Clone Sequence Records
BO12002.3prime Sequence
824 bp (793 high quality bases) assembled on 2006-04-18
> BO12002.3prime
ATGGTCTAGAAAGCTTGCTAGCGTGTAGCCCAATTTGGAGACCCAACCCA
AACCCTCGACAGTGGTCGTCTTCGGCTTGTACTCGCAACCGATCCATCCA
TCATAGCCGAATTCCTGGAGAGCCTTGAACACAAATCCGTAGTCCAGCTC
ACCGGAAACATCCGGCTCGTGGCGATGCGGCACCTGGGCGATCTGAAAGT
GTCCAATCAGCGCCTTGTACTCCTCGAGCGTCTTGGAAACGTTGCCGTGC
AAATGCTGCAGGTGATACAGATCGGCCAGCAATTGAATGTTGTCCGCAGC
CACATCGGCCAGAATTCCAGCGGCTTTGGAGTATGAATTCATGTAGTAGC
CAGGCACGGCGTACTTGTTAATTGGCTCTATCACGCCGATCATTTTACTG
GCTCTAAGGCTATCGGCGGCGATCTTTAGATTGGCGGTATACGTCTTCGT
GTAGTCACTCTCCTGGCCGCCCTTGAAGAGTCCAGCGGTTAGATGAATCT
TGCCACAGTTAACCTGTCGGGCGAAATCAATGGTGGCATCCAATTGGCTA
CGGAACAGCTTTTCCGAGCCGGGCACACTGGTGGAGCCGAAACGCAGCTG
ATCGTCGCTCTTGTCGAAGGCCAGATTCACCAGACTGACCACCACACCCG
TCTCCTTTACGGCGGACACCACGTCGCTCGTCTCGCCTTCGGGATAGGGG
ATCTCTACCGCACGGAATCCGTTCTGGTGGGCCAGACGAATTCGCTCCGC
GATCGACGTCGCTCTTTCCGTGAACAAAAAGTTCAGATTCGCTGCAAACT
TGAGTGCCATGTCGACTGATAACT
BO12002.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:35:01
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG2227-PA | 795 | Gip-RA | 1..792 | 810..19 | 3960 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 04:12:55
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Gip-RA | 996 | CG2227-RA | 111..902 | 810..19 | 3960 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 04:12:53
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 10328971..10329762 | 19..810 | 3960 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-12 04:12:54 has no hits.
BO12002.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:23:02 Download gff for
BO12002.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Gip-PA | 1..795 | 15..810 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 04:53:24 Download gff for
BO12002.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG2227-PA | 1..795 | 15..810 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 23:35:47 Download gff for
BO12002.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Gip-RA | 88..884 | 11..810 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 06:55:28 Download gff for
BO12002.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Gip-RA | 111..907 | 11..810 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 06:55:28 Download gff for
BO12002.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 10328966..10329762 | 11..810 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 23:35:47 Download gff for
BO12002.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 10222999..10223795 | 11..810 | 99 | | Plus |
BO12002.5prime Sequence
824 bp (754 high quality bases) assembled on 2006-04-18
> BO12002.5prime
GAAGTTATCAGTCGACATGGCACTCAAGTTTGCAGCGAATCTGAACTTTT
TGTTCACGGAAAGAGCGACGTCGATCGCGGAGCGAATTCGTCTGGCCCAC
CAGAACGGATTCCGTGCGGTAGAGATCCCCTATCCCGAAGGCGAGACGAG
CGACGTGGTGTCCGCCGTAAAGGAGACGGGTGTGGTGGTCAGTCTGGTGA
ATCTGGCCTTCGACAAGAGCGACGATCAGCTGCGTTTCGGCTCCACCAGT
GTGCCCGGCTCGGAAAAGCTGTTCCGTAGCCAATTGGATGCCACCATTGA
TTTCGCCCGACAGGTTAACTGTGGCAAGATTCATCTAACCGCTGGACTCT
TCAAGGGCGGCCAGGAGAGTGACTACACGAAGACGTATACCGCCAATCTA
AAGATCGCCGCCGATAGCCTTAGAGCCAGTAAAATGATCGGCGTGATAGA
GCCAATTAACAAGTACGCCGTGCCTGGCTACTACATGAATTCATACTCCA
AAGCCGCTGGAATTCTGGCCGATGTGGCTGCGGACAACATTCAATTGCTG
GCCGATCTGTATCACCTGCAGCATTTGCACGGCAACGTTTCCAAGACGCT
CGAGGAGTACAAGGCGCTGATTGGACACTTTCAGATCGCCCAGGTGCCGC
ATCGCCACGAGCCGGATGTTTCCGGTGAGCTGGACTACGGATTTGTGTTC
AAGGCTCTCCAGGAATTCGGCTATGATGGATGGATCGGTTGCGAGTACAA
GCCGAAGACGACCACTGTCGAGGGTTTGGGTTGGGTCTCCAAATTGGGCT
ACCCGCTAGCAAGCTTTCTAGACC
BO12002.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:35:02
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG2227-PA | 795 | Gip-RA | 1..792 | 17..808 | 3935 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 16:58:36
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Gip-RA | 996 | CG2227-RA | 111..902 | 17..808 | 3945 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 16:58:27
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 10328971..10329762 | 808..17 | 3945 | 99.9 | Minus |
Blast to na_te.dros performed on 2015-02-11 16:58:32 has no hits.
BO12002.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:23:03 Download gff for
BO12002.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Gip-PA | 1..795 | 17..812 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 04:53:25 Download gff for
BO12002.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG2227-PA | 1..795 | 17..812 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-26 16:48:17 Download gff for
BO12002.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Gip-RA | 88..884 | 17..816 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 19:24:17 Download gff for
BO12002.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Gip-RA | 111..907 | 17..816 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 19:24:17 Download gff for
BO12002.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 10328966..10329762 | 17..816 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-26 16:48:17 Download gff for
BO12002.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 10222999..10223795 | 17..816 | 99 | | Minus |
BO12002.complete Sequence
826 bp assembled on 2006-10-11
GenBank Submission: FJ632276
> BO12002.complete
GAAGTTATCAGTCGACATGGCACTCAAGTTTGCAGCGAATCTGAACTTTT
TGTTCACGGAAAGAGCGACGTCGATCGCGGAGCGAATTCGTCTGGCCCAC
CAGAACGGATTCCGTGCGGTAGAGATCCCCTATCCCGAAGGCGAGACGAG
CGACGTGGTGTCCGCCGTAAAGGAGACGGGTGTGGTGGTCAGTCTGGTGA
ATCTGGCCTTCGACAAGAGCGACGATCAGCTGCGTTTCGGCTCCACCAGT
GTGCCCGGCTCGGAAAAGCTGTTCCGTAGCCAATTGGATGCCACCATTGA
TTTCGCCCGACAGGTTAACTGTGGCAAGATTCATCTAACCGCTGGACTCT
TCAAGGGCGGCCAGGAGAGTGACTACACGAAGACGTATACCGCCAATCTA
AAGATCGCCGCCGATAGCCTTAGAGCCAGTAAAATGATCGGCGTGATAGA
GCCAATTAACAAGTACGCCGTGCCTGGCTACTACATGAATTCATACTCCA
AAGCCGCTGGAATTCTGGCCGATGTGGCTGCGGACAACATTCAATTGCTG
GCCGATCTGTATCACCTGCAGCATTTGCACGGCAACGTTTCCAAGACGCT
CGAGGAGTACAAGGCGCTGATTGGACACTTTCAGATCGCCCAGGTGCCGC
ATCGCCACGAGCCGGATGTTTCCGGTGAGCTGGACTACGGATTTGTGTTC
AAGGCTCTCCAGGAATTCGGCTATGATGGATGGATCGGTTGCGAGTACAA
GCCGAAGACGACCACTGTCGAGGGTTTGGGTTGGGTCTCCAAATTGGGCT
ACACGCTAGCAAGCTTTCTAGACCAT
BO12002.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 15:19:49
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Gip-RA | 795 | CG2227-PA | 1..792 | 17..808 | 3960 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 15:19:50
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Gip-RA | 996 | CG2227-RA | 111..902 | 17..808 | 3960 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 15:19:47
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 10328971..10329762 | 808..17 | 3960 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-26 15:19:48 has no hits.
BO12002.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:00:57 Download gff for
BO12002.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Gip-RA | 1..795 | 17..812 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:13:34 Download gff for
BO12002.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Gip-RA | 88..884 | 17..816 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 23:51:29 Download gff for
BO12002.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Gip-RA | 88..879 | 17..810 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:00:58 Download gff for
BO12002.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Gip-RA | 88..884 | 17..816 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:11:06 Download gff for
BO12002.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Gip-RA | 111..902 | 17..810 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 16:11:06 Download gff for
BO12002.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 10328969..10329762 | 17..810 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 23:51:29 Download gff for
BO12002.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 10223002..10223795 | 17..810 | 99 | | Minus |
BO12002.pep Sequence
Translation from 16 to 826
> BO12002.pep
MALKFAANLNFLFTERATSIAERIRLAHQNGFRAVEIPYPEGETSDVVSA
VKETGVVVSLVNLAFDKSDDQLRFGSTSVPGSEKLFRSQLDATIDFARQV
NCGKIHLTAGLFKGGQESDYTKTYTANLKIAADSLRASKMIGVIEPINKY
AVPGYYMNSYSKAAGILADVAADNIQLLADLYHLQHLHGNVSKTLEEYKA
LIGHFQIAQVPHRHEPDVSGELDYGFVFKALQEFGYDGWIGCEYKPKTTT
VEGLGWVSKLGYTLASFLDH
BO12002.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:54:12
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Gip-PA | 264 | CG2227-PA | 1..264 | 1..264 | 1363 | 100 | Plus |
