Clone BO12005 Report

Search the DGRC for BO12005

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:120
Well:5
Vector:pDNR-Dual
Associated Gene/TranscriptAcph-1-RA
Protein status:BO12005.pep: validated not full length
Sequenced Size:1348

Clone Sequence Records

BO12005.3prime Sequence

741 bp (719 high quality bases) assembled on 2006-04-20

> BO12005.3prime
ATGGTCTAGAAAGCTTGCAGCCATTTGAGAGTACGAGGAATACAGCTTGT
AGTTGCGACGTCGGTAGTAGATCATGAGGCCATAGCTGGCGAACAGCAGC
GCAATTACGATTAAAATGAGAATGCCCGTCGCAGTTCCAAGATTGGCTTC
CTCATAAGTCATCATCATCGTGGATAGCTTGCACTCGCGCTCCCAATCTA
CGGGCAAAACGTCCTCGTAGATGTTCATAAGTTTGGTCAGCGGACAGGAA
GGCCCACAACCAGGTATGTCCAGAGGCAGGGGTTCAGCTGTGGTGTTCTT
GTAGAAAATAGAGACCAACGGGGTGTTGGTCTCATCCACACGCAACTCCA
TCATTATGCACGCCGTGTAGGGAGGACTGTGCAGCTCAAATAATTTCAGC
GCATTCAAAACGCTGGCTACCGTGGTGTCATGAGCACTGTAGACCCACAT
CGAACGATCTGGTTTTAGGCTCCCGGAGGATTTCTCTTTAAACCGCTGGA
ATATGTCCTTTAGCAAAGGCCCCGCCTTCAGTCTCGCCAGCTTTCGCGTA
TAAGAGCTGATGGCGAAAGCGAAATTCGATACATACGTGAGCTCCTCTCT
CCCATAAACCATTTTAGTCCATTTTGGCAGTGTCATGTTGTACAGATTCT
CAATGAACAAGGTGTTATTCAAATACTGGGCATCAATGAAGGTCTTCACG
GGGCGTCCGCCTTTTTCGCTCAAATAAGCAAACAGATTTCG

BO12005.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:35:05
Subject Length Description Subject Range Query Range Score Percent Strand
CG7899-PB 1368 Acph-1-RB 643..1365 741..19 3615 100 Minus
CG7899-PA 1317 Acph-1-RA 592..1314 741..19 3615 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:53:36
Subject Length Description Subject Range Query Range Score Percent Strand
Acph-1-RA 1944 CG7899-RA 779..1501 741..19 3615 100 Minus
Acph-1-RB 1889 CG7899-RB 724..1446 741..19 3615 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 18:53:34
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 29992083..29992439 385..741 1785 100 Plus
3R 32079331 3R 29991753..29992014 125..386 1310 100 Plus
3R 32079331 3R 29991587..29991694 19..126 540 100 Plus
Blast to na_te.dros performed on 2015-02-10 18:53:35 has no hits.

BO12005.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:23:09 Download gff for BO12005.3prime
Subject Subject Range Query Range Percent Splice Strand
CG7899-PB 643..1368 18..741 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 04:53:32 Download gff for BO12005.3prime
Subject Subject Range Query Range Percent Splice Strand
CG7899-PA 592..1317 18..741 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-20 18:51:09 Download gff for BO12005.3prime
Subject Subject Range Query Range Percent Splice Strand
Acph-1-RB 724..1456 11..741 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 21:12:29 Download gff for BO12005.3prime
Subject Subject Range Query Range Percent Splice Strand
Acph-1-RB 724..1456 11..741 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 21:12:29 Download gff for BO12005.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 29991577..29991693 11..125 96 <- Plus
3R 29991754..29992012 126..384 100 <- Plus
3R 29992083..29992439 385..741 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-20 18:51:09 Download gff for BO12005.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 25817299..25817415 11..125 96 <- Plus
arm_3R 25817476..25817734 126..384 100 <- Plus
arm_3R 25817805..25818161 385..741 100   Plus

BO12005.5prime Sequence

856 bp (738 high quality bases) assembled on 2006-04-18

> BO12005.5prime
GAAGTTATCAGTCGACATGTGGAACCACCCAAGCCAGCGCTGGCTCATCT
TGATCTGCGTTATATGTTTGCTGTCTTTTGCGCTGGCCAATTCGCTTCAT
GGCTATGCTAATGCTGAAGGTCATCCAGTGGAGATTTCGGCCACATTGCC
AGGCCAGCTGAAGTTTGTGCATGTCATATATCGCCACGGCGACAGAACGC
CCGTGGATCCCTATCCCACGGACCCCTGGGGCGACAGGAAGTTCTGGCCC
ACCGGCTGGGGAGATTTGACCAATTTGGGCAAGCAAGAGCACTACGACCT
GGGAAAATGGCTGCGGAATCGCTATTCAAACCTCCTACCGCCTATATACT
CCAACGAGAACATCTACGTTCAGTCCACCGACGTGGATCGCACATTGATG
AGTGCCCAGTCGAATCTGGCTGGTCTCTACGAGCCGCAAGGGGAAGACAT
CTGGAACACGGACATCAACTGGCAACCCATACCCATTCACACCTCGCCCG
AGAGGGAGGATCCCATACTGGCCGCTAAGGCACCTTGTCCTGCCTATGAC
TATGAGCTGGCCAGCCTGGAATCATCGCCAGAATTCAAGGCCTTGACCGA
AAAACACCGAAATCTGTTTGCTTATTTGAGCGAAAAAGGCGGACGCCCCG
TGAAGACCTTCATTGATGCCCAGTATTTGAATAACACCTTGTTCATTGAG
AATCTGTACAACATGACACTGCCAAAATGGACTAAAATGGTTTATGGGAG
AGAGGAGCTCACGTATGTATCGAATTTCGCTTTCGCCATCAGCTCTTATA
CGCGAAAGCTGGCGAGACTGAAGGCGGGGCCTTTGCTAAAGGACATATTC
CAGCGG

BO12005.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:35:06
Subject Length Description Subject Range Query Range Score Percent Strand
CG7899-PB 1368 Acph-1-RB 52..891 17..856 4200 100 Plus
CG7899-PA 1317 Acph-1-RA 1..840 17..856 4200 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 01:58:46
Subject Length Description Subject Range Query Range Score Percent Strand
Acph-1-RA 1944 CG7899-RA 188..1027 17..856 4200 100 Plus
Acph-1-RB 1889 CG7899-RB 133..972 17..856 4200 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 01:58:40
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 29992191..29992772 856..275 2910 100 Minus
3R 32079331 3R 29992986..29993144 175..17 795 100 Minus
3R 32079331 3R 29992829..29992927 274..176 495 100 Minus
Blast to na_te.dros performed on 2015-02-13 01:58:43 has no hits.

BO12005.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:23:10 Download gff for BO12005.5prime
Subject Subject Range Query Range Percent Splice Strand
CG7899-PB 45..891 8..856 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 04:53:33 Download gff for BO12005.5prime
Subject Subject Range Query Range Percent Splice Strand
CG7899-PA 1..840 17..856 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 12:09:21 Download gff for BO12005.5prime
Subject Subject Range Query Range Percent Splice Strand
Acph-1-RB 126..972 8..856 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 03:36:47 Download gff for BO12005.5prime
Subject Subject Range Query Range Percent Splice Strand
Acph-1-RB 126..972 8..856 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 03:36:47 Download gff for BO12005.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 29992191..29992772 275..856 100 <- Minus
3R 29992829..29992927 176..274 100 <- Minus
3R 29992986..29993151 8..175 97   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 12:09:21 Download gff for BO12005.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 25817913..25818494 275..856 100 <- Minus
arm_3R 25818551..25818649 176..274 100 <- Minus
arm_3R 25818708..25818873 8..175 97   Minus

BO12005.complete Sequence

1348 bp assembled on 2006-10-11

GenBank Submission: FJ632278

> BO12005.complete
GAAGTTATCAGTCGACATGTGGAACCACCCAAGCCAGCGCTGGCTCATCT
TGATCTGCGTTATATGTTTGCTGTCTTTTGCGCTGGCCAATTCGCTTCAT
GGCTATGCTAATGCTGAAGGTCATCCAGTGGAGATTTCGGCCACATTGCC
AGGCCAGCTGAAGTTTGTGCATGTCATATATCGCCACGGCGACAGAACGC
CCGTGGATCCCTATCCCACGGACCCCTGGGGCGACAGGAAGTTCTGGCCC
ACCGGCTGGGGAGATTTGACCAATTTGGGCAAGCAAGAGCACTACGACCT
GGGAAAATGGCTGCGGAATCGCTATTCAAACCTCCTACCGCCTATATACT
CCAACGAGAACATCTACGTTCAGTCCACCGACGTGGATCGCACATTGATG
AGTGCCCAGTCGAATCTGGCTGGTCTCTACGAGCCGCAAGGGGAAGACAT
CTGGAACACGGACATCAACTGGCAACCCATACCCATTCACACCTCGCCCG
AGAGGGAGGATCCCATACTGGCCGCTAAGGCACCTTGTCCTGCCTATGAC
TATGAGCTGGCCAGCCTGGAATCATCGCCAGAATTCAAGGCCTTGACCGA
AAAACACCGAAATCTGTTTGCTTATTTGAGCGAAAAAGGCGGACGCCCCG
TGAAGACCTTCATTGATGCCCAGTATTTGAATAACACCTTGTTCATTGAG
AATCTGTACAACATGACACTGCCAAAATGGACTAAAATGGTTTATGGGAG
AGAGGAGCTCACGTATGTATCGAATTTCGCTTTCGCCATCAGCTCTTATA
CGCGAAAGCTGGCGAGACTGAAGGCGGGGCCTTTGCTAAAGGACATATTC
CAGCGGTTTAAAGAGAAATCCTCCGGGAGCCTAAAACCAGATCGTTCGAT
GTGGGTCTACAGTGCTCATGACACCACGGTAGCCAGCGTTTTGAATGCGC
TGAAATTATTTGAGCTGCACAGTCCTCCCTACACGGCGTGCATAATGATG
GAGTTGCGTGTGGATGAGACCAACACCCCGTTGGTCTCTATTTTCTACAA
GAACACCACAGCTGAACCCCTGCCTCTGGACATACCTGGTTGTGGGCCTT
CCTGTCCGCTGACCAAACTTATGAACATCTACGAGGACGTTTTGCCCGTA
GATTGGGAGCGCGAGTGCAAGCTATCCACGATGATGATGACTTATGAGGA
AGCCAATCTTGGAACTGCGACGGGCATTCTCATTTTAATCGTAATTGCGC
TGCTGTTCGCCAGCTATGGCCTCATGATCTACTACCGACGTCGCAACTAC
AAGCTGTATTCCTCGTACTCTCAAATGGCTGCAAGCTTTCTAGACCAT

BO12005.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 14:02:39
Subject Length Description Subject Range Query Range Score Percent Strand
Acph-1-RA 1317 CG7899-PA 1..1314 17..1330 6570 100 Plus
Acph-1-RB 1368 CG7899-PB 52..1365 17..1330 6570 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:02:40
Subject Length Description Subject Range Query Range Score Percent Strand
Acph-1-RA 1944 CG7899-RA 188..1501 17..1330 6570 100 Plus
Acph-1-RB 1889 CG7899-RB 133..1446 17..1330 6570 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 14:02:37
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 29992083..29992772 964..275 3450 100 Minus
3R 32079331 3R 29991753..29992014 1224..963 1310 100 Minus
3R 32079331 3R 29992986..29993144 175..17 795 100 Minus
3R 32079331 3R 29991587..29991694 1330..1223 540 100 Minus
3R 32079331 3R 29992829..29992927 274..176 495 100 Minus
Blast to na_te.dros performed on 2014-11-27 14:02:38 has no hits.

BO12005.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:03:30 Download gff for BO12005.complete
Subject Subject Range Query Range Percent Splice Strand
Acph-1-RA 1..1317 17..1331 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:17:14 Download gff for BO12005.complete
Subject Subject Range Query Range Percent Splice Strand
Acph-1-RA 178..1508 8..1338 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:32:02 Download gff for BO12005.complete
Subject Subject Range Query Range Percent Splice Strand
Acph-1-RB 133..1446 17..1332 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:03:31 Download gff for BO12005.complete
Subject Subject Range Query Range Percent Splice Strand
Acph-1-RA 178..1508 8..1338 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:02:00 Download gff for BO12005.complete
Subject Subject Range Query Range Percent Splice Strand
Acph-1-RB 133..1446 17..1332 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 15:02:00 Download gff for BO12005.complete
Subject Subject Range Query Range Percent Splice Strand
3R 29991585..29991693 1224..1332 98 <- Minus
3R 29991754..29992012 965..1223 100 <- Minus
3R 29992083..29992772 275..964 100 <- Minus
3R 29992829..29992927 176..274 100 <- Minus
3R 29992986..29993144 17..175 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:32:02 Download gff for BO12005.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 25817307..25817415 1224..1332 98 <- Minus
arm_3R 25817476..25817734 965..1223 100 <- Minus
arm_3R 25817805..25818494 275..964 100 <- Minus
arm_3R 25818551..25818649 176..274 100 <- Minus
arm_3R 25818708..25818866 17..175 100   Minus

BO12005.pep Sequence

Translation from 16 to 1348

> BO12005.pep
MWNHPSQRWLILICVICLLSFALANSLHGYANAEGHPVEISATLPGQLKF
VHVIYRHGDRTPVDPYPTDPWGDRKFWPTGWGDLTNLGKQEHYDLGKWLR
NRYSNLLPPIYSNENIYVQSTDVDRTLMSAQSNLAGLYEPQGEDIWNTDI
NWQPIPIHTSPEREDPILAAKAPCPAYDYELASLESSPEFKALTEKHRNL
FAYLSEKGGRPVKTFIDAQYLNNTLFIENLYNMTLPKWTKMVYGREELTY
VSNFAFAISSYTRKLARLKAGPLLKDIFQRFKEKSSGSLKPDRSMWVYSA
HDTTVASVLNALKLFELHSPPYTACIMMELRVDETNTPLVSIFYKNTTAE
PLPLDIPGCGPSCPLTKLMNIYEDVLPVDWERECKLSTMMMTYEEANLGT
ATGILILIVIALLFASYGLMIYYRRRNYKLYSSYSQMAASFLDH

BO12005.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 02:22:39
Subject Length Description Subject Range Query Range Score Percent Strand
Acph-1-PA 438 CG7899-PA 1..438 1..438 2353 100 Plus
Acph-1-PB 455 CG7899-PB 18..455 1..438 2353 100 Plus
CG9449-PK 391 CG9449-PK 36..370 48..379 658 38.4 Plus
CG9449-PH 404 CG9449-PH 49..383 48..379 658 38.4 Plus
CG9449-PG 404 CG9449-PG 49..383 48..379 658 38.4 Plus