RB 395..805 773..363 2055 100 Minus
CG15138-PB 1086 beat-IIIc-RB 804..1083 298..19 1400 100 Minus
CG15138-PA 1152 beat-IIIc-RA 301..396 868..773 480 100 Minus
CG15138-PB 1086 beat-IIIc-RB 301..396 868..773 480 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 11:55:00
Subject Length Description Subject Range Query Range Score Percent Strand
beat-IIIc-RA 1709 CG15138-RA 738..1586 868..19 4225 99.9 Minus
beat-IIIc-RB 3836 CG15138-RB 738..1242 868..363 2505 99.8 Minus
beat-IIIc-RB 3836 CG15138-RB 1241..1520 298..19 1400 100 Minus
beat-IIIb-RD 3249 CG33179-RD 1759..1878 516..397 195 77.5 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 11:54:51
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 17189953..17190434 19..500 2410 100 Plus
2L 23513712 2L 17190834..17191099 499..764 1330 100 Plus
2L 23513712 2L 17193532..17193627 773..868 480 100 Plus
Blast to na_te.dros performed on 2015-02-12 11:54:55 has no hits.

BO11994.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:22:54 Download gff for BO11994.3prime
Subject Subject Range Query Range Percent Splice Strand
CG15138-PA 301..1152 18..868 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 04:53:13 Download gff for BO11994.3prime
Subject Subject Range Query Range Percent Splice Strand
CG15138-PA 301..1152 18..868 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 10:30:02 Download gff for BO11994.3prime
Subject Subject Range Query Range Percent Splice Strand
beat-IIIc-RA 738..1591 12..868 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 14:11:25 Download gff for BO11994.3prime
Subject Subject Range Query Range Percent Splice Strand
beat-IIIc-RA 738..1591 12..868 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 14:11:25 Download gff for BO11994.3prime
Subject Subject Range Query Range Percent Splice Strand
2L 17190834..17191099 499..764 100 <- Plus
2L 17193525..17193627 765..868 99   Plus
2L 17189948..17190432 12..498 99 <- Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 10:30:02 Download gff for BO11994.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 17189948..17190432 12..498 99 <- Plus
arm_2L 17190834..17191099 499..764 100 <- Plus
arm_2L 17193525..17193627 765..868 99   Plus

BO11994.5prime Sequence

834 bp (746 high quality bases) assembled on 2006-04-19

> BO11994.5prime
GAAGTTATCAGTCGACATGTTTGGCCATCTCAGTTTGCTGGCCGCTCTGT
TTTTCATCGGCACATTGAAAGATTTCCGCGTTGCTGGGCTGAGACTGACC
GAGGTTCGCATTCCGATGTACGTGATTAAGGGTACCGCGGCGCAGTTGGA
GTGTCTTTACGATCTGGATGGCGAGGCCCTCTACTCCGTGAAATGGTACA
AGGATGGCAACGAGTTCTACCGCTATGTGCCGAGGGATATGCCGCCTGCC
CAAACGTTCCTGCTGCCTGGTGTTAACGTCGATTTACACAACTCGAGCGA
CGCGATTGTTACGCTGCGCAACGTCAATCTGCAGTCGGCGGGCCGCTTCC
GGTGCGAAGTTTCTGGTGAGGCACCCTCCTTCCAAACGGTCACCGAGCAC
GGCGACATGATTGTTGCGTATCTTCCGGACGAAGGATCACCGAAAATCAG
CGGTGGACGACCGCGTTACCAAATCGGAGACTATGTTCGGGTTAATTGCA
CCGCAGGACGTTCCAAGCCTGCTGTGAAACTATCCTGGCAAGTGAATGGA
GAGCCAGTTGAGCAGCAGAAACTCCGCAAATACGACACAATTGTATCGGG
ACGAGATGGTCTAGAAACTTCTGTGCTGGGCCTTCAATTCCGGGTGGAAC
AGAAACACTTTCGCAAAGGCAACATGAAACTAAAGTGCATAGCCGAATTG
TCGACCGTGTACTGGAGGTGCAACGAGGAGTCCGTGGAGGGCGACCGGCC
GCAGAAGGCGCCGGTGCTCGAGTCCCGGGAAACGGTCTACGCCAGCAACT
CACGCGCCGATCCCGTCCAGGTACGTCTTACCGG

BO11994.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:34:55
Subject Length Description Subject Range Query Range Score Percent Strand
CG15138-PA 1152 beat-IIIc-RA 1..803 17..819 3990 99.8 Plus
CG15138-PB 1086 beat-IIIc-RB 1..803 17..819 3990 99.8 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 01:51:21
Subject Length Description Subject Range Query Range Score Percent Strand
beat-IIIc-RA 1709 CG15138-RA 436..1256 15..834 4065 99.8 Plus
beat-IIIc-RB 3836 CG15138-RB 436..1240 15..819 4010 99.9 Plus
beat-IIIb-RD 3249 CG33179-RD 1254..1510 160..416 310 74.7 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 01:51:15
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 17190834..17191099 685..420 1330 100 Minus
2L 23513712 2L 17196875..17197088 283..70 1070 100 Minus
2L 23513712 2L 17190283..17190434 834..684 710 99.3 Minus
2L 23513712 2L 17193525..17193660 419..284 680 100 Minus
2L 23513712 2L 17251509..17251565 71..15 270 98.2 Minus
2L 23513712 2L 16984695..16984781 160..246 240 85.1 Plus
Blast to na_te.dros performed on 2015-02-13 01:51:19 has no hits.

BO11994.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:22:55 Download gff for BO11994.5prime
Subject Subject Range Query Range Percent Splice Strand
CG15138-PA 1..819 17..834 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 04:53:15 Download gff for BO11994.5prime
Subject Subject Range Query Range Percent Splice Strand
CG15138-PB 1..803 17..819 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 11:14:44 Download gff for BO11994.5prime
Subject Subject Range Query Range Percent Splice Strand
beat-IIIc-RA 430..1256 9..834 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 03:18:07 Download gff for BO11994.5prime
Subject Subject Range Query Range Percent Splice Strand
beat-IIIc-RA 430..1256 9..834 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 03:18:07 Download gff for BO11994.5prime
Subject Subject Range Query Range Percent Splice Strand
2L 17196875..17197086 72..283 100 <- Minus
2L 17251509..17251571 9..71 95   Minus
2L 17190283..17190432 686..834 99 <- Minus
2L 17190834..17191099 420..685 100 <- Minus
2L 17193525..17193660 284..419 100 <- Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 11:14:44 Download gff for BO11994.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 17190283..17190432 686..834 99 <- Minus
arm_2L 17190834..17191099 420..685 100 <- Minus
arm_2L 17193525..17193660 284..419 100 <- Minus
arm_2L 17196875..17197086 72..283 100 <- Minus
arm_2L 17251509..17251571 9..71 95   Minus

BO11994.complete Sequence

1183 bp assembled on 2006-10-11

GenBank Submission: FJ632273

> BO11994.complete
GAAGTTATCAGTCGACATGTTTGGCCATCTCAGTTTGCTGGCCGCTCTGT
TTTTCATCGGCACATTGAAAGATTTCCGCGTTGCTGGGCTGAGACTGACC
GAGGTTCGCATTCCGATGTACGTGATTAAGGGTACCGCGGCGCAGTTGGA
GTGTCTTTACGATCTGGATGGCGAGGCCCTCTACTCCGTGAAATGGTACA
AGGATGGCAACGAGTTCTACCGCTATGTGCCGAGGGATATGCCGCCTGCC
CAAACGTTCCTGCTGCCTGGTGTTAACGTCGATTTACACAACTCGAGCGA
CGCGATTGTTACGCTGCGCAACGTCAATCTGCAGTCGGCGGGCCGCTTCC
GGTGCGAAGTTTCTGGTGAGGCACCCTCCTTCCAAACGGTCACCGAGCAC
GGCGACATGATTGTTGCGTATCTTCCGGACGAAGGATCACCGAAAATCAG
CGGTGGACGACCGCGTTACCAAATCGGAGACTATGTTCGGGTTAATTGCA
CCGCAGGACGTTCCAAGCCTGCTGTGAAACTATCCTGGCAAGTGAATGGA
GAGCCAGTTGAGCAGCAGAAACTCCGCAAATACGACACAATTGTATCGGG
ACGAGATGGTCTAGAAACTTCTGTGCTGGGCCTTCAATTCCGGGTGGAAC
AGAAACACTTTCGCAAAGGCAACATGAAACTAAAGTGCATAGCCGAATTG
TCGACCGTGTACTGGAGGTGCAACGAGGAGTCCGTGGAGGGCGACCGGCC
GCAGAAGGCGCCGGTGCTCGAGTCCCGGGAAACGGTCTACGCCAGCAACT
CACGCGCCGATCCCGTCCAAGGTACGTCTTACCGGGAATTATTTGTGACC
AAAATCTTATCGCTCTTGTTCGTCCAACCAAATGCAGCCAGTTCCACGGC
TTCAGCGCCCTCCACACCAATCACGCCACTCGTCCTCCTTCCGGTGGCGC
TGGCGGTGATGGTGATGGCAACCCTGGCGCAGGGAATCACGAGAGATATA
GATACAGATAAAATATCCATGGATCGGACAGCGCCTGGAGGGATTGGGAT
AACGAAAGAAACTCAGCAGGCGAGAGAGTTGCTGGCTGGCCGCAAGGAGG
AAAATCGCAGGACGAGTCACGGAAAATCCGCAACGCAGCTGGAGAAAATT
GCATTGACTGCACGGGCAAGCTTTCTAGACCAT

BO11994.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 08:25:01
Subject Length Description Subject Range Query Range Score Percent Strand
beat-IIIc-RA 1152 CG15138-PA 1..1149 17..1165 5730 99.9 Plus
beat-IIIc-RB 1086 CG15138-PB 1..805 17..821 4010 99.9 Plus
beat-IIIc-RB 1086 CG15138-PB 804..1083 886..1165 1400 100 Plus
beat-IIIb-RD 1215 CG33179-PD 162..418 160..416 310 74.7 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 08:25:03
Subject Length Description Subject Range Query Range Score Percent Strand
beat-IIIc-RA 1709 CG15138-RA 436..1586 15..1165 5740 99.9 Plus
beat-IIIc-RB 3836 CG15138-RB 436..1242 15..821 4020 99.9 Plus
beat-IIIc-RB 3836 CG15138-RB 1241..1520 886..1165 1400 100 Plus
beat-IIIb-RD 3249 CG33179-RD 1254..1510 160..416 310 74.7 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 08:25:00
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 17189953..17190434 1165..684 2410 100 Minus
2L 23513712 2L 17190834..17191099 685..420 1330 100 Minus
2L 23513712 2L 17196875..17197088 283..70 1070 100 Minus
2L 23513712 2L 17193525..17193660 419..284 680 100 Minus
2L 23513712 2L 17251509..17251565 71..15 270 98.2 Minus
2L 23513712 2L 16984695..16984781 160..246 240 85.1 Plus
Blast to na_te.dros performed on 2014-11-28 08:25:00 has no hits.

BO11994.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:31:27 Download gff for BO11994.complete
Subject Subject Range Query Range Percent Splice Strand
beat-IIIc-RA 1..1152 17..1166 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-07-28 16:51:19 Download gff for BO11994.complete
Subject Subject Range Query Range Percent Splice Strand
beat-IIIc-RA 442..1584 23..1167 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:20:26 Download gff for BO11994.complete
Subject Subject Range Query Range Percent Splice Strand
beat-IIIc-RA 444..1586 23..1167 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:31:27 Download gff for BO11994.complete
Subject Subject Range Query Range Percent Splice Strand
beat-IIIc-RA 428..1589 9..1172 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 09:17:45 Download gff for BO11994.complete
Subject Subject Range Query Range Percent Splice Strand
beat-IIIc-RA 444..1586 23..1167 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 09:17:45 Download gff for BO11994.complete
Subject Subject Range Query Range Percent Splice Strand
2L 17196875..17197086 72..283 100 <- Minus
2L 17251509..17251557 23..71 97   Minus
2L 17193525..17193660 284..419 100 <- Minus
2L 17190834..17191099 420..685 100 <- Minus
2L 17189949..17190432 686..1167 99 <- Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:20:26 Download gff for BO11994.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 17196875..17197086 72..283 100 <- Minus
arm_2L 17251509..17251557 23..71 97   Minus
arm_2L 17189949..17190432 686..1167 99 <- Minus
arm_2L 17190834..17191099 420..685 100 <- Minus
arm_2L 17193525..17193660 284..419 100 <- Minus

BO11994.pep Sequence

Translation from 16 to 1183

> BO11994.pep
MFGHLSLLAALFFIGTLKDFRVAGLRLTEVRIPMYVIKGTAAQLECLYDL
DGEALYSVKWYKDGNEFYRYVPRDMPPAQTFLLPGVNVDLHNSSDAIVTL
RNVNLQSAGRFRCEVSGEAPSFQTVTEHGDMIVAYLPDEGSPKISGGRPR
YQIGDYVRVNCTAGRSKPAVKLSWQVNGEPVEQQKLRKYDTIVSGRDGLE
TSVLGLQFRVEQKHFRKGNMKLKCIAELSTVYWRCNEESVEGDRPQKAPV
LESRETVYASNSRADPVQGTSYRELFVTKILSLLFVQPNAASSTASAPST
PITPLVLLPVALAVMVMATLAQGITRDIDTDKISMDRTAPGGIGITKETQ
QARELLAGRKEENRRTSHGKSATQLEKIALTARASFLDH

BO11994.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 23:55:07
Subject Length Description Subject Range Query Range Score Percent Strand
beat-IIIc-PA 383 CG15138-PA 1..383 1..383 1960 100 Plus
beat-IIIc-PB 361 CG15138-PB 1..361 1..383 1819 94.3 Plus
beat-IIIb-PD 404 CG33179-PD 31..295 25..297 788 55.3 Plus
beat-IIIa-PE 343 CG12621-PE 70..308 23..262 774 60.8 Plus
beat-IIIa-PD 343 CG12621-PD 70..308 23..262 774 60.8 Plus