Clone Sequence Records
BO12005.3prime Sequence
741 bp (719 high quality bases) assembled on 2006-04-20
> BO12005.3prime
ATGGTCTAGAAAGCTTGCAGCCATTTGAGAGTACGAGGAATACAGCTTGT
AGTTGCGACGTCGGTAGTAGATCATGAGGCCATAGCTGGCGAACAGCAGC
GCAATTACGATTAAAATGAGAATGCCCGTCGCAGTTCCAAGATTGGCTTC
CTCATAAGTCATCATCATCGTGGATAGCTTGCACTCGCGCTCCCAATCTA
CGGGCAAAACGTCCTCGTAGATGTTCATAAGTTTGGTCAGCGGACAGGAA
GGCCCACAACCAGGTATGTCCAGAGGCAGGGGTTCAGCTGTGGTGTTCTT
GTAGAAAATAGAGACCAACGGGGTGTTGGTCTCATCCACACGCAACTCCA
TCATTATGCACGCCGTGTAGGGAGGACTGTGCAGCTCAAATAATTTCAGC
GCATTCAAAACGCTGGCTACCGTGGTGTCATGAGCACTGTAGACCCACAT
CGAACGATCTGGTTTTAGGCTCCCGGAGGATTTCTCTTTAAACCGCTGGA
ATATGTCCTTTAGCAAAGGCCCCGCCTTCAGTCTCGCCAGCTTTCGCGTA
TAAGAGCTGATGGCGAAAGCGAAATTCGATACATACGTGAGCTCCTCTCT
CCCATAAACCATTTTAGTCCATTTTGGCAGTGTCATGTTGTACAGATTCT
CAATGAACAAGGTGTTATTCAAATACTGGGCATCAATGAAGGTCTTCACG
GGGCGTCCGCCTTTTTCGCTCAAATAAGCAAACAGATTTCG
BO12005.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:35:05
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7899-PB | 1368 | Acph-1-RB | 643..1365 | 741..19 | 3615 | 100 | Minus |
CG7899-PA | 1317 | Acph-1-RA | 592..1314 | 741..19 | 3615 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:53:36
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Acph-1-RA | 1944 | CG7899-RA | 779..1501 | 741..19 | 3615 | 100 | Minus |
Acph-1-RB | 1889 | CG7899-RB | 724..1446 | 741..19 | 3615 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 18:53:34
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 29992083..29992439 | 385..741 | 1785 | 100 | Plus |
3R | 32079331 | 3R | 29991753..29992014 | 125..386 | 1310 | 100 | Plus |
3R | 32079331 | 3R | 29991587..29991694 | 19..126 | 540 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-10 18:53:35 has no hits.
BO12005.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:23:09 Download gff for
BO12005.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7899-PB | 643..1368 | 18..741 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 04:53:32 Download gff for
BO12005.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7899-PA | 592..1317 | 18..741 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-20 18:51:09 Download gff for
BO12005.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Acph-1-RB | 724..1456 | 11..741 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 21:12:29 Download gff for
BO12005.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Acph-1-RB | 724..1456 | 11..741 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 21:12:29 Download gff for
BO12005.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 29991577..29991693 | 11..125 | 96 | <- | Plus |
3R | 29991754..29992012 | 126..384 | 100 | <- | Plus |
3R | 29992083..29992439 | 385..741 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-20 18:51:09 Download gff for
BO12005.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 25817299..25817415 | 11..125 | 96 | <- | Plus |
arm_3R | 25817476..25817734 | 126..384 | 100 | <- | Plus |
arm_3R | 25817805..25818161 | 385..741 | 100 | | Plus |
BO12005.5prime Sequence
856 bp (738 high quality bases) assembled on 2006-04-18
> BO12005.5prime
GAAGTTATCAGTCGACATGTGGAACCACCCAAGCCAGCGCTGGCTCATCT
TGATCTGCGTTATATGTTTGCTGTCTTTTGCGCTGGCCAATTCGCTTCAT
GGCTATGCTAATGCTGAAGGTCATCCAGTGGAGATTTCGGCCACATTGCC
AGGCCAGCTGAAGTTTGTGCATGTCATATATCGCCACGGCGACAGAACGC
CCGTGGATCCCTATCCCACGGACCCCTGGGGCGACAGGAAGTTCTGGCCC
ACCGGCTGGGGAGATTTGACCAATTTGGGCAAGCAAGAGCACTACGACCT
GGGAAAATGGCTGCGGAATCGCTATTCAAACCTCCTACCGCCTATATACT
CCAACGAGAACATCTACGTTCAGTCCACCGACGTGGATCGCACATTGATG
AGTGCCCAGTCGAATCTGGCTGGTCTCTACGAGCCGCAAGGGGAAGACAT
CTGGAACACGGACATCAACTGGCAACCCATACCCATTCACACCTCGCCCG
AGAGGGAGGATCCCATACTGGCCGCTAAGGCACCTTGTCCTGCCTATGAC
TATGAGCTGGCCAGCCTGGAATCATCGCCAGAATTCAAGGCCTTGACCGA
AAAACACCGAAATCTGTTTGCTTATTTGAGCGAAAAAGGCGGACGCCCCG
TGAAGACCTTCATTGATGCCCAGTATTTGAATAACACCTTGTTCATTGAG
AATCTGTACAACATGACACTGCCAAAATGGACTAAAATGGTTTATGGGAG
AGAGGAGCTCACGTATGTATCGAATTTCGCTTTCGCCATCAGCTCTTATA
CGCGAAAGCTGGCGAGACTGAAGGCGGGGCCTTTGCTAAAGGACATATTC
CAGCGG
BO12005.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:35:06
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7899-PB | 1368 | Acph-1-RB | 52..891 | 17..856 | 4200 | 100 | Plus |
CG7899-PA | 1317 | Acph-1-RA | 1..840 | 17..856 | 4200 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 01:58:46
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Acph-1-RA | 1944 | CG7899-RA | 188..1027 | 17..856 | 4200 | 100 | Plus |
Acph-1-RB | 1889 | CG7899-RB | 133..972 | 17..856 | 4200 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 01:58:40
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 29992191..29992772 | 856..275 | 2910 | 100 | Minus |
3R | 32079331 | 3R | 29992986..29993144 | 175..17 | 795 | 100 | Minus |
3R | 32079331 | 3R | 29992829..29992927 | 274..176 | 495 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-13 01:58:43 has no hits.
BO12005.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:23:10 Download gff for
BO12005.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7899-PB | 45..891 | 8..856 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 04:53:33 Download gff for
BO12005.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7899-PA | 1..840 | 17..856 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 12:09:21 Download gff for
BO12005.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Acph-1-RB | 126..972 | 8..856 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 03:36:47 Download gff for
BO12005.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Acph-1-RB | 126..972 | 8..856 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 03:36:47 Download gff for
BO12005.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 29992191..29992772 | 275..856 | 100 | <- | Minus |
3R | 29992829..29992927 | 176..274 | 100 | <- | Minus |
3R | 29992986..29993151 | 8..175 | 97 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 12:09:21 Download gff for
BO12005.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 25817913..25818494 | 275..856 | 100 | <- | Minus |
arm_3R | 25818551..25818649 | 176..274 | 100 | <- | Minus |
arm_3R | 25818708..25818873 | 8..175 | 97 | | Minus |
BO12005.complete Sequence
1348 bp assembled on 2006-10-11
GenBank Submission: FJ632278
> BO12005.complete
GAAGTTATCAGTCGACATGTGGAACCACCCAAGCCAGCGCTGGCTCATCT
TGATCTGCGTTATATGTTTGCTGTCTTTTGCGCTGGCCAATTCGCTTCAT
GGCTATGCTAATGCTGAAGGTCATCCAGTGGAGATTTCGGCCACATTGCC
AGGCCAGCTGAAGTTTGTGCATGTCATATATCGCCACGGCGACAGAACGC
CCGTGGATCCCTATCCCACGGACCCCTGGGGCGACAGGAAGTTCTGGCCC
ACCGGCTGGGGAGATTTGACCAATTTGGGCAAGCAAGAGCACTACGACCT
GGGAAAATGGCTGCGGAATCGCTATTCAAACCTCCTACCGCCTATATACT
CCAACGAGAACATCTACGTTCAGTCCACCGACGTGGATCGCACATTGATG
AGTGCCCAGTCGAATCTGGCTGGTCTCTACGAGCCGCAAGGGGAAGACAT
CTGGAACACGGACATCAACTGGCAACCCATACCCATTCACACCTCGCCCG
AGAGGGAGGATCCCATACTGGCCGCTAAGGCACCTTGTCCTGCCTATGAC
TATGAGCTGGCCAGCCTGGAATCATCGCCAGAATTCAAGGCCTTGACCGA
AAAACACCGAAATCTGTTTGCTTATTTGAGCGAAAAAGGCGGACGCCCCG
TGAAGACCTTCATTGATGCCCAGTATTTGAATAACACCTTGTTCATTGAG
AATCTGTACAACATGACACTGCCAAAATGGACTAAAATGGTTTATGGGAG
AGAGGAGCTCACGTATGTATCGAATTTCGCTTTCGCCATCAGCTCTTATA
CGCGAAAGCTGGCGAGACTGAAGGCGGGGCCTTTGCTAAAGGACATATTC
CAGCGGTTTAAAGAGAAATCCTCCGGGAGCCTAAAACCAGATCGTTCGAT
GTGGGTCTACAGTGCTCATGACACCACGGTAGCCAGCGTTTTGAATGCGC
TGAAATTATTTGAGCTGCACAGTCCTCCCTACACGGCGTGCATAATGATG
GAGTTGCGTGTGGATGAGACCAACACCCCGTTGGTCTCTATTTTCTACAA
GAACACCACAGCTGAACCCCTGCCTCTGGACATACCTGGTTGTGGGCCTT
CCTGTCCGCTGACCAAACTTATGAACATCTACGAGGACGTTTTGCCCGTA
GATTGGGAGCGCGAGTGCAAGCTATCCACGATGATGATGACTTATGAGGA
AGCCAATCTTGGAACTGCGACGGGCATTCTCATTTTAATCGTAATTGCGC
TGCTGTTCGCCAGCTATGGCCTCATGATCTACTACCGACGTCGCAACTAC
AAGCTGTATTCCTCGTACTCTCAAATGGCTGCAAGCTTTCTAGACCAT
BO12005.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 14:02:39
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Acph-1-RA | 1317 | CG7899-PA | 1..1314 | 17..1330 | 6570 | 100 | Plus |
Acph-1-RB | 1368 | CG7899-PB | 52..1365 | 17..1330 | 6570 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:02:40
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Acph-1-RA | 1944 | CG7899-RA | 188..1501 | 17..1330 | 6570 | 100 | Plus |
Acph-1-RB | 1889 | CG7899-RB | 133..1446 | 17..1330 | 6570 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 14:02:37
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 29992083..29992772 | 964..275 | 3450 | 100 | Minus |
3R | 32079331 | 3R | 29991753..29992014 | 1224..963 | 1310 | 100 | Minus |
3R | 32079331 | 3R | 29992986..29993144 | 175..17 | 795 | 100 | Minus |
3R | 32079331 | 3R | 29991587..29991694 | 1330..1223 | 540 | 100 | Minus |
3R | 32079331 | 3R | 29992829..29992927 | 274..176 | 495 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 14:02:38 has no hits.
BO12005.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:03:30 Download gff for
BO12005.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Acph-1-RA | 1..1317 | 17..1331 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:17:14 Download gff for
BO12005.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Acph-1-RA | 178..1508 | 8..1338 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:32:02 Download gff for
BO12005.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Acph-1-RB | 133..1446 | 17..1332 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:03:31 Download gff for
BO12005.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Acph-1-RA | 178..1508 | 8..1338 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:02:00 Download gff for
BO12005.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Acph-1-RB | 133..1446 | 17..1332 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 15:02:00 Download gff for
BO12005.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 29991585..29991693 | 1224..1332 | 98 | <- | Minus |
3R | 29991754..29992012 | 965..1223 | 100 | <- | Minus |
3R | 29992083..29992772 | 275..964 | 100 | <- | Minus |
3R | 29992829..29992927 | 176..274 | 100 | <- | Minus |
3R | 29992986..29993144 | 17..175 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:32:02 Download gff for
BO12005.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 25817307..25817415 | 1224..1332 | 98 | <- | Minus |
arm_3R | 25817476..25817734 | 965..1223 | 100 | <- | Minus |
arm_3R | 25817805..25818494 | 275..964 | 100 | <- | Minus |
arm_3R | 25818551..25818649 | 176..274 | 100 | <- | Minus |
arm_3R | 25818708..25818866 | 17..175 | 100 | | Minus |
BO12005.pep Sequence
Translation from 16 to 1348
> BO12005.pep
MWNHPSQRWLILICVICLLSFALANSLHGYANAEGHPVEISATLPGQLKF
VHVIYRHGDRTPVDPYPTDPWGDRKFWPTGWGDLTNLGKQEHYDLGKWLR
NRYSNLLPPIYSNENIYVQSTDVDRTLMSAQSNLAGLYEPQGEDIWNTDI
NWQPIPIHTSPEREDPILAAKAPCPAYDYELASLESSPEFKALTEKHRNL
FAYLSEKGGRPVKTFIDAQYLNNTLFIENLYNMTLPKWTKMVYGREELTY
VSNFAFAISSYTRKLARLKAGPLLKDIFQRFKEKSSGSLKPDRSMWVYSA
HDTTVASVLNALKLFELHSPPYTACIMMELRVDETNTPLVSIFYKNTTAE
PLPLDIPGCGPSCPLTKLMNIYEDVLPVDWERECKLSTMMMTYEEANLGT
ATGILILIVIALLFASYGLMIYYRRRNYKLYSSYSQMAASFLDH
BO12005.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 02:22:39
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Acph-1-PA | 438 | CG7899-PA | 1..438 | 1..438 | 2353 | 100 | Plus |
Acph-1-PB | 455 | CG7899-PB | 18..455 | 1..438 | 2353 | 100 | Plus |
CG9449-PK | 391 | CG9449-PK | 36..370 | 48..379 | 658 | 38.4 | Plus |
CG9449-PH | 404 | CG9449-PH | 49..383 | 48..379 | 658 | 38.4 | Plus |
CG9449-PG | 404 | CG9449-PG | 49..383 | 48..379 | 658 | 38.4 | Plus |