Clone Sequence Records
BO12011.3prime Sequence
875 bp (837 high quality bases) assembled on 2006-04-20
> BO12011.3prime
ATGGTCTAGAAAGCTTGCGCAATTGTGGCACTTGACCAGGCCCACCTCGT
CGCAGTTCATGCACTTGAGGGCCACGAACTCGGCAGTGAAGTGGTTGCGG
TGCACGGACTTCTTGGACCCGTTGCAGGAGGGGCAGGGCAGCAGGCGGTA
GCCGCCGCAGGTCTGGCAGGTGTAGGTGCTGGCCATGGACTTGTACGGTT
TGAGCAGCTGCCTCAGCTCGCCGGACTCGTTCATCCGCTCCACGGTCTCG
GCGTCCCCGATGTGCTGGCCCTCGACGTACAGCTGTGGCACCCGCACCTG
ACCGCTCTGCATCCGCTGGCGCATCTCCGCCTGGTACTCCACGCTCATGA
AGACGTCCCGCTCCTCAAACTTGACCAGCAGGGTGCGCAGGATCTGCTTG
ACGTTGGCACACTTCGTGTAGGTTTCCCGGATGATGCCCATGCTGGTGGT
GTACAGCACCACCTTGCCCAGGTCTTTCTCCTTGAAGTTCTTGGCATTGG
GCTGCTGCTGGAGCTGCAAGAACGTGGCTATTCCATTGCGCACACGGTTC
TTGACGCCCCGCACCGTTCCCTTGGCCGATCGGATAGTGGACTGGGTGGA
ACTGGCCCCACATCGCACGTCCCGATAGCCGGCGAAGAGGTCTTGCTGCT
CCGTTAGGATCCCGCTGTCGGAGCCAGCCTCCGATCCCGCTCCCGTGGAG
TGGTCCGCCTCGTCGCCACTTCTCGCGCTTCTCGCACCGAAGTTCTCGTG
CTCGTTGATGTGAAAGCTGTAGTATTGGTCGTCAGCATACTTGTAATTGA
TATTGCCGCGGTGTCCGCCGATGTTGCTGCTGGCTGGAAGAGACTGCGAT
GTGGCATCGATGCTGCCCAGCGTCT
BO12011.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:35:13
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG31559-PA | 1365 | CG31559-RA | 506..1362 | 875..19 | 4260 | 99.8 | Minus |
CG12206-PA | 1749 | CG12206-RA | 1192..1253 | 576..515 | 185 | 91.9 | Minus |
CG12206-PB | 1749 | CG12206-RB | 1192..1253 | 576..515 | 185 | 91.9 | Minus |
CG12206-PC | 1749 | CG12206-RC | 1192..1253 | 576..515 | 185 | 91.9 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-03 08:07:43
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG31559-RA | 2003 | CG31559-RA | 685..1541 | 875..19 | 4270 | 99.9 | Minus |
CG12206-RC | 2348 | CG12206-RC | 1490..2048 | 580..19 | 1000 | 78.9 | Minus |
CG12206-RB | 2653 | CG12206-RB | 1795..2353 | 580..19 | 1000 | 78.9 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-03 08:07:33
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 6150578..6151050 | 19..491 | 2365 | 100 | Plus |
3R | 32079331 | 3R | 6156166..6156551 | 490..875 | 1915 | 99.7 | Plus |
X | 23542271 | X | 3466398..3466634 | 255..491 | 435 | 78.9 | Plus |
X | 23542271 | X | 3466037..3466186 | 19..168 | 300 | 80 | Plus |
X | 23542271 | X | 3471885..3471961 | 504..580 | 250 | 88.3 | Plus |
Blast to na_te.dros performed on 2015-02-03 08:07:38 has no hits.
BO12011.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:23:20 Download gff for
BO12011.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31559-PA | 506..1365 | 16..875 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 04:53:48 Download gff for
BO12011.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31559-PA | 506..1365 | 16..875 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-09 04:37:01 Download gff for
BO12011.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31559-RA | 685..1541 | 19..875 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-03 09:51:46 Download gff for
BO12011.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31559-RA | 685..1541 | 19..875 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-03 09:51:46 Download gff for
BO12011.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 6150578..6151048 | 19..489 | 100 | <- | Plus |
3R | 6156166..6156551 | 490..875 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-09 04:37:01 Download gff for
BO12011.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 1976300..1976770 | 19..489 | 100 | <- | Plus |
arm_3R | 1981888..1982273 | 490..875 | 99 | | Plus |
BO12011.5prime Sequence
818 bp (760 high quality bases) assembled on 2006-04-18
> BO12011.5prime
GAAGTTATCAGTCGACATGGTGCTGGCCACGCCCCCTGTGAGCAAGGGCG
GTAACGCGGGCGGCCTCTTCATGGACCAGTATCAGCAGTACGCGGCCCAC
TGTGAAACCGCCGACAGTGGCAATGGCAGTGACCTGGAGAGCACCGGATT
GCCCACCAAACCGGATGACAGCGAGGAGAGTGGCCCCTCCTCGCTGGGCA
GCGACTCCATGCACGGGAGCAGCACGGAGTACGTGCGACAGTCCGCCTCC
CAGCCCAGTGGCCAGCGGCAGCGACAGAAGTCCTTGCGGGTCCTGGGTGC
CCTGCTCCCCGACAGCCTGCTCCGCGACATACGGGACCGGAGGAGCACCG
AGTATGTGGTACAGTTCTCGCAGCCAGAGGATGAGGAGAAGATCCAGGTC
CCCGACAAGATTCCGGAGAAACCCAGTCCGTTCCGCCTGGCCCGCGAATC
GCTGAGCGAGGACAAAATAGAGGAGCTGCGGGCCGCAGTGGAGCGGGCCA
ACTTCGTTCAAACCGGTGAGGAGACGCTGGACAGCATCGATGCCACATCG
CAGTCTCTTCCAGCCAGCAGCAACATCGGCGGACACCGCGGCAATATCAA
TTACAAGTATGCTGACGACCAATACTACAGCTTTCACATCAACGAGCACG
AGAACTTCGGTGCGAGAAGCGCGAGAAGTGAGGACGAGGCGGACCACTCC
ACGGGAGCGGGATCGGAGGCTGGCTCCGACAGCGGGGATCCTAACGGAGC
AGCAAGACCTCTTCGCCGGCTATCGGGACGTGCGATGTGGGGCCAGTTCC
ACCCAGTCCACTATCCGA
BO12011.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:35:14
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG31559-PA | 1365 | CG31559-RA | 1..720 | 17..736 | 3550 | 99.7 | Plus |
CG31559-PA | 1365 | CG31559-RA | 718..801 | 735..818 | 420 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 05:21:34
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG31559-RA | 2003 | CG31559-RA | 180..980 | 17..818 | 3955 | 99.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 05:21:26
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 6156256..6157056 | 818..17 | 3930 | 99.6 | Minus |
Blast to na_te.dros performed on 2015-02-12 05:21:30 has no hits.
BO12011.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:23:21 Download gff for
BO12011.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31559-PA | 1..800 | 17..817 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 04:53:49 Download gff for
BO12011.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31559-PA | 1..800 | 17..817 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 13:53:05 Download gff for
BO12011.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31559-RA | 169..979 | 3..817 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 07:58:00 Download gff for
BO12011.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31559-RA | 169..979 | 3..817 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 07:58:00 Download gff for
BO12011.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 6156257..6157067 | 3..817 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 13:53:05 Download gff for
BO12011.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 1981979..1982789 | 3..817 | 99 | | Minus |
BO12011.complete Sequence
1396 bp assembled on 2006-10-11
GenBank Submission: FJ632280
> BO12011.complete
GAAGTTATCAGTCGACATGGTGCTGGCCACGCCCCCTGTGAGCAAGGGCG
GTAACGCGGGCGGCCTCTTCATGGACCAGTATCAGCAGTACGCGGCCCAC
TGTGAAACCGCCGACAGTGGCAATGGCAGTGACCTGGAGAGCACCGGATT
GCCCACCAAACCGGATGACAGCGAGGAGAGTGGCCCCTCCTCGCTGGGCA
GCGACTCCATGCACGGGAGCAGCACGGAGTACGTGCGACAGTCCGCCTCC
CAGCCCAGTGGCCAGCGGCAGCGACAGAAGTCCTTGCGGGTCCTGGGTGC
CCTGCTCCCCGACAGCCTGCTCCGCGACATACGGGACCGGAGGAGCACCG
AGTATGTGGTACAGTTCTCGCAGCCAGAGGATGAGGAGAAGATCCAGGTC
CCCGACAAGATTCCGGAGAAACCCAGTCCGTTCCGCCTGGCCCGCGAATC
GCTGAGCGAGGACAAAATAGAGGAGCTGCGGGCCGCAGTGGAGCGGGCCA
ACTTCGTTCAAACCGGTGAGGAGACGCTGGACAGCATCGATGCCACATCG
CAGTCTCTTCCAGCCAGCAGCAACATCGGCGGACACCGCGGCAATATCAA
TTACAAGTATGCTGACGACCAATACTACAGCTTTCACATCAACGAGCACG
AGAACTTCGGTGCGAGAAGCGCGAGAAGTGGCGACGAGGCGGACCACTCC
ACGGGAGCGGGATCGGAGGCTGGCTCCGACAGCGGGATCCTAACGGAGCA
GCAAGACCTCTTCGCCGGCTATCGGGACGTGCGATGTGGGGCCAGTTCCA
CCCAGTCCACTATCCGATCGGCCAAGGGAACGGTGCGGGGCGTCAAGAAC
CGTGTGCGCAATGGAATAGCCACGTTCTTGCAGCTCCAGCAGCAGCCCAA
TGCCAAGAACTTCAAGGAGAAAGACCTGGGCAAGGTGGTGCTGTACACCA
CCAGCATGGGCATCATCCGGGAAACCTACACGAAGTGTGCCAACGTCAAG
CAGATCCTGCGCACCCTGCTGGTCAAGTTTGAGGAGCGGGACGTCTTCAT
GAGCGTGGAGTACCAGGCGGAGATGCGCCAGCGGATGCAGAGCGGTCAGG
TGCGGGTGCCACAGCTGTACGTCGAGGGCCAGCACATCGGGGACGCCGAG
ACCGTGGAGCGGATGAACGAGTCCGGCGAGCTGAGGCAGCTGCTCAAACC
GTACAAGTCCATGGCCAGCACCTACACCTGCCAGACCTGCGGCGGCTACC
GCCTGCTGCCCTGCCCCTCCTGCAACGGGTCCAAGAAGTCCGTGCACCGC
AACCACTTCACTGCCGAGTTCGTGGCCCTCAAGTGCATGAACTGCGACGA
GGTGGGCCTGGTCAAGTGCCACAATTGCGCAAGCTTTCTAGACCAT
BO12011.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 13:31:57
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG31559-RA | 1365 | CG31559-PA | 1..1362 | 17..1378 | 6810 | 100 | Plus |
CG12206-RC | 1749 | CG12206-PC | 1188..1746 | 817..1378 | 975 | 78.6 | Plus |
CG12206-RB | 1749 | CG12206-PB | 1188..1746 | 817..1378 | 975 | 78.6 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 13:31:58
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG31559-RA | 2003 | CG31559-RA | 180..1541 | 17..1378 | 6810 | 100 | Plus |
CG12206-RC | 2348 | CG12206-RC | 1490..2048 | 817..1378 | 975 | 78.6 | Plus |
CG12206-RB | 2653 | CG12206-RB | 1795..2353 | 817..1378 | 975 | 78.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 13:31:56
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 6156166..6157056 | 907..17 | 4455 | 100 | Minus |
3R | 32079331 | 3R | 6150578..6151050 | 1378..906 | 2365 | 100 | Minus |
X | 23542271 | X | 3466398..3466634 | 1142..906 | 435 | 78.9 | Minus |
X | 23542271 | X | 3466037..3466186 | 1378..1229 | 300 | 80 | Minus |
X | 23542271 | X | 3471885..3471961 | 893..817 | 250 | 88.3 | Minus |
Blast to na_te.dros performed on 2014-11-27 13:31:57 has no hits.
BO12011.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:04:20 Download gff for
BO12011.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31559-RA | 1..1365 | 17..1381 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:18:38 Download gff for
BO12011.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31559-RA | 161..1533 | 3..1378 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:51:35 Download gff for
BO12011.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31559-RA | 180..1541 | 17..1380 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:04:20 Download gff for
BO12011.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31559-RA | 161..1533 | 3..1378 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:20:37 Download gff for
BO12011.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31559-RA | 180..1541 | 17..1380 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 14:20:37 Download gff for
BO12011.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 6150575..6151048 | 908..1380 | 99 | <- | Minus |
3R | 6156166..6157056 | 17..907 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:51:35 Download gff for
BO12011.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 1976297..1976770 | 908..1380 | 99 | <- | Minus |
arm_3R | 1981888..1982778 | 17..907 | 100 | | Minus |
BO12011.pep Sequence
Translation from 16 to 1396
> BO12011.pep
MVLATPPVSKGGNAGGLFMDQYQQYAAHCETADSGNGSDLESTGLPTKPD
DSEESGPSSLGSDSMHGSSTEYVRQSASQPSGQRQRQKSLRVLGALLPDS
LLRDIRDRRSTEYVVQFSQPEDEEKIQVPDKIPEKPSPFRLARESLSEDK
IEELRAAVERANFVQTGEETLDSIDATSQSLPASSNIGGHRGNINYKYAD
DQYYSFHINEHENFGARSARSGDEADHSTGAGSEAGSDSGILTEQQDLFA
GYRDVRCGASSTQSTIRSAKGTVRGVKNRVRNGIATFLQLQQQPNAKNFK
EKDLGKVVLYTTSMGIIRETYTKCANVKQILRTLLVKFEERDVFMSVEYQ
AEMRQRMQSGQVRVPQLYVEGQHIGDAETVERMNESGELRQLLKPYKSMA
STYTCQTCGGYRLLPCPSCNGSKKSVHRNHFTAEFVALKCMNCDEVGLVK
CHNCASFLDH
BO12011.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 00:23:43
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG31559-PA | 454 | CG31559-PA | 1..454 | 1..454 | 2353 | 100 | Plus |
CG12206-PC | 582 | CG12206-PC | 208..582 | 19..454 | 950 | 48.3 | Plus |
CG12206-PB | 582 | CG12206-PB | 208..582 | 19..454 | 950 | 48.3 | Plus |
CG12206-PA | 582 | CG12206-PA | 208..582 | 19..454 | 950 | 48.3 | Plus |