Clone BO12007 Report

Search the DGRC for BO12007

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:120
Well:7
Vector:pDNR-Dual
Associated Gene/TranscriptRab30-RA
Protein status:BO12007.pep: validated full length
Sequenced Size:703

Clone Sequence Records

BO12007.3prime Sequence

701 bp (700 high quality bases) assembled on 2006-04-18

> BO12007.3prime
ATGGTCTAGAAAGCTTGCGCCGCCTTGACTAGAGTTGGAGCCGCCGCTGG
CGAGTCCGCCACAGCAATTGCTCTGCGCTGCCTTGGCACTGAAGCTCCCC
AGTCCGATGGAGCTGCCCTCCGACTGACGCTGGGCGGCTGCCGCTGCGGC
CGAACTACTGCCATCCTTGCTCCTTGCCTGACCAATCAATTCGGCGGCAA
TCTCGTAGAACAGACGCTCTACATTCTCTGCCTCCTTGGCGGATGTCTCC
AAGAAGTACATGTCATGCTGCTTGGCGAACTCTTCGCCAATCTGGGTGGG
TATCTCTCGATCATCCCTGTCCGTCTTGTTACCCACCAGGATTTTGAGTA
CCTTGGAGTTGGCATACTCCTGGATCTCGCGCAGCCAGTCCGGCAGGCAG
TCAAATGTGGGCTGGCAGCTGATGTCGTACACCAGGATCAAGGCGTGAGC
CGATCGATAGTAGCTTTGCGTGATGGATCGGAACCGCTCCTGGCCGGCGG
TGTCCCAGATTTGTAGCTTGATCTTCTCGCCCTCCACCTCCACGGTCTTA
ATCATGAAATCCACACCAATGGTGGCACCCTGGCCAGGTGGAAATAGACC
CTGAGTAAAGCGGCGCACTAGGCATGTTTTTCCAACACCAGCATTGCCCA
CCAGGACGATTTTGAACAGGAACTTGTAGTCCTCCATGTCGACTGATAAC
T

BO12007.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:35:08
Subject Length Description Subject Range Query Range Score Percent Strand
CG9100-PA 672 Rab30-RA 1..669 687..19 3345 100 Minus
CG9100-PB 672 Rab30-RB 1..669 687..19 3345 100 Minus
CG9100-PC 672 Rab30-RC 1..669 687..19 3345 100 Minus
CG17060-PA 615 Rab10-RA 167..214 527..480 190 95.8 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 00:37:12
Subject Length Description Subject Range Query Range Score Percent Strand
Rab30-RD 1305 CG9100-RD 435..1103 687..19 3345 100 Minus
Rab30-RC 2055 CG9100-RC 443..1111 687..19 3345 100 Minus
Rab30-RB 1970 CG9100-RB 358..1026 687..19 3345 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 00:37:05
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 7031437..7032105 19..687 3345 100 Plus
X 23542271 X 20252273..20252324 531..480 215 94.2 Minus
Blast to na_te.dros performed on 2015-02-12 00:37:09 has no hits.

BO12007.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:23:13 Download gff for BO12007.3prime
Subject Subject Range Query Range Percent Splice Strand
Rab30-PB 1..672 16..687 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 04:53:38 Download gff for BO12007.3prime
Subject Subject Range Query Range Percent Splice Strand
CG9100-PC 1..672 16..687 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 16:06:02 Download gff for BO12007.3prime
Subject Subject Range Query Range Percent Splice Strand
Rab30-RB 350..1031 13..695 98   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 02:13:34 Download gff for BO12007.3prime
Subject Subject Range Query Range Percent Splice Strand
Rab30-RB 350..1031 13..695 98   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 02:13:34 Download gff for BO12007.3prime
Subject Subject Range Query Range Percent Splice Strand
2L 7031432..7032110 13..693 98 <- Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 16:06:02 Download gff for BO12007.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 7031432..7032110 13..693 98 <- Plus

BO12007.5prime Sequence

701 bp (700 high quality bases) assembled on 2006-04-18

> BO12007.5prime
GAAGTTATCAGTCGACATGGAGGACTACAAGTTCCTGTTCAAAATCGTCC
TGGTGGGCAATGCTGGTGTTGGAAAAACATGCCTAGTGCGCCGCTTTACT
CAGGGTCTATTTCCACCTGGCCAGGGTGCCACCATTGGTGTGGATTTCAT
GATTAAGACCGTGGAGGTGGAGGGCGAGAAGATCAAGCTACAAATCTGGG
ACACCGCCGGCCAGGAGCGGTTCCGATCCATCACGCAAAGCTACTATCGA
TCGGCTCACGCCTTGATCCTGGTGTACGACATCAGCTGCCAGCCCACATT
TGACTGCCTGCCGGACTGGCTGCGCGAGATCCAGGAGTATGCCAACTCCA
AGGTACTCAAAATCCTGGTGGGTAACAAGACGGACAGGGATGATCGAGAG
ATACCCACCCAGATTGGCGAAGAGTTCGCCAAGCAGCATGACATGTACTT
CTTGGAGACATCCGCCAAGGAGGCAGAGAATGTAGAGCGTCTGTTCTACG
AGATTGCCGCCGAATTGATTGGTCAGGCAAGGAGCAAGGATGGCAGTAGT
TCGGCCGCAGCGGCAGCCGCCCAGCGTCAGTCGGAGGGCAGCTCCATCGG
ACTGGGGAGCTTCAGTGCCAAGGCAGCGCAGAGCAATTGCTGTGGCGGAC
TCGCCAGCGGCGGCTCCAACTCTAGTCAAGGCGGCGCAAGCTTTCTAGAC
C

BO12007.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:35:09
Subject Length Description Subject Range Query Range Score Percent Strand
CG9100-PA 672 Rab30-RA 1..669 17..685 3345 100 Plus
CG9100-PB 672 Rab30-RB 1..669 17..685 3345 100 Plus
CG9100-PC 672 Rab30-RC 1..669 17..685 3345 100 Plus
CG17060-PA 615 Rab10-RA 167..214 177..224 190 95.8 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 16:58:06
Subject Length Description Subject Range Query Range Score Percent Strand
Rab30-RD 1305 CG9100-RD 435..1103 17..685 3345 100 Plus
Rab30-RC 2055 CG9100-RC 443..1111 17..685 3345 100 Plus
Rab30-RB 1970 CG9100-RB 358..1026 17..685 3345 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 16:57:57
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 7031437..7032105 685..17 3345 100 Minus
X 23542271 X 20252273..20252324 173..224 215 94.2 Plus
Blast to na_te.dros performed on 2015-02-11 16:58:02 has no hits.

BO12007.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:23:14 Download gff for BO12007.5prime
Subject Subject Range Query Range Percent Splice Strand
Rab30-PB 1..672 17..688 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 04:53:40 Download gff for BO12007.5prime
Subject Subject Range Query Range Percent Splice Strand
CG9100-PC 1..672 17..688 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-26 16:48:11 Download gff for BO12007.5prime
Subject Subject Range Query Range Percent Splice Strand
Rab30-RB 350..1031 9..691 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 19:24:13 Download gff for BO12007.5prime
Subject Subject Range Query Range Percent Splice Strand
Rab30-RB 350..1031 9..691 98   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 19:24:13 Download gff for BO12007.5prime
Subject Subject Range Query Range Percent Splice Strand
2L 7031432..7032110 11..691 98 <- Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-26 16:48:11 Download gff for BO12007.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 7031432..7032110 11..691 98 <- Minus

BO12007.complete Sequence

703 bp assembled on 2006-10-11

GenBank Submission: FJ632279

> BO12007.complete
GAAGTTATCAGTCGACATGGAGGACTACAAGTTCCTGTTCAAAATCGTCC
TGGTGGGCAATGCTGGTGTTGGAAAAACATGCCTAGTGCGCCGCTTTACT
CAGGGTCTATTTCCACCTGGCCAGGGTGCCACCATTGGTGTGGATTTCAT
GATTAAGACCGTGGAGGTGGAGGGCGAGAAGATCAAGCTACAAATCTGGG
ACACCGCCGGCCAGGAGCGGTTCCGATCCATCACGCAAAGCTACTATCGA
TCGGCTCACGCCTTGATCCTGGTGTACGACATCAGCTGCCAGCCCACATT
TGACTGCCTGCCGGACTGGCTGCGCGAGATCCAGGAGTATGCCAACTCCA
AGGTACTCAAAATCCTGGTGGGTAACAAGACGGACAGGGATGATCGAGAG
ATACCCACCCAGATTGGCGAAGAGTTCGCCAAGCAGCATGACATGTACTT
CTTGGAGACATCCGCCAAGGAGGCAGAGAATGTAGAGCGTCTGTTCTACG
AGATTGCCGCCGAATTGATTGGTCAGGCAAGGAGCAAGGATGGCAGTAGT
TCGGCCGCAGCGGCAGCCGCCCAGCGTCAGTCGGAGGGCAGCTCCATCGG
ACTGGGGAGCTTCAGTGCCAAGGCAGCGCAGAGCAATTGCTGTGGCGGAC
TCGCCAGCGGCGGCTCCAACTCTAGTCAAGGCGGCGCAAGCTTTCTAGAC
CAT

BO12007.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 07:12:29
Subject Length Description Subject Range Query Range Score Percent Strand
Rab30-RD 672 CG9100-PD 1..669 17..685 3345 100 Plus
Rab30-RC 672 CG9100-PC 1..669 17..685 3345 100 Plus
Rab30-RB 672 CG9100-PB 1..669 17..685 3345 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 07:12:30
Subject Length Description Subject Range Query Range Score Percent Strand
Rab30-RD 1305 CG9100-RD 435..1103 17..685 3345 100 Plus
Rab30-RC 2055 CG9100-RC 443..1111 17..685 3345 100 Plus
Rab30-RB 1970 CG9100-RB 358..1026 17..685 3345 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 07:12:27
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 7031437..7032105 685..17 3345 100 Minus
X 23542271 X 20252273..20252324 173..224 215 94.2 Plus
Blast to na_te.dros performed on 2014-11-27 07:12:28 has no hits.

BO12007.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:03:39 Download gff for BO12007.complete
Subject Subject Range Query Range Percent Splice Strand
Rab30-RC 1..672 17..688 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:17:26 Download gff for BO12007.complete
Subject Subject Range Query Range Percent Splice Strand
Rab30-RC 424..1105 9..691 98   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 05:08:42 Download gff for BO12007.complete
Subject Subject Range Query Range Percent Splice Strand
Rab30-RB 358..1026 17..687 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:03:39 Download gff for BO12007.complete
Subject Subject Range Query Range Percent Splice Strand
Rab30-RC 424..1105 9..691 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 08:05:45 Download gff for BO12007.complete
Subject Subject Range Query Range Percent Splice Strand
Rab30-RB 358..1026 17..687 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 08:05:45 Download gff for BO12007.complete
Subject Subject Range Query Range Percent Splice Strand
2L 7031434..7032105 17..687 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 05:08:42 Download gff for BO12007.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 7031434..7032105 17..687 99   Minus

BO12007.pep Sequence

Translation from 16 to 703

> BO12007.pep
MEDYKFLFKIVLVGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVE
VEGEKIKLQIWDTAGQERFRSITQSYYRSAHALILVYDISCQPTFDCLPD
WLREIQEYANSKVLKILVGNKTDRDDREIPTQIGEEFAKQHDMYFLETSA
KEAENVERLFYEIAAELIGQARSKDGSSSAAAAAAQRQSEGSSIGLGSFS
AKAAQSNCCGGLASGGSNSSQGGASFLDH

BO12007.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 00:27:49
Subject Length Description Subject Range Query Range Score Percent Strand
Rab30-PD 223 CG9100-PD 1..223 1..223 1143 100 Plus
Rab30-PC 223 CG9100-PC 1..223 1..223 1143 100 Plus
Rab30-PB 223 CG9100-PB 1..223 1..223 1143 100 Plus
Rab30-PA 223 CG9100-PA 1..223 1..223 1143 100 Plus
Rab10-PA 204 CG17060-PA 6..203 4..209 449 43.5 Plus