Clone BO12003 Report

Search the DGRC for BO12003

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:120
Well:3
Vector:pDNR-Dual
Associated Gene/TranscriptGalNAc-T1-RA
Protein status:BO12003.pep:
Sequenced Size:1837

Clone Sequence Records

BO12003.3prime Sequence

952 bp (844 high quality bases) assembled on 2006-04-20

> BO12003.3prime
ATGGTCTAGAAAGCTTGCGTGTTCAATGGTCCATCGTTGGGATTCGCTGT
GGGGATCGCAAGGCGCCACCTGGGCGTCGTCCAGGCTTTTGAGTCCCTGA
TGATCGAGGCACATGCCCGTGTTGCTGTGAATGATGTGCTGGTGCTCGTA
TCGCCACTGCTCGTTGAACTCATCATTCTCCATGCAGGGCACCATCACGA
CCCGGTACGGTGGGGACTCGCTGTGCTGCACGGTTGCACAGCTTAGCTCG
TTGCGCAGGACATTTGTGTTGGTGAAGGAGAATAGCTGCGACTTCTGCAA
CACCTTGCCGCATGGGTACAAGCCGGCGTTATAGGGCTTTTCGTTGTTCT
GCAGCAAATCGTCCAGACATATGTTCGAATTCACAGCGTGCACTTTACCC
CATCCCTGCACGTCCTTCGTGGGCACAAACTTCTCCGGATAGATGTTCTT
GAGGTACCACTCGAAGCTCTTGCAGCGGAGCTTTTTGCGCAGCATTACTC
GGTGGGTGACATCTCCAATGTCCGCGTGGAACTTTAGGTCCGGCCGGTTG
AGGAAAAATATGTTGATGTACTCATCCATCCAAACCAGAGCCATGCGGGC
AGTATTAATACCGTGTGTATCGCGATCGTTGGGGAATTTGTAAGGATGGA
AGTCGCGGAATATGTGTCCAACGCGGGAGCAGGGAATAGTCTCGATGGTG
CCGCCGCACTGCCAGATGCGAAAGGACATCTCCAGGTTCTCACCACCCCA
ACCGTCCATTTGTTCGTCGTAGCTGCCCACTTCCCAGAAGTAGCGACGAT
CTATGGCNAACAGTCCGCCGGCCATGGTGGGACTGTATGCTGGACAGATC
TCCCGCTCCTGCTTGCATTCGCGTCGCTGGCGCTGCTTCCCCCGCTCCGG
CAGATTGATCCAGTCAAAGTGGCCATTCCACTGGAATCCGCCGACCTGGA
AG

BO12003.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:35:02
Subject Length Description Subject Range Query Range Score Percent Strand
CG8182-PA 1806 GalNAc-T1-RA 870..1803 952..19 4626 99.7 Minus
CG8182-PB 1806 GalNAc-T1-RB 870..1803 952..19 4626 99.7 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 03:59:42
Subject Length Description Subject Range Query Range Score Percent Strand
GalNAc-T1-RC 1789 CG8182-RC 274..1207 952..19 4644 99.8 Minus
GalNAc-T1-RB 2677 CG8182-RB 1162..2095 952..19 4644 99.8 Minus
GalNAc-T1-RA 2697 CG8182-RA 1182..2115 952..19 4644 99.8 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 03:59:39
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 15514397..15515015 637..19 3095 100 Minus
2R 25286936 2R 15513953..15514267 952..638 1549 99.4 Minus
2R 25286936 2R 16681018..16681113 656..751 195 80.2 Plus
Blast to na_te.dros performed on 2015-02-12 03:59:40 has no hits.

BO12003.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:23:05 Download gff for BO12003.3prime
Subject Subject Range Query Range Percent Splice Strand
CG8182-PA 870..1806 16..952 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 04:53:26 Download gff for BO12003.3prime
Subject Subject Range Query Range Percent Splice Strand
CG8182-PB 870..1806 16..952 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 22:58:52 Download gff for BO12003.3prime
Subject Subject Range Query Range Percent Splice Strand
GalNAc-T1-RA 1182..2115 19..952 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 06:58:54 Download gff for BO12003.3prime
Subject Subject Range Query Range Percent Splice Strand
GalNAc-T1-RA 1182..2115 19..952 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 06:58:54 Download gff for BO12003.3prime
Subject Subject Range Query Range Percent Splice Strand
2R 15513953..15514267 638..952 99 -> Minus
2R 15514397..15515015 19..637 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 22:58:52 Download gff for BO12003.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 11401458..11401772 638..952 99 -> Minus
arm_2R 11401902..11402520 19..637 100   Minus

BO12003.5prime Sequence

866 bp (758 high quality bases) assembled on 2006-04-18

> BO12003.5prime
GAAGTTATCAGTCGACATGCTGCCTCGGTTCCGTTCCTTTTACGGCAAAC
TGATCATCTTCATCCTAGTCGCCCTCTGCTTCATCCTCTACAGCAAGGTG
CAGCAGAATGGTTCACCAGAGGAGCCACCTGTAGCGCCACTCGTCCGGGC
GGCCGCTCTGCGAGGTCATGGGCGCGAGCGGTTCGAGGCGTATAGCGACA
GTGAGAACGAGATAGCCCGACCCGCCACCCAGTCGCCGTACGAACAAATA
ATCCAACTGGATCTTCAGAAACAGAAGGTGGGACTCGGCGAACAGGGCGT
GGCAGTGCATCTTTCCGGTGCCGCCAAGGAACGAGGCGATGAGATCTACA
AGAAGATTGCCCTCAACGAGGAGCTAAGCGAGCAGTTGACCTACAACCGG
AGTGTCGGTGACCACCGGAATCCCCTGTGCGCCAAACAGCGCTTTGATTC
CGACTCCCTGCCCACCGCCAGTGTGGTCATCATCTTCTTCAACGAACCCT
ACTCCGTGCTGCTGAGGACCGTGCACAGCACTCTGAGCACCTGCAACGAG
AAGGCCCTGAAGGAGATTATTCTGGTGGATGACGGTAGCGACAACGTGGA
ACTGGGCGCCAAGCTGGACTACTATGTTCGCACGCGGATTCCCTCGGGGA
AGGTCACCATTCTGCGTCTCAAGAACCGATTGGGTTTGATTCGTGCCCGA
TTGGCCGGAGCGCGAATCGCCACGGGGGATGTGCTCATCTTCCTGGATGC
CCATTGCGAGGGTAACATTGGCTGGTGCGAGCCACTCCTGCAGCGCATCA
AGGAGTCGCGGACTAGCGTGCTGGTGCCCATTATCGATGTCATCGATGCC
AACGACTTTCAGTACA

BO12003.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:35:03
Subject Length Description Subject Range Query Range Score Percent Strand
CG8182-PA 1806 GalNAc-T1-RA 1..850 17..866 4250 100 Plus
CG8182-PB 1806 GalNAc-T1-RB 1..850 17..866 4250 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 11:05:07
Subject Length Description Subject Range Query Range Score Percent Strand
GalNAc-T1-RB 2677 CG8182-RB 291..1142 15..866 4260 100 Plus
GalNAc-T1-RA 2697 CG8182-RA 311..1162 15..866 4260 100 Plus
GalNAc-T1-RC 1789 CG8182-RC 66..254 678..866 945 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 11:05:02
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 15512102..15512765 15..678 3320 100 Plus
2R 25286936 2R 15513745..15513933 678..866 945 100 Plus
Blast to na_te.dros performed on 2015-02-11 11:05:05 has no hits.

BO12003.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:23:06 Download gff for BO12003.5prime
Subject Subject Range Query Range Percent Splice Strand
CG8182-PA 1..849 17..865 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 04:53:28 Download gff for BO12003.5prime
Subject Subject Range Query Range Percent Splice Strand
CG8182-PB 1..849 17..865 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-24 16:42:21 Download gff for BO12003.5prime
Subject Subject Range Query Range Percent Splice Strand
GalNAc-T1-RA 301..1161 5..865 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 12:34:31 Download gff for BO12003.5prime
Subject Subject Range Query Range Percent Splice Strand
GalNAc-T1-RA 301..1161 5..865 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 12:34:31 Download gff for BO12003.5prime
Subject Subject Range Query Range Percent Splice Strand
2R 15512092..15512765 5..678 99 -> Plus
2R 15513746..15513932 679..865 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 16:42:21 Download gff for BO12003.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 11399597..11400270 5..678 99 -> Plus
arm_2R 11401251..11401437 679..865 100   Plus

BO12003.complete Sequence

1837 bp assembled on 2008-01-17

GenBank Submission: FJ632277

> BO12003.complete
GAAGTTATCAGTCGACATGCTGCCTCGGTTCCGTTCCTTTTACGGCAAAC
TGATCATCTTCATCCTAGTCGCCCTCTGCTTCATCCTCTACAGCAAGGTG
CAGCAGAATGGTTCACCAGAGGAGCCACCTGTAGCGCCACTCGTCCGGGC
GGCCGCTCTGCGAGGTCATGGGCGCGAGCGGTTCGAGGCGTATAGCGACA
GTGAGAACGAGATAGCCCGACCCGCCACCCAGTCGCCGTACGAACAAATA
ATCCAACTGGATCTTCAGAAACAGAAGGTGGGACTCGGCGAACAGGGCGT
GGCAGTGCATCTTTCCGGTGCCGCCAAGGAACGAGGCGATGAGATCTACA
AGAAGATTGCCCTCAACGAGGAGCTAAGCGAGCAGTTGACCTACAACCGG
AGTGTCGGTGACCACCGGAATCCCCTGTGCGCCAAACAGCGCTTTGATTC
CGACTCCCTGCCCACCGCCAGTGTGGTCATCATCTTCTTCAACGAACCCT
ACTCCGTGCTGCTGAGGACCGTGCACAGCACTCTGAGCACCTGCAACGAG
AAGGCCCTGAAGGAGATTATTCTGGTGGATGACGGTAGCGACAACGTGGA
ACTGGGCGCCAAGCTGGACTACTATGTTCGCACGCGGATTCCCTCGGGGA
AGGTCACCATTCTGCGTCTCAAGAACCGATTGGGTTTGATTCGTGCCCGA
TTGGCCGGAGCGCGAATCGCCACGGGGGATGTGCTCATCTTCCTGGATGC
CCATTGCGAGGGTAACATTGGCTGGTGCGAGCCACTCCTGCAGCGCATCA
AGGAGTCGCGGACTAGCGTGCTGGTGCCCATTATCGATGTCATCGATGCC
AACGACTTTCAGTACAGCACAAATGGCTACAAATCCTTCCAGGTCGGCGG
ATTCCAGTGGAATGGCCACTTTGACTGGATCAATCTGCCGGAGCGGGAGA
AGCAGCGCCAGCGACGCGAATGCAAGCAGGAGCGGGAGATCTGTCCAGCA
TACAGTCCCACCATGGCCGGCGGACTGTTTGCCATAGATCGTCGCTACTT
CTGGGAAGTGGGCAGCTACGACGAACAAATGGACGGTTGGGGTGGTGAGA
ACCTGGAGATGTCCTTTCGCATCTGGCAGTGCGGCGGCACCATCGAGACT
ATTCCCTGCTCCCGCGTTGGACACATATTCCGCGACTTCCATCCTTACAA
ATTCCCCAACGATCGCGATACACACGGTATTAATACTGCCCGCATGGCTC
TGGTTTGGATGGATGAGTACATCAACATATTTTTCCTCAACCGGCCGGAC
CTAAAGTTCCACGCGGACATTGGAGATGTCACCCACCGAGTAATGCTGCG
CAAAAAGCTCCGCTGCAAGAGCTTCGAGTGGTACCTCAAGAACATCTATC
CGGAGAAGTTTGTGCCCACGAAGGACGTGCAGGGATGGGGTAAAGTGCAC
GCTGTGAATTCGAACATATGTCTGGACGATTTGCTGCAGAACAACGAAAA
GCCCTATAACGCCGGCTTGTACCCATGCGGCAAGGTGTTGCAGAAGTCGC
AGCTATTCTCCTTCACCAACACAAATGTCCTGCGCAACGAGCTAAGCTGT
GCAACCGTGCAGCACAGCGAGTCCCCACCGTACCGGGTCGTGATGGTGCC
CTGCATGGAGAATGATGAGTTCAACGAGCAGTGGCGATACGAGCACCAGC
ACATCATTCACAGCAACACGGGCATGTGCCTCGATCATCAGGGACTCAAA
AGCCTGGACGACGCCCAGGTGGCGCCTTGCGATCCCCACAGCGAATCCCA
ACGATGGACCATTGAACACGCAAGCTTTCTAGACCAT

BO12003.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 15:33:50
Subject Length Description Subject Range Query Range Score Percent Strand
GalNAc-T1-RB 1806 CG8182-PB 1..1803 17..1819 9015 100 Plus
GalNAc-T1-RA 1806 CG8182-PA 1..1803 17..1819 9015 100 Plus
GalNAc-T1-RC 1155 CG8182-PC 11..1152 678..1819 5710 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:33:52
Subject Length Description Subject Range Query Range Score Percent Strand
GalNAc-T1-RB 2677 CG8182-RB 291..2095 15..1819 9025 100 Plus
GalNAc-T1-RA 2697 CG8182-RA 311..2115 15..1819 9025 100 Plus
GalNAc-T1-RC 1789 CG8182-RC 66..1207 678..1819 5710 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 15:33:48
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 15512102..15512765 15..678 3320 100 Plus
2R 25286936 2R 15514397..15515015 1201..1819 3095 100 Plus
2R 25286936 2R 15513745..15514267 678..1200 2615 100 Plus
2R 25286936 2R 16681018..16681113 1182..1087 195 80.2 Minus
2R 25286936 2R 7059070..7059240 1183..1013 195 74.3 Minus
Blast to na_te.dros performed on 2014-11-27 15:33:49 has no hits.

BO12003.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 13:59:38 Download gff for BO12003.complete
Subject Subject Range Query Range Percent Splice Strand
GalNAc-T1-RB 1..1806 17..1822 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-07-28 15:31:47 Download gff for BO12003.complete
Subject Subject Range Query Range Percent Splice Strand
GalNAc-T1-RB 363..2165 17..1821 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:51:05 Download gff for BO12003.complete
Subject Subject Range Query Range Percent Splice Strand
GalNAc-T1-RA 313..2115 17..1821 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 13:59:38 Download gff for BO12003.complete
Subject Subject Range Query Range Percent Splice Strand
GalNAc-T1-RB 351..2165 5..1819 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:10:55 Download gff for BO12003.complete
Subject Subject Range Query Range Percent Splice Strand
GalNAc-T1-RA 313..2115 17..1821 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 16:10:55 Download gff for BO12003.complete
Subject Subject Range Query Range Percent Splice Strand
2R 15512104..15512765 17..678 100 -> Plus
2R 15513746..15514267 679..1200 100 -> Plus
2R 15514397..15515015 1201..1821 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:51:05 Download gff for BO12003.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 11399609..11400270 17..678 100 -> Plus
arm_2R 11401251..11401772 679..1200 100 -> Plus
arm_2R 11401902..11402520 1201..1821 99   Plus

BO12003.pep Sequence

Translation from 16 to 1837

> BO12003.pep
MLPRFRSFYGKLIIFILVALCFILYSKVQQNGSPEEPPVAPLVRAAALRG
HGRERFEAYSDSENEIARPATQSPYEQIIQLDLQKQKVGLGEQGVAVHLS
GAAKERGDEIYKKIALNEELSEQLTYNRSVGDHRNPLCAKQRFDSDSLPT
ASVVIIFFNEPYSVLLRTVHSTLSTCNEKALKEIILVDDGSDNVELGAKL
DYYVRTRIPSGKVTILRLKNRLGLIRARLAGARIATGDVLIFLDAHCEGN
IGWCEPLLQRIKESRTSVLVPIIDVIDANDFQYSTNGYKSFQVGGFQWNG
HFDWINLPEREKQRQRRECKQEREICPAYSPTMAGGLFAIDRRYFWEVGS
YDEQMDGWGGENLEMSFRIWQCGGTIETIPCSRVGHIFRDFHPYKFPNDR
DTHGINTARMALVWMDEYINIFFLNRPDLKFHADIGDVTHRVMLRKKLRC
KSFEWYLKNIYPEKFVPTKDVQGWGKVHAVNSNICLDDLLQNNEKPYNAG
LYPCGKVLQKSQLFSFTNTNVLRNELSCATVQHSESPPYRVVMVPCMEND
EFNEQWRYEHQHIIHSNTGMCLDHQGLKSLDDAQVAPCDPHSESQRWTIE
HASFLDH

BO12003.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 02:27:05
Subject Length Description Subject Range Query Range Score Percent Strand
GalNAc-T1-PB 601 CG8182-PB 1..601 1..601 3227 100 Plus
GalNAc-T1-PA 601 CG8182-PA 1..601 1..601 3227 100 Plus
GalNAc-T1-PC 384 CG8182-PC 4..384 221..601 2112 100 Plus
pgant5-PA 630 CG31651-PA 122..622 83..600 947 42 Plus
pgant5-PB 630 CG31651-PB 122..622 83..600 938 41.2 Plus