Clone Sequence Records
BO12007.3prime Sequence
701 bp (700 high quality bases) assembled on 2006-04-18
> BO12007.3prime
ATGGTCTAGAAAGCTTGCGCCGCCTTGACTAGAGTTGGAGCCGCCGCTGG
CGAGTCCGCCACAGCAATTGCTCTGCGCTGCCTTGGCACTGAAGCTCCCC
AGTCCGATGGAGCTGCCCTCCGACTGACGCTGGGCGGCTGCCGCTGCGGC
CGAACTACTGCCATCCTTGCTCCTTGCCTGACCAATCAATTCGGCGGCAA
TCTCGTAGAACAGACGCTCTACATTCTCTGCCTCCTTGGCGGATGTCTCC
AAGAAGTACATGTCATGCTGCTTGGCGAACTCTTCGCCAATCTGGGTGGG
TATCTCTCGATCATCCCTGTCCGTCTTGTTACCCACCAGGATTTTGAGTA
CCTTGGAGTTGGCATACTCCTGGATCTCGCGCAGCCAGTCCGGCAGGCAG
TCAAATGTGGGCTGGCAGCTGATGTCGTACACCAGGATCAAGGCGTGAGC
CGATCGATAGTAGCTTTGCGTGATGGATCGGAACCGCTCCTGGCCGGCGG
TGTCCCAGATTTGTAGCTTGATCTTCTCGCCCTCCACCTCCACGGTCTTA
ATCATGAAATCCACACCAATGGTGGCACCCTGGCCAGGTGGAAATAGACC
CTGAGTAAAGCGGCGCACTAGGCATGTTTTTCCAACACCAGCATTGCCCA
CCAGGACGATTTTGAACAGGAACTTGTAGTCCTCCATGTCGACTGATAAC
T
BO12007.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:35:08
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9100-PA | 672 | Rab30-RA | 1..669 | 687..19 | 3345 | 100 | Minus |
CG9100-PB | 672 | Rab30-RB | 1..669 | 687..19 | 3345 | 100 | Minus |
CG9100-PC | 672 | Rab30-RC | 1..669 | 687..19 | 3345 | 100 | Minus |
CG17060-PA | 615 | Rab10-RA | 167..214 | 527..480 | 190 | 95.8 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 00:37:12
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Rab30-RD | 1305 | CG9100-RD | 435..1103 | 687..19 | 3345 | 100 | Minus |
Rab30-RC | 2055 | CG9100-RC | 443..1111 | 687..19 | 3345 | 100 | Minus |
Rab30-RB | 1970 | CG9100-RB | 358..1026 | 687..19 | 3345 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 00:37:05
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 7031437..7032105 | 19..687 | 3345 | 100 | Plus |
X | 23542271 | X | 20252273..20252324 | 531..480 | 215 | 94.2 | Minus |
Blast to na_te.dros performed on 2015-02-12 00:37:09 has no hits.
BO12007.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:23:13 Download gff for
BO12007.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Rab30-PB | 1..672 | 16..687 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 04:53:38 Download gff for
BO12007.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9100-PC | 1..672 | 16..687 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 16:06:02 Download gff for
BO12007.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Rab30-RB | 350..1031 | 13..695 | 98 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 02:13:34 Download gff for
BO12007.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Rab30-RB | 350..1031 | 13..695 | 98 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 02:13:34 Download gff for
BO12007.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 7031432..7032110 | 13..693 | 98 | <- | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 16:06:02 Download gff for
BO12007.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 7031432..7032110 | 13..693 | 98 | <- | Plus |
BO12007.5prime Sequence
701 bp (700 high quality bases) assembled on 2006-04-18
> BO12007.5prime
GAAGTTATCAGTCGACATGGAGGACTACAAGTTCCTGTTCAAAATCGTCC
TGGTGGGCAATGCTGGTGTTGGAAAAACATGCCTAGTGCGCCGCTTTACT
CAGGGTCTATTTCCACCTGGCCAGGGTGCCACCATTGGTGTGGATTTCAT
GATTAAGACCGTGGAGGTGGAGGGCGAGAAGATCAAGCTACAAATCTGGG
ACACCGCCGGCCAGGAGCGGTTCCGATCCATCACGCAAAGCTACTATCGA
TCGGCTCACGCCTTGATCCTGGTGTACGACATCAGCTGCCAGCCCACATT
TGACTGCCTGCCGGACTGGCTGCGCGAGATCCAGGAGTATGCCAACTCCA
AGGTACTCAAAATCCTGGTGGGTAACAAGACGGACAGGGATGATCGAGAG
ATACCCACCCAGATTGGCGAAGAGTTCGCCAAGCAGCATGACATGTACTT
CTTGGAGACATCCGCCAAGGAGGCAGAGAATGTAGAGCGTCTGTTCTACG
AGATTGCCGCCGAATTGATTGGTCAGGCAAGGAGCAAGGATGGCAGTAGT
TCGGCCGCAGCGGCAGCCGCCCAGCGTCAGTCGGAGGGCAGCTCCATCGG
ACTGGGGAGCTTCAGTGCCAAGGCAGCGCAGAGCAATTGCTGTGGCGGAC
TCGCCAGCGGCGGCTCCAACTCTAGTCAAGGCGGCGCAAGCTTTCTAGAC
C
BO12007.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:35:09
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9100-PA | 672 | Rab30-RA | 1..669 | 17..685 | 3345 | 100 | Plus |
CG9100-PB | 672 | Rab30-RB | 1..669 | 17..685 | 3345 | 100 | Plus |
CG9100-PC | 672 | Rab30-RC | 1..669 | 17..685 | 3345 | 100 | Plus |
CG17060-PA | 615 | Rab10-RA | 167..214 | 177..224 | 190 | 95.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 16:58:06
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Rab30-RD | 1305 | CG9100-RD | 435..1103 | 17..685 | 3345 | 100 | Plus |
Rab30-RC | 2055 | CG9100-RC | 443..1111 | 17..685 | 3345 | 100 | Plus |
Rab30-RB | 1970 | CG9100-RB | 358..1026 | 17..685 | 3345 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 16:57:57
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 7031437..7032105 | 685..17 | 3345 | 100 | Minus |
X | 23542271 | X | 20252273..20252324 | 173..224 | 215 | 94.2 | Plus |
Blast to na_te.dros performed on 2015-02-11 16:58:02 has no hits.
BO12007.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:23:14 Download gff for
BO12007.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Rab30-PB | 1..672 | 17..688 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 04:53:40 Download gff for
BO12007.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9100-PC | 1..672 | 17..688 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-26 16:48:11 Download gff for
BO12007.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Rab30-RB | 350..1031 | 9..691 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 19:24:13 Download gff for
BO12007.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Rab30-RB | 350..1031 | 9..691 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 19:24:13 Download gff for
BO12007.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 7031432..7032110 | 11..691 | 98 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-26 16:48:11 Download gff for
BO12007.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 7031432..7032110 | 11..691 | 98 | <- | Minus |
BO12007.complete Sequence
703 bp assembled on 2006-10-11
GenBank Submission: FJ632279
> BO12007.complete
GAAGTTATCAGTCGACATGGAGGACTACAAGTTCCTGTTCAAAATCGTCC
TGGTGGGCAATGCTGGTGTTGGAAAAACATGCCTAGTGCGCCGCTTTACT
CAGGGTCTATTTCCACCTGGCCAGGGTGCCACCATTGGTGTGGATTTCAT
GATTAAGACCGTGGAGGTGGAGGGCGAGAAGATCAAGCTACAAATCTGGG
ACACCGCCGGCCAGGAGCGGTTCCGATCCATCACGCAAAGCTACTATCGA
TCGGCTCACGCCTTGATCCTGGTGTACGACATCAGCTGCCAGCCCACATT
TGACTGCCTGCCGGACTGGCTGCGCGAGATCCAGGAGTATGCCAACTCCA
AGGTACTCAAAATCCTGGTGGGTAACAAGACGGACAGGGATGATCGAGAG
ATACCCACCCAGATTGGCGAAGAGTTCGCCAAGCAGCATGACATGTACTT
CTTGGAGACATCCGCCAAGGAGGCAGAGAATGTAGAGCGTCTGTTCTACG
AGATTGCCGCCGAATTGATTGGTCAGGCAAGGAGCAAGGATGGCAGTAGT
TCGGCCGCAGCGGCAGCCGCCCAGCGTCAGTCGGAGGGCAGCTCCATCGG
ACTGGGGAGCTTCAGTGCCAAGGCAGCGCAGAGCAATTGCTGTGGCGGAC
TCGCCAGCGGCGGCTCCAACTCTAGTCAAGGCGGCGCAAGCTTTCTAGAC
CAT
BO12007.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 07:12:29
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Rab30-RD | 672 | CG9100-PD | 1..669 | 17..685 | 3345 | 100 | Plus |
Rab30-RC | 672 | CG9100-PC | 1..669 | 17..685 | 3345 | 100 | Plus |
Rab30-RB | 672 | CG9100-PB | 1..669 | 17..685 | 3345 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 07:12:30
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Rab30-RD | 1305 | CG9100-RD | 435..1103 | 17..685 | 3345 | 100 | Plus |
Rab30-RC | 2055 | CG9100-RC | 443..1111 | 17..685 | 3345 | 100 | Plus |
Rab30-RB | 1970 | CG9100-RB | 358..1026 | 17..685 | 3345 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 07:12:27
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 7031437..7032105 | 685..17 | 3345 | 100 | Minus |
X | 23542271 | X | 20252273..20252324 | 173..224 | 215 | 94.2 | Plus |
Blast to na_te.dros performed on 2014-11-27 07:12:28 has no hits.
BO12007.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:03:39 Download gff for
BO12007.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Rab30-RC | 1..672 | 17..688 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:17:26 Download gff for
BO12007.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Rab30-RC | 424..1105 | 9..691 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 05:08:42 Download gff for
BO12007.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Rab30-RB | 358..1026 | 17..687 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:03:39 Download gff for
BO12007.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Rab30-RC | 424..1105 | 9..691 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 08:05:45 Download gff for
BO12007.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Rab30-RB | 358..1026 | 17..687 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 08:05:45 Download gff for
BO12007.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 7031434..7032105 | 17..687 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 05:08:42 Download gff for
BO12007.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 7031434..7032105 | 17..687 | 99 | | Minus |
BO12007.pep Sequence
Translation from 16 to 703
> BO12007.pep
MEDYKFLFKIVLVGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVE
VEGEKIKLQIWDTAGQERFRSITQSYYRSAHALILVYDISCQPTFDCLPD
WLREIQEYANSKVLKILVGNKTDRDDREIPTQIGEEFAKQHDMYFLETSA
KEAENVERLFYEIAAELIGQARSKDGSSSAAAAAAQRQSEGSSIGLGSFS
AKAAQSNCCGGLASGGSNSSQGGASFLDH
BO12007.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 00:27:49
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Rab30-PD | 223 | CG9100-PD | 1..223 | 1..223 | 1143 | 100 | Plus |
Rab30-PC | 223 | CG9100-PC | 1..223 | 1..223 | 1143 | 100 | Plus |
Rab30-PB | 223 | CG9100-PB | 1..223 | 1..223 | 1143 | 100 | Plus |
Rab30-PA | 223 | CG9100-PA | 1..223 | 1..223 | 1143 | 100 | Plus |
Rab10-PA | 204 | CG17060-PA | 6..203 | 4..209 | 449 | 43.5 | Plus |