Clone Sequence Records
BO11995.3prime Sequence
864 bp (793 high quality bases) assembled on 2006-04-19
> BO11995.3prime
ATGGTCTAGAAAGCTTGCCTTCTTGGTCATGATCTTCAAGTACTCGAGGG
CATTCTGGGCGGCATGCCGCTGGGCATCGGCAGCTGTTGGTCCGCTGCCG
TGGCAAACGCCAACGGGCAGCGTGGACAGTTGAACCAGGCACTGGAACTG
GCCAGAGAAGGTCTTCTCCTCTATGTCCACATAGGTCACCTCGAACTGGT
TCTCCGTGGCGATTTCGCCCAGCAGCTTGATGTAATCAATCTTGTTGTTC
TTCAAGCAAGTCTTCTGTAACTTAAGCAGTTTTTTGCCCGTTGCATTTTT
TAGGGTCTTATGGAACTGGGATACTTTGTTACTGTGCTGCGTGGTCAGTG
TCGGCACAGAGATATCTTTCAATTCACCATAATAATTTTCACTACTGCGG
GGTTCGCCCTCCAACTCGCCGCAGATGCTGTCGCTGATTTTGCCCGAATC
GATGGGAGTCTCCTGCAGACGCATCCACATGCGGTGGGCGGCCAAGCGCT
TGGCTATCTTCTTGCTTTTGCCCTTGCCCATCTCGCGGTAGTTGAGTATC
GAGCAGGCGATCGTAAAGAGCCGCTCGTGGGGAAGACCCACTTCCGTTTC
CGTTTCGTACGACGGCGGTGGCCATCGCCGTTGCATGCACATTTCCTGCA
ACCAGCCAATCGGATTACCAACGGTCTTGTCGCTGGCATCTCCTCCGCCT
GTGGCATTGGCATTGCCGTCTCCTCCGCTTCCGGCGACCGTGAGCCCAGT
CACCGACGGACCAGCGGAGCTGCTAGGCGATTCCGGCAGCTGCGCGCCGA
TCAGCTTGTCGATGAGCGCACGGGCCGCCGCATGCTTGGCCTCCTTCTTC
GATCGTCCTGCCCC
BO11995.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:34:56
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG6866-PB | 1398 | loqs-RB | 550..1395 | 864..19 | 4230 | 100 | Minus |
| CG6866-PA | 1260 | loqs-RA | 550..1011 | 864..403 | 2310 | 100 | Minus |
| CG6866-PC | 1152 | loqs-RC | 550..1011 | 864..403 | 2310 | 100 | Minus |
| CG6866-PA | 1260 | loqs-RA | 1012..1257 | 264..19 | 1230 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 20:21:30
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| loqs-RB | 2017 | CG6866-RB | 730..1575 | 864..19 | 4230 | 100 | Minus |
| loqs-RF | 2014 | CG6866-RF | 730..1572 | 864..19 | 4175 | 99.6 | Minus |
| loqs-RD | 1334 | CG6866-RD | 730..1191 | 864..403 | 2310 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 20:21:28
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 13383737..13384022 | 688..403 | 1430 | 100 | Minus |
| 2L | 23513712 | 2L | 13384981..13385229 | 267..19 | 1245 | 100 | Minus |
| 2L | 23513712 | 2L | 13383489..13383664 | 864..689 | 880 | 100 | Minus |
| 2L | 23513712 | 2L | 13384657..13384794 | 402..265 | 690 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-10 20:21:29 has no hits.
BO11995.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:22:56 Download gff for
BO11995.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6866-PB | 550..1398 | 18..864 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 04:53:16 Download gff for
BO11995.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6866-PB | 550..1398 | 18..864 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-20 20:38:05 Download gff for
BO11995.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| loqs-RB | 730..1575 | 19..864 | 100 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 22:15:03 Download gff for
BO11995.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| loqs-RB | 730..1575 | 19..864 | 100 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 22:15:03 Download gff for
BO11995.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 13383737..13384022 | 403..688 | 100 | -> | Minus |
| 2L | 13384657..13384794 | 265..402 | 100 | -> | Minus |
| 2L | 13384984..13385229 | 19..264 | 100 | | Minus |
| 2L | 13383489..13383664 | 689..864 | 100 | -> | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-20 20:38:05 Download gff for
BO11995.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 13383489..13383664 | 689..864 | 100 | -> | Minus |
| arm_2L | 13383737..13384022 | 403..688 | 100 | -> | Minus |
| arm_2L | 13384657..13384794 | 265..402 | 100 | -> | Minus |
| arm_2L | 13384984..13385229 | 19..264 | 100 | | Minus |
BO11995.5prime Sequence
867 bp (734 high quality bases) assembled on 2006-04-19
> BO11995.5prime
GAAGTTATCAGTCGACATGGACCAGGAGAATTTCCACGGCTCCAGCTTGC
CGCAGCAGCTACAGAACCTCCACATCCAGCCGCAGCAGGCGTCCCCCAAT
CCTGTCCAGACGGGATTTGCTCCACGGCGGCACTATAATAACCTTGTCGG
CCTGGGCAATGGAAATGCCGTCAGTGGTAGTCCGGTGAAGGGTGCTCCGC
TGGGGCAGCGCCATGTGAAGCTCAAGAAGGAGAAGATATCCGCCCAGGTT
GCGCAGCTGTCTCAGCCAGGTCAGCTGCAGCTGTCAGATGTTGGTGATCC
TGCCTTGGCGGGCGGATCGGGCTTACAAGGTGGAGTCGGCCTTATGGGCG
TAATATTGCCCAGCGACGAGGCCTTAAAGTTCGTCAGCGAAACGGACGCC
AATGGACTGGCCATGAAGACGCCCGTCAGCATTCTGCAAGAGCTGCTAAG
CCGACGAGGAATTACTCCCGGCTATGAACTTGTCCAGATCGAGGGCGCCA
TACATGAGCCGACCTTCCGGTTTCGCGTGTCCTTTAAAGACAAGGATACG
CCCTTCACGGCCATGGGGGCAGGACGATCGAAGAAGGAGGCCAAGCATGC
GGCGGCCCGTGCGCTCATCGACAAGCTGATCGGCGCGCAGCTGCCGGAAT
CGCCTAGCAGCTCCGCTGGTCCGTCGGTGACTGGGCTCACGGTCGCCGGA
AGCGGAGGAGACGGCAATGCCAATGCCACAGGCGGAGGAGATGCCAGCGA
CAAGACCGTTGGTAATCCGATTGGCTGGTTGCAGGAAATGTGCATGCAAC
GGCGATGGCCACCGCCGTCGTACGAAACGGAAACGGAAGTGGGTCTTCCC
ACAAGCGGCTCTTACGA
BO11995.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:34:57
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG6866-PB | 1398 | loqs-RB | 1..834 | 17..850 | 4170 | 100 | Plus |
| CG6866-PA | 1260 | loqs-RA | 1..834 | 17..850 | 4170 | 100 | Plus |
| CG6866-PC | 1152 | loqs-RC | 1..834 | 17..850 | 4170 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 13:28:43
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| loqs-RD | 1334 | CG6866-RD | 180..1028 | 16..863 | 4205 | 99.8 | Plus |
| loqs-RF | 2014 | CG6866-RF | 180..1028 | 16..863 | 4205 | 99.8 | Plus |
| loqs-RE | 1876 | CG6866-RE | 180..1028 | 16..863 | 4205 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 13:28:39
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 13382939..13383664 | 16..741 | 3630 | 100 | Plus |
| 2L | 23513712 | 2L | 13383737..13383859 | 742..863 | 550 | 98.4 | Plus |
Blast to na_te.dros performed on 2015-02-12 13:28:42 has no hits.
BO11995.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:22:57 Download gff for
BO11995.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6866-PC | 1..852 | 17..866 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 04:53:18 Download gff for
BO11995.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6866-PC | 1..852 | 17..866 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 06:27:07 Download gff for
BO11995.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| loqs-RE | 177..1032 | 9..866 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 17:29:11 Download gff for
BO11995.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| loqs-RE | 177..1032 | 9..866 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 17:29:11 Download gff for
BO11995.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 13382936..13383664 | 9..741 | 99 | -> | Plus |
| 2L | 13383737..13383863 | 742..866 | 97 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 06:27:07 Download gff for
BO11995.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 13382936..13383664 | 9..741 | 99 | -> | Plus |
| arm_2L | 13383737..13383863 | 742..866 | 97 | | Plus |
BO11995.complete Sequence
1429 bp assembled on 2006-10-11
GenBank Submission: FJ632274
> BO11995.complete
GAAGTTATCAGTCGACATGGACCAGGAGAATTTCCACGGCTCCAGCTTGC
CGCAGCAGCTACAGAACCTCCACATCCAGCCGCAGCAGGCGTCCCCCAAT
CCTGTCCAGACGGGATTTGCTCCACGGCGGCACTATAATAACCTTGTCGG
CCTGGGCAATGGAAATGCCGTCAGTGGTAGTCCGGTGAAGGGTGCTCCGC
TGGGGCAGCGCCATGTGAAGCTCAAGAAGGAGAAGATATCCGCCCAGGTT
GCGCAGCTGTCTCAGCCAGGTCAGCTGCAGCTGTCAGATGTTGGTGATCC
TGCCTTGGCGGGCGGATCGGGCTTACAAGGTGGAGTCGGCCTTATGGGCG
TAATATTGCCCAGCGACGAGGCCTTAAAGTTCGTCAGCGAAACGGACGCC
AATGGACTGGCCATGAAGACGCCCGTCAGCATTCTGCAAGAGCTGCTAAG
CCGACGAGGAATTACTCCCGGCTATGAACTTGTCCAGATCGAGGGCGCCA
TACATGAGCCGACCTTCCGGTTTCGCGTGTCCTTTAAAGACAAGGATACG
CCCTTCACGGCCATGGGGGCAGGACGATCGAAGAAGGAGGCCAAGCATGC
GGCGGCCCGTGCGCTCATCGACAAGCTGATCGGCGCGCAGCTGCCGGAAT
CGCCTAGCAGCTCCGCTGGTCCGTCGGTGACTGGGCTCACGGTCGCCGGA
AGCGGAGGAGACGGCAATGCCAATGCCACAGGCGGAGGAGATGCCAGCGA
CAAGACCGTTGGTAATCCGATTGGCTGGTTGCAGGAAATGTGCATGCAAC
GGCGATGGCCACCGCCGTCGTACGAAACGGAAACGGAAGTGGGTCTTCCC
CACGAGCGGCTCTTTACGATCGCCTGCTCGATACTCAACTACCGCGAGAT
GGGCAAGGGCAAAAGCAAGAAGATAGCCAAGCGCTTGGCCGCCCACCGCA
TGTGGATGCGTCTGCAGGAGACTCCCATCGATTCGGGCAAAATCAGCGAC
AGCATCTGCGGCGAGTTGGAGGGCGAACCCCGCAGTAGTGAAAATTATTA
TGGTGAATTGAAAGATATCTCTGTGCCGACACTGACCACGCAGCACAGTA
ACAAAGTATCCCAGTTCCATAAGACCCTAAAAAATGCAACGGGCAAAAAA
CTGCTTAAGTTACAGAAGACTTGCTTGAAGAACAACAAGATTGATTACAT
CAAGCTGCTGGGCGAAATCGCCACGGAGAACCAGTTCGAGGTGACCTATG
TGGACATAGAGGAGAAGACCTTCTCTGGCCAGTTCCAGTGCCTGGTTCAA
CTGTCCACGCTGCCCGTTGGCGTTTGCCACGGCAGCGGACCAACAGCTGC
CGATGCCCAGCGGCATGCCGCCCAGAATGCCCTCGAGTACTTGAAGATCA
TGACCAAGAAGGCAAGCTTTCTAGACCAT
BO11995.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 16:12:42
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| loqs-RB | 1398 | CG6866-PB | 1..1395 | 17..1411 | 6975 | 100 | Plus |
| loqs-RF | 1395 | CG6866-PF | 1..1392 | 17..1411 | 6895 | 99.8 | Plus |
| loqs-RD | 1080 | CG6866-PD | 1..1011 | 17..1027 | 5055 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:12:43
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| loqs-RB | 2017 | CG6866-RB | 180..1575 | 16..1411 | 6980 | 100 | Plus |
| loqs-RF | 2014 | CG6866-RF | 180..1572 | 16..1411 | 6900 | 99.8 | Plus |
| loqs-RD | 1334 | CG6866-RD | 180..1191 | 16..1027 | 5060 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 16:12:40
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 13382939..13383664 | 16..741 | 3630 | 100 | Plus |
| 2L | 23513712 | 2L | 13383737..13384022 | 742..1027 | 1430 | 100 | Plus |
| 2L | 23513712 | 2L | 13384981..13385229 | 1163..1411 | 1245 | 100 | Plus |
| 2L | 23513712 | 2L | 13384657..13384794 | 1028..1165 | 690 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 16:12:41 has no hits.
BO11995.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 13:40:44 Download gff for
BO11995.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| loqs-RB | 1..1398 | 17..1412 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:03:33 Download gff for
BO11995.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| loqs-RB | 181..1579 | 9..1411 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:51:12 Download gff for
BO11995.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| loqs-RB | 181..1575 | 17..1413 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 13:40:44 Download gff for
BO11995.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| loqs-RB | 181..1579 | 9..1411 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 17:13:23 Download gff for
BO11995.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| loqs-RB | 181..1575 | 17..1413 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 17:13:23 Download gff for
BO11995.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 13384657..13384794 | 1028..1165 | 100 | -> | Plus |
| 2L | 13384984..13385229 | 1166..1413 | 99 | | Plus |
| 2L | 13382940..13383664 | 17..741 | 100 | -> | Plus |
| 2L | 13383737..13384022 | 742..1027 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:51:12 Download gff for
BO11995.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 13382940..13383664 | 17..741 | 100 | -> | Plus |
| arm_2L | 13383737..13384022 | 742..1027 | 100 | -> | Plus |
| arm_2L | 13384657..13384794 | 1028..1165 | 100 | -> | Plus |
| arm_2L | 13384984..13385229 | 1166..1413 | 99 | | Plus |
BO11995.pep Sequence
Translation from 16 to 1429
> BO11995.pep
MDQENFHGSSLPQQLQNLHIQPQQASPNPVQTGFAPRRHYNNLVGLGNGN
AVSGSPVKGAPLGQRHVKLKKEKISAQVAQLSQPGQLQLSDVGDPALAGG
SGLQGGVGLMGVILPSDEALKFVSETDANGLAMKTPVSILQELLSRRGIT
PGYELVQIEGAIHEPTFRFRVSFKDKDTPFTAMGAGRSKKEAKHAAARAL
IDKLIGAQLPESPSSSAGPSVTGLTVAGSGGDGNANATGGGDASDKTVGN
PIGWLQEMCMQRRWPPPSYETETEVGLPHERLFTIACSILNYREMGKGKS
KKIAKRLAAHRMWMRLQETPIDSGKISDSICGELEGEPRSSENYYGELKD
ISVPTLTTQHSNKVSQFHKTLKNATGKKLLKLQKTCLKNNKIDYIKLLGE
IATENQFEVTYVDIEEKTFSGQFQCLVQLSTLPVGVCHGSGPTAADAQRH
AAQNALEYLKIMTKKASFLDH
BO11995.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:51:55
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| loqs-PB | 465 | CG6866-PB | 1..465 | 1..465 | 2407 | 100 | Plus |
| loqs-PF | 464 | CG6866-PF | 1..464 | 1..465 | 2390 | 99.8 | Plus |
| loqs-PA | 419 | CG6866-PA | 1..419 | 1..465 | 2114 | 90.1 | Plus |
| loqs-PE | 418 | CG6866-PE | 1..418 | 1..465 | 2108 | 89.9 | Plus |
| loqs-PC | 383 | CG6866-PC | 1..345 | 1..345 | 1750 | 98 | Plus |
