Clone Sequence Records
BO12003.3prime Sequence
952 bp (844 high quality bases) assembled on 2006-04-20
> BO12003.3prime
ATGGTCTAGAAAGCTTGCGTGTTCAATGGTCCATCGTTGGGATTCGCTGT
GGGGATCGCAAGGCGCCACCTGGGCGTCGTCCAGGCTTTTGAGTCCCTGA
TGATCGAGGCACATGCCCGTGTTGCTGTGAATGATGTGCTGGTGCTCGTA
TCGCCACTGCTCGTTGAACTCATCATTCTCCATGCAGGGCACCATCACGA
CCCGGTACGGTGGGGACTCGCTGTGCTGCACGGTTGCACAGCTTAGCTCG
TTGCGCAGGACATTTGTGTTGGTGAAGGAGAATAGCTGCGACTTCTGCAA
CACCTTGCCGCATGGGTACAAGCCGGCGTTATAGGGCTTTTCGTTGTTCT
GCAGCAAATCGTCCAGACATATGTTCGAATTCACAGCGTGCACTTTACCC
CATCCCTGCACGTCCTTCGTGGGCACAAACTTCTCCGGATAGATGTTCTT
GAGGTACCACTCGAAGCTCTTGCAGCGGAGCTTTTTGCGCAGCATTACTC
GGTGGGTGACATCTCCAATGTCCGCGTGGAACTTTAGGTCCGGCCGGTTG
AGGAAAAATATGTTGATGTACTCATCCATCCAAACCAGAGCCATGCGGGC
AGTATTAATACCGTGTGTATCGCGATCGTTGGGGAATTTGTAAGGATGGA
AGTCGCGGAATATGTGTCCAACGCGGGAGCAGGGAATAGTCTCGATGGTG
CCGCCGCACTGCCAGATGCGAAAGGACATCTCCAGGTTCTCACCACCCCA
ACCGTCCATTTGTTCGTCGTAGCTGCCCACTTCCCAGAAGTAGCGACGAT
CTATGGCNAACAGTCCGCCGGCCATGGTGGGACTGTATGCTGGACAGATC
TCCCGCTCCTGCTTGCATTCGCGTCGCTGGCGCTGCTTCCCCCGCTCCGG
CAGATTGATCCAGTCAAAGTGGCCATTCCACTGGAATCCGCCGACCTGGA
AG
BO12003.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:35:02
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8182-PA | 1806 | GalNAc-T1-RA | 870..1803 | 952..19 | 4626 | 99.7 | Minus |
CG8182-PB | 1806 | GalNAc-T1-RB | 870..1803 | 952..19 | 4626 | 99.7 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 03:59:42
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
GalNAc-T1-RC | 1789 | CG8182-RC | 274..1207 | 952..19 | 4644 | 99.8 | Minus |
GalNAc-T1-RB | 2677 | CG8182-RB | 1162..2095 | 952..19 | 4644 | 99.8 | Minus |
GalNAc-T1-RA | 2697 | CG8182-RA | 1182..2115 | 952..19 | 4644 | 99.8 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 03:59:39
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 15514397..15515015 | 637..19 | 3095 | 100 | Minus |
2R | 25286936 | 2R | 15513953..15514267 | 952..638 | 1549 | 99.4 | Minus |
2R | 25286936 | 2R | 16681018..16681113 | 656..751 | 195 | 80.2 | Plus |
Blast to na_te.dros performed on 2015-02-12 03:59:40 has no hits.
BO12003.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:23:05 Download gff for
BO12003.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8182-PA | 870..1806 | 16..952 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 04:53:26 Download gff for
BO12003.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8182-PB | 870..1806 | 16..952 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 22:58:52 Download gff for
BO12003.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
GalNAc-T1-RA | 1182..2115 | 19..952 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 06:58:54 Download gff for
BO12003.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
GalNAc-T1-RA | 1182..2115 | 19..952 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 06:58:54 Download gff for
BO12003.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 15513953..15514267 | 638..952 | 99 | -> | Minus |
2R | 15514397..15515015 | 19..637 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 22:58:52 Download gff for
BO12003.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 11401458..11401772 | 638..952 | 99 | -> | Minus |
arm_2R | 11401902..11402520 | 19..637 | 100 | | Minus |
BO12003.5prime Sequence
866 bp (758 high quality bases) assembled on 2006-04-18
> BO12003.5prime
GAAGTTATCAGTCGACATGCTGCCTCGGTTCCGTTCCTTTTACGGCAAAC
TGATCATCTTCATCCTAGTCGCCCTCTGCTTCATCCTCTACAGCAAGGTG
CAGCAGAATGGTTCACCAGAGGAGCCACCTGTAGCGCCACTCGTCCGGGC
GGCCGCTCTGCGAGGTCATGGGCGCGAGCGGTTCGAGGCGTATAGCGACA
GTGAGAACGAGATAGCCCGACCCGCCACCCAGTCGCCGTACGAACAAATA
ATCCAACTGGATCTTCAGAAACAGAAGGTGGGACTCGGCGAACAGGGCGT
GGCAGTGCATCTTTCCGGTGCCGCCAAGGAACGAGGCGATGAGATCTACA
AGAAGATTGCCCTCAACGAGGAGCTAAGCGAGCAGTTGACCTACAACCGG
AGTGTCGGTGACCACCGGAATCCCCTGTGCGCCAAACAGCGCTTTGATTC
CGACTCCCTGCCCACCGCCAGTGTGGTCATCATCTTCTTCAACGAACCCT
ACTCCGTGCTGCTGAGGACCGTGCACAGCACTCTGAGCACCTGCAACGAG
AAGGCCCTGAAGGAGATTATTCTGGTGGATGACGGTAGCGACAACGTGGA
ACTGGGCGCCAAGCTGGACTACTATGTTCGCACGCGGATTCCCTCGGGGA
AGGTCACCATTCTGCGTCTCAAGAACCGATTGGGTTTGATTCGTGCCCGA
TTGGCCGGAGCGCGAATCGCCACGGGGGATGTGCTCATCTTCCTGGATGC
CCATTGCGAGGGTAACATTGGCTGGTGCGAGCCACTCCTGCAGCGCATCA
AGGAGTCGCGGACTAGCGTGCTGGTGCCCATTATCGATGTCATCGATGCC
AACGACTTTCAGTACA
BO12003.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:35:03
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8182-PA | 1806 | GalNAc-T1-RA | 1..850 | 17..866 | 4250 | 100 | Plus |
CG8182-PB | 1806 | GalNAc-T1-RB | 1..850 | 17..866 | 4250 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 11:05:07
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
GalNAc-T1-RB | 2677 | CG8182-RB | 291..1142 | 15..866 | 4260 | 100 | Plus |
GalNAc-T1-RA | 2697 | CG8182-RA | 311..1162 | 15..866 | 4260 | 100 | Plus |
GalNAc-T1-RC | 1789 | CG8182-RC | 66..254 | 678..866 | 945 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 11:05:02
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 15512102..15512765 | 15..678 | 3320 | 100 | Plus |
2R | 25286936 | 2R | 15513745..15513933 | 678..866 | 945 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-11 11:05:05 has no hits.
BO12003.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:23:06 Download gff for
BO12003.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8182-PA | 1..849 | 17..865 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 04:53:28 Download gff for
BO12003.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8182-PB | 1..849 | 17..865 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-24 16:42:21 Download gff for
BO12003.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
GalNAc-T1-RA | 301..1161 | 5..865 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 12:34:31 Download gff for
BO12003.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
GalNAc-T1-RA | 301..1161 | 5..865 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 12:34:31 Download gff for
BO12003.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 15512092..15512765 | 5..678 | 99 | -> | Plus |
2R | 15513746..15513932 | 679..865 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 16:42:21 Download gff for
BO12003.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 11399597..11400270 | 5..678 | 99 | -> | Plus |
arm_2R | 11401251..11401437 | 679..865 | 100 | | Plus |
BO12003.complete Sequence
1837 bp assembled on 2008-01-17
GenBank Submission: FJ632277
> BO12003.complete
GAAGTTATCAGTCGACATGCTGCCTCGGTTCCGTTCCTTTTACGGCAAAC
TGATCATCTTCATCCTAGTCGCCCTCTGCTTCATCCTCTACAGCAAGGTG
CAGCAGAATGGTTCACCAGAGGAGCCACCTGTAGCGCCACTCGTCCGGGC
GGCCGCTCTGCGAGGTCATGGGCGCGAGCGGTTCGAGGCGTATAGCGACA
GTGAGAACGAGATAGCCCGACCCGCCACCCAGTCGCCGTACGAACAAATA
ATCCAACTGGATCTTCAGAAACAGAAGGTGGGACTCGGCGAACAGGGCGT
GGCAGTGCATCTTTCCGGTGCCGCCAAGGAACGAGGCGATGAGATCTACA
AGAAGATTGCCCTCAACGAGGAGCTAAGCGAGCAGTTGACCTACAACCGG
AGTGTCGGTGACCACCGGAATCCCCTGTGCGCCAAACAGCGCTTTGATTC
CGACTCCCTGCCCACCGCCAGTGTGGTCATCATCTTCTTCAACGAACCCT
ACTCCGTGCTGCTGAGGACCGTGCACAGCACTCTGAGCACCTGCAACGAG
AAGGCCCTGAAGGAGATTATTCTGGTGGATGACGGTAGCGACAACGTGGA
ACTGGGCGCCAAGCTGGACTACTATGTTCGCACGCGGATTCCCTCGGGGA
AGGTCACCATTCTGCGTCTCAAGAACCGATTGGGTTTGATTCGTGCCCGA
TTGGCCGGAGCGCGAATCGCCACGGGGGATGTGCTCATCTTCCTGGATGC
CCATTGCGAGGGTAACATTGGCTGGTGCGAGCCACTCCTGCAGCGCATCA
AGGAGTCGCGGACTAGCGTGCTGGTGCCCATTATCGATGTCATCGATGCC
AACGACTTTCAGTACAGCACAAATGGCTACAAATCCTTCCAGGTCGGCGG
ATTCCAGTGGAATGGCCACTTTGACTGGATCAATCTGCCGGAGCGGGAGA
AGCAGCGCCAGCGACGCGAATGCAAGCAGGAGCGGGAGATCTGTCCAGCA
TACAGTCCCACCATGGCCGGCGGACTGTTTGCCATAGATCGTCGCTACTT
CTGGGAAGTGGGCAGCTACGACGAACAAATGGACGGTTGGGGTGGTGAGA
ACCTGGAGATGTCCTTTCGCATCTGGCAGTGCGGCGGCACCATCGAGACT
ATTCCCTGCTCCCGCGTTGGACACATATTCCGCGACTTCCATCCTTACAA
ATTCCCCAACGATCGCGATACACACGGTATTAATACTGCCCGCATGGCTC
TGGTTTGGATGGATGAGTACATCAACATATTTTTCCTCAACCGGCCGGAC
CTAAAGTTCCACGCGGACATTGGAGATGTCACCCACCGAGTAATGCTGCG
CAAAAAGCTCCGCTGCAAGAGCTTCGAGTGGTACCTCAAGAACATCTATC
CGGAGAAGTTTGTGCCCACGAAGGACGTGCAGGGATGGGGTAAAGTGCAC
GCTGTGAATTCGAACATATGTCTGGACGATTTGCTGCAGAACAACGAAAA
GCCCTATAACGCCGGCTTGTACCCATGCGGCAAGGTGTTGCAGAAGTCGC
AGCTATTCTCCTTCACCAACACAAATGTCCTGCGCAACGAGCTAAGCTGT
GCAACCGTGCAGCACAGCGAGTCCCCACCGTACCGGGTCGTGATGGTGCC
CTGCATGGAGAATGATGAGTTCAACGAGCAGTGGCGATACGAGCACCAGC
ACATCATTCACAGCAACACGGGCATGTGCCTCGATCATCAGGGACTCAAA
AGCCTGGACGACGCCCAGGTGGCGCCTTGCGATCCCCACAGCGAATCCCA
ACGATGGACCATTGAACACGCAAGCTTTCTAGACCAT
BO12003.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 15:33:50
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
GalNAc-T1-RB | 1806 | CG8182-PB | 1..1803 | 17..1819 | 9015 | 100 | Plus |
GalNAc-T1-RA | 1806 | CG8182-PA | 1..1803 | 17..1819 | 9015 | 100 | Plus |
GalNAc-T1-RC | 1155 | CG8182-PC | 11..1152 | 678..1819 | 5710 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:33:52
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
GalNAc-T1-RB | 2677 | CG8182-RB | 291..2095 | 15..1819 | 9025 | 100 | Plus |
GalNAc-T1-RA | 2697 | CG8182-RA | 311..2115 | 15..1819 | 9025 | 100 | Plus |
GalNAc-T1-RC | 1789 | CG8182-RC | 66..1207 | 678..1819 | 5710 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 15:33:48
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 15512102..15512765 | 15..678 | 3320 | 100 | Plus |
2R | 25286936 | 2R | 15514397..15515015 | 1201..1819 | 3095 | 100 | Plus |
2R | 25286936 | 2R | 15513745..15514267 | 678..1200 | 2615 | 100 | Plus |
2R | 25286936 | 2R | 16681018..16681113 | 1182..1087 | 195 | 80.2 | Minus |
2R | 25286936 | 2R | 7059070..7059240 | 1183..1013 | 195 | 74.3 | Minus |
Blast to na_te.dros performed on 2014-11-27 15:33:49 has no hits.
BO12003.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 13:59:38 Download gff for
BO12003.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
GalNAc-T1-RB | 1..1806 | 17..1822 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-07-28 15:31:47 Download gff for
BO12003.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
GalNAc-T1-RB | 363..2165 | 17..1821 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:51:05 Download gff for
BO12003.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
GalNAc-T1-RA | 313..2115 | 17..1821 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 13:59:38 Download gff for
BO12003.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
GalNAc-T1-RB | 351..2165 | 5..1819 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:10:55 Download gff for
BO12003.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
GalNAc-T1-RA | 313..2115 | 17..1821 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 16:10:55 Download gff for
BO12003.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 15512104..15512765 | 17..678 | 100 | -> | Plus |
2R | 15513746..15514267 | 679..1200 | 100 | -> | Plus |
2R | 15514397..15515015 | 1201..1821 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:51:05 Download gff for
BO12003.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 11399609..11400270 | 17..678 | 100 | -> | Plus |
arm_2R | 11401251..11401772 | 679..1200 | 100 | -> | Plus |
arm_2R | 11401902..11402520 | 1201..1821 | 99 | | Plus |
BO12003.pep Sequence
Translation from 16 to 1837
> BO12003.pep
MLPRFRSFYGKLIIFILVALCFILYSKVQQNGSPEEPPVAPLVRAAALRG
HGRERFEAYSDSENEIARPATQSPYEQIIQLDLQKQKVGLGEQGVAVHLS
GAAKERGDEIYKKIALNEELSEQLTYNRSVGDHRNPLCAKQRFDSDSLPT
ASVVIIFFNEPYSVLLRTVHSTLSTCNEKALKEIILVDDGSDNVELGAKL
DYYVRTRIPSGKVTILRLKNRLGLIRARLAGARIATGDVLIFLDAHCEGN
IGWCEPLLQRIKESRTSVLVPIIDVIDANDFQYSTNGYKSFQVGGFQWNG
HFDWINLPEREKQRQRRECKQEREICPAYSPTMAGGLFAIDRRYFWEVGS
YDEQMDGWGGENLEMSFRIWQCGGTIETIPCSRVGHIFRDFHPYKFPNDR
DTHGINTARMALVWMDEYINIFFLNRPDLKFHADIGDVTHRVMLRKKLRC
KSFEWYLKNIYPEKFVPTKDVQGWGKVHAVNSNICLDDLLQNNEKPYNAG
LYPCGKVLQKSQLFSFTNTNVLRNELSCATVQHSESPPYRVVMVPCMEND
EFNEQWRYEHQHIIHSNTGMCLDHQGLKSLDDAQVAPCDPHSESQRWTIE
HASFLDH
BO12003.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 02:27:05
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
GalNAc-T1-PB | 601 | CG8182-PB | 1..601 | 1..601 | 3227 | 100 | Plus |
GalNAc-T1-PA | 601 | CG8182-PA | 1..601 | 1..601 | 3227 | 100 | Plus |
GalNAc-T1-PC | 384 | CG8182-PC | 4..384 | 221..601 | 2112 | 100 | Plus |
pgant5-PA | 630 | CG31651-PA | 122..622 | 83..600 | 947 | 42 | Plus |
pgant5-PB | 630 | CG31651-PB | 122..622 | 83..600 | 938 | 41.2 | Plus |