Clone BO11996 Report

Search the DGRC for BO11996

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:119
Well:96
Vector:pDNR-Dual
Associated Gene/TranscriptAct87E-RA
Protein status:BO11996.pep: validated full length
Sequenced Size:1162

Clone Sequence Records

BO11996.3prime Sequence

806 bp (780 high quality bases) assembled on 2006-04-19

> BO11996.3prime
ATGGTCTAGAAAGCTTGCGAAGCACTTGCGGTGGACGATTCCTGGGCCGG
ACTCGTCGTACTCCTGCTTGGAGATCCACATCTGCTGGAAGGTGGACAGG
GAGGCCAGGATGGAGCCACCGATCCAGACGGAGTACTTGCGCTCCGGTGG
GGCAATGATCTTGATCTTGATGGTGGACGGCGCCAGGGCGGTGATCTCCT
TCTGCATACGATCGGCAATACCAGGGTACATGGTGGTACCACCCGACATG
ACGATGTTAGCATACAGATCCTTACGGATGTCCACATCGCACTTCATGAT
CGAGTTGTACACGGTCTCGTGGATGCCGCACGATTCCATTCCCAGGAAAG
AGGGCTGGAACAGCGACTCTGGGCAGCGGAAACGTTCGTTGCCGATGGTG
ATCACCTGTCCGTCGGGAAGCTCGTATGACTTCTCCAGGGATGTGGAGGC
GGCGGCGGTGGCCATCTCCTGCTCAAAGTCCAGGGCAACATAGCACAGCT
TCTCCTTGATGTCGCGAACGATTTCACGCTCAGCGGTGGTGGTGAATGAG
TAACCGCGCTCGGTCAGGATCTTCATCAGGTAGTCGGTCAAATCGCGACC
AGCCAGATCCAGACGCAGGATGGCGTGGGGCAGGGCGTAACCCTCGTAGA
TGGGCACGGTGTGGGAGACACCGTCACCGGAGTCGAGGACAATACCGGTG
GTACGACCGGAGGCGTACAGCGAGAGCACAGCCTGGATGGCCACATACAT
GGCGGGTGCGTTGAAGGTCTCGAACATGATCTGGGTCATCTTCTCGCGAT
TGGCCT

BO11996.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:34:57
Subject Length Description Subject Range Query Range Score Percent Strand
CG18290-PA 1131 Act87E-RA 341..1128 806..19 3940 100 Minus
CG18290-PB 1131 Act87E-RB 341..1128 806..19 3940 100 Minus
CG10067-PA 1131 Act57B-RA 349..1128 798..19 2575 93.2 Minus
CG4027-PB 1131 Act5C-RB 341..692 806..455 1385 95.7 Minus
CG4027-PA 1131 Act5C-RA 341..692 806..455 1385 95.7 Minus
CG4027-PC 1131 Act5C-RC 341..692 806..455 1385 95.7 Minus
CG4027-PD 1131 Act5C-RD 341..692 806..455 1385 95.7 Minus
CG5178-PA 1131 Act88F-RA 341..593 806..554 840 93.2 Minus
CG4027-PB 1131 Act5C-RB 838..1103 309..44 830 92.4 Minus
CG4027-PA 1131 Act5C-RA 838..1103 309..44 830 92.4 Minus
CG4027-PC 1131 Act5C-RC 838..1103 309..44 830 92.4 Minus
CG4027-PD 1131 Act5C-RD 838..1103 309..44 830 92.4 Minus
CG5178-PA 1131 Act88F-RA 907..1127 240..20 780 94.1 Minus
CG7478-PA 1131 Act79B-RA 341..593 806..554 765 92 Minus
CG5178-PA 1131 Act88F-RA 601..887 546..260 760 90.5 Minus
CG7478-PA 1131 Act79B-RA 937..1128 210..19 585 92.1 Minus
CG7478-PA 1131 Act79B-RA 601..761 546..386 430 90.6 Minus
CG4027-PB 1131 Act5C-RB 710..812 437..335 315 92.2 Minus
CG4027-PA 1131 Act5C-RA 710..812 437..335 315 92.2 Minus
CG4027-PC 1131 Act5C-RC 710..812 437..335 315 92.2 Minus
CG4027-PD 1131 Act5C-RD 710..812 437..335 315 92.2 Minus
CG12051-PA 1131 Act42A-RA 463..597 684..550 300 88.8 Minus
CG12051-PA 1131 Act42A-RA 601..695 546..452 275 91.5 Minus
CG12051-PA 1131 Act42A-RA 967..1103 180..44 260 87.5 Minus
CG7478-PA 1131 Act79B-RA 787..887 360..260 230 89.1 Minus
CG12051-PA 1131 Act42A-RA 346..455 801..692 200 87.2 Minus
CG12051-PA 1131 Act42A-RA 706..794 441..353 145 86.5 Minus
CG12051-PA 1131 Act42A-RA 838..884 309..263 135 91.4 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-03 17:37:22
Subject Length Description Subject Range Query Range Score Percent Strand
Act87E-RC 1853 CG18290-RC 422..1209 806..19 3940 100 Minus
Act87E-RB 1643 CG18290-RB 498..1285 806..19 3940 100 Minus
Act87E-RA 1567 CG18290-RA 422..1209 806..19 3940 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-03 17:37:13
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 13426944..13427731 806..19 3940 100 Minus
2R 25286936 2R 20945144..20945931 806..19 3115 93 Minus
X 23542271 X 5903038..5903825 806..19 2980 91.9 Minus
3R 32079331 3R 15440956..15441543 806..219 2100 90.5 Minus
2R 25286936 2R 6014273..6015060 19..806 2080 84.3 Plus
3R 32079331 3R 15441601..15441803 222..20 820 93.6 Minus
2R 25286936 2R 16774783..16774956 795..622 225 75.3 Minus
Blast to na_te.dros performed on 2015-02-03 17:37:17 has no hits.

BO11996.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:22:58 Download gff for BO11996.3prime
Subject Subject Range Query Range Percent Splice Strand
CG18290-PA 341..1131 15..806 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 04:53:19 Download gff for BO11996.3prime
Subject Subject Range Query Range Percent Splice Strand
CG18290-PA 341..1131 15..806 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-09 05:36:32 Download gff for BO11996.3prime
Subject Subject Range Query Range Percent Splice Strand
Act87E-RA 420..1221 4..806 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-03 19:03:10 Download gff for BO11996.3prime
Subject Subject Range Query Range Percent Splice Strand
Act87E-RA 422..1223 4..806 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-03 19:03:10 Download gff for BO11996.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 13426944..13427745 4..806 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-09 05:36:32 Download gff for BO11996.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 9252666..9253467 4..806 99   Minus

BO11996.5prime Sequence

860 bp (781 high quality bases) assembled on 2006-04-19

> BO11996.5prime
GAAGTTATCAGTCGACATGTGTGACGATGAGGTTGCCGCATTGGTCGTGG
ACAATGGTTCCGGAATGTGCAAGGCAGGATTCGCCGGCGATGATGCGCCC
CGCGCCGTCTTCCCCTCGATTGTGGGTCGTCCCCGTCATCAGGGCGTAAT
GGTGGGCATGGGACAGAAGGACTCCTATGTTGGTGATGAGGCCCAGAGCA
AGCGTGGTATCCTCACCCTGAAATACCCCATCGAGCACGGCATCATCACC
AACTGGGACGATATGGAGAAGATCTGGCACCACACTTTCTATAACGAGCT
GCGCGTCGCCCCCGAGGAACACCCCGTCCTGCTGACCGAGGCCCCCCTGA
ACCCCAAGGCCAATCGCGAGAAGATGACCCAGATCATGTTCGAGACCTTC
AACGCACCCGCCATGTATGTGGCCATCCAGGCTGTGCTCTCGCTGTACGC
CTCCGGTCGTACCACCGGTATTGTCCTCGACTCCGGTGACGGTGTCTCCC
ACACCGTGCCCATCTACGAGGGTTACGCCCTGCCCCACGCCATCCTGCGT
CTGGATCTGGCTGGTCGCGATTTGACCGACTACCTGATGAAGATCCTGAC
CGAGCGCGGTTACTCATTCACCACCACCGCTGAGCGTGAAATCGTTCGCG
ACATCAAGGAGAAGCTGTGCTATGTTGCCCTGGACTTTGAGCAGGAGATG
GCCACCGCCGCCGCCTCCACATCCCTGGAGAAGTCATACGAGCTTCCCGA
CGGACAGGTGATCACCATCGGCAACGAACGTTTCCGCTGCCCAGAGTCGC
TGTTCCAGCCCTCTTTCCTGGGAATGGAATCGTGCGGCATCCACGAAACC
GTGTACAACT

BO11996.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:34:58
Subject Length Description Subject Range Query Range Score Percent Strand
CG18290-PA 1131 Act87E-RA 1..844 17..860 4195 99.8 Plus
CG18290-PB 1131 Act87E-RB 1..844 17..860 4195 99.8 Plus
CG10067-PA 1131 Act57B-RA 1..844 17..860 2370 91.2 Plus
CG4027-PB 1131 Act5C-RB 49..692 65..708 2095 93 Plus
CG4027-PA 1131 Act5C-RA 49..692 65..708 2095 93 Plus
CG4027-PC 1131 Act5C-RC 49..692 65..708 2095 93 Plus
CG4027-PD 1131 Act5C-RD 49..692 65..708 2095 93 Plus
CG7478-PA 1131 Act79B-RA 202..593 218..609 1110 91.3 Plus
CG5178-PA 1131 Act88F-RA 317..593 333..609 910 93.1 Plus
CG5178-PA 1131 Act88F-RA 601..844 617..860 570 89.3 Plus
CG7478-PA 1131 Act79B-RA 601..761 617..777 430 90.6 Plus
CG12051-PA 1131 Act42A-RA 112..312 128..328 380 87.5 Plus
CG5178-PA 1131 Act88F-RA 181..302 197..318 360 91.8 Plus
CG4027-PB 1131 Act5C-RB 710..812 726..828 315 92.2 Plus
CG4027-PA 1131 Act5C-RA 710..812 726..828 315 92.2 Plus
CG4027-PC 1131 Act5C-RC 710..812 726..828 315 92.2 Plus
CG4027-PD 1131 Act5C-RD 710..812 726..828 315 92.2 Plus
CG12051-PA 1131 Act42A-RA 463..597 479..613 300 88.8 Plus
CG12051-PA 1131 Act42A-RA 601..695 617..711 275 91.5 Plus
CG7478-PA 1131 Act79B-RA 26..157 42..173 260 87.8 Plus
CG12051-PA 1131 Act42A-RA 332..455 348..471 245 87.9 Plus
CG5178-PA 1131 Act88F-RA 64..158 80..174 175 87.3 Plus
CG12051-PA 1131 Act42A-RA 706..794 722..810 145 86.5 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 10:38:44
Subject Length Description Subject Range Query Range Score Percent Strand
Act87E-RC 1853 CG18290-RC 82..925 17..860 4205 99.9 Plus
Act87E-RB 1643 CG18290-RB 158..1001 17..860 4205 99.9 Plus
Act87E-RA 1567 CG18290-RA 82..925 17..860 4205 99.9 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 10:38:39
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 13426604..13427447 17..860 4205 99.9 Plus
X 23542271 X 5902698..5903541 17..860 3020 90.5 Plus
2R 25286936 2R 20944846..20945647 59..860 2990 91.5 Plus
3R 32079331 3R 15440616..15441459 17..860 2705 88 Plus
Blast to na_te.dros performed on 2015-02-11 10:38:42 has no hits.

BO11996.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:22:59 Download gff for BO11996.5prime
Subject Subject Range Query Range Percent Splice Strand
CG18290-PA 1..844 17..860 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 04:53:20 Download gff for BO11996.5prime
Subject Subject Range Query Range Percent Splice Strand
CG18290-PB 1..844 17..860 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-24 03:07:56 Download gff for BO11996.5prime
Subject Subject Range Query Range Percent Splice Strand
Act87E-RA 73..923 10..860 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 12:19:54 Download gff for BO11996.5prime
Subject Subject Range Query Range Percent Splice Strand
Act87E-RA 75..925 10..860 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 12:19:54 Download gff for BO11996.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 13426597..13427447 10..860 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 03:07:56 Download gff for BO11996.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 9252319..9253169 10..860 99   Plus

BO11996.complete Sequence

1162 bp assembled on 2006-10-11

GenBank Submission: FJ632275

> BO11996.complete
GAAGTTATCAGTCGACATGTGTGACGATGAGGTTGCCGCATTGGTCGTGG
ACAATGGTTCCGGAATGTGCAAGGCAGGATTCGCCGGCGATGATGCGCCC
CGCGCCGTCTTCCCCTCGATTGTGGGTCGTCCCCGTCATCAGGGCGTAAT
GGTGGGCATGGGACAGAAGGACTCCTATGTTGGTGATGAGGCCCAGAGCA
AGCGTGGTATCCTCACCCTGAAATACCCCATCGAGCACGGCATCATCACC
AACTGGGACGATATGGAGAAGATCTGGCACCACACTTTCTATAACGAGCT
GCGCGTCGCCCCCGAGGAACACCCCGTCCTGCTGACCGAGGCCCCCCTGA
ACCCCAAGGCCAATCGCGAGAAGATGACCCAGATCATGTTCGAGACCTTC
AACGCACCCGCCATGTATGTGGCCATCCAGGCTGTGCTCTCGCTGTACGC
CTCCGGTCGTACCACCGGTATTGTCCTCGACTCCGGTGACGGTGTCTCCC
ACACCGTGCCCATCTACGAGGGTTACGCCCTGCCCCACGCCATCCTGCGT
CTGGATCTGGCTGGTCGCGATTTGACCGACTACCTGATGAAGATCCTGAC
CGAGCGCGGTTACTCATTCACCACCACCGCTGAGCGTGAAATCGTTCGCG
ACATCAAGGAGAAGCTGTGCTATGTTGCCCTGGACTTTGAGCAGGAGATG
GCCACCGCCGCCGCCTCCACATCCCTGGAGAAGTCATACGAGCTTCCCGA
CGGACAGGTGATCACCATCGGCAACGAACGTTTCCGCTGCCCAGAGTCGC
TGTTCCAGCCCTCTTTCCTGGGAATGGAATCGTGCGGCATCCACGAGACC
GTGTACAACTCGATCATGAAGTGCGATGTGGACATCCGTAAGGATCTGTA
TGCTAACATCGTCATGTCGGGTGGTACCACCATGTACCCTGGTATTGCCG
ATCGTATGCAGAAGGAGATCACCGCCCTGGCGCCGTCCACCATCAAGATC
AAGATCATTGCCCCACCGGAGCGCAAGTACTCCGTCTGGATCGGTGGCTC
CATCCTGGCCTCCCTGTCCACCTTCCAGCAGATGTGGATCTCCAAGCAGG
AGTACGACGAGTCCGGCCCAGGAATCGTCCACCGCAAGTGCTTCGCAAGC
TTTCTAGACCAT

BO11996.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 10:24:46
Subject Length Description Subject Range Query Range Score Percent Strand
Act87E-RC 1131 CG18290-PC 1..1128 17..1144 5640 100 Plus
Act87E-RB 1131 CG18290-PB 1..1128 17..1144 5640 100 Plus
Act87E-RA 1131 CG18290-PA 1..1128 17..1144 5640 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 10:24:47
Subject Length Description Subject Range Query Range Score Percent Strand
Act87E-RC 1853 CG18290-RC 82..1209 17..1144 5640 100 Plus
Act87E-RB 1643 CG18290-RB 158..1285 17..1144 5640 100 Plus
Act87E-RA 1567 CG18290-RA 82..1209 17..1144 5640 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 10:24:44
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 13426604..13427731 17..1144 5640 100 Plus
2R 25286936 2R 20944846..20945931 59..1144 4140 92.1 Plus
X 23542271 X 5902698..5903825 17..1144 4065 90.7 Plus
3R 32079331 3R 15440616..15441543 17..944 2990 88.1 Plus
2R 25286936 2R 6014273..6015400 1144..17 2940 84 Minus
3L 28110227 3L 21985349..21986277 15..943 2890 87.4 Plus
3R 32079331 3R 15441601..15441803 941..1143 820 93.6 Plus
3L 28110227 3L 21986637..21986840 941..1144 750 91.2 Plus
2R 25286936 2R 16774750..16774956 335..541 255 74.9 Plus
Blast to na_te.dros performed on 2014-11-27 10:24:45 has no hits.

BO11996.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 13:45:11 Download gff for BO11996.complete
Subject Subject Range Query Range Percent Splice Strand
Act87E-RB 1..1131 17..1148 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:04:06 Download gff for BO11996.complete
Subject Subject Range Query Range Percent Splice Strand
Act87E-RB 151..1299 10..1159 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 10:08:20 Download gff for BO11996.complete
Subject Subject Range Query Range Percent Splice Strand
Act87E-RA 80..1207 17..1146 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 13:45:11 Download gff for BO11996.complete
Subject Subject Range Query Range Percent Splice Strand
Act87E-RB 151..1299 10..1159 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:21:08 Download gff for BO11996.complete
Subject Subject Range Query Range Percent Splice Strand
Act87E-RA 82..1209 17..1146 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 11:21:08 Download gff for BO11996.complete
Subject Subject Range Query Range Percent Splice Strand
3R 13426604..13427731 17..1146 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 10:08:20 Download gff for BO11996.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 9252326..9253453 17..1146 99   Plus

BO11996.pep Sequence

Translation from 16 to 1162

> BO11996.pep
MCDDEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQ
KDSYVGDEAQSKRGILTLKYPIEHGIITNWDDMEKIWHHTFYNELRVAPE
EHPVLLTEAPLNPKANREKMTQIMFETFNAPAMYVAIQAVLSLYASGRTT
GIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDYLMKILTERGYS
FTTTAEREIVRDIKEKLCYVALDFEQEMATAAASTSLEKSYELPDGQVIT
IGNERFRCPESLFQPSFLGMESCGIHETVYNSIMKCDVDIRKDLYANIVM
SGGTTMYPGIADRMQKEITALAPSTIKIKIIAPPERKYSVWIGGSILASL
STFQQMWISKQEYDESGPGIVHRKCFASFLDH

BO11996.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 23:35:36
Subject Length Description Subject Range Query Range Score Percent Strand
Act87E-PC 376 CG18290-PC 1..376 1..376 1967 100 Plus
Act87E-PB 376 CG18290-PB 1..376 1..376 1967 100 Plus
Act87E-PA 376 CG18290-PA 1..376 1..376 1967 100 Plus
Act57B-PA 376 CG10067-PA 1..376 1..376 1958 99.2 Plus
Act88F-PA 376 CG5178-PA 1..376 1..376 1936 97.6 Plus