Clone BO12011 Report

Search the DGRC for BO12011

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:120
Well:11
Vector:pDNR-Dual
Associated Gene/TranscriptCG31559-RA
Protein status:BO12011.pep: validated full length
Sequenced Size:1396

Clone Sequence Records

BO12011.3prime Sequence

875 bp (837 high quality bases) assembled on 2006-04-20

> BO12011.3prime
ATGGTCTAGAAAGCTTGCGCAATTGTGGCACTTGACCAGGCCCACCTCGT
CGCAGTTCATGCACTTGAGGGCCACGAACTCGGCAGTGAAGTGGTTGCGG
TGCACGGACTTCTTGGACCCGTTGCAGGAGGGGCAGGGCAGCAGGCGGTA
GCCGCCGCAGGTCTGGCAGGTGTAGGTGCTGGCCATGGACTTGTACGGTT
TGAGCAGCTGCCTCAGCTCGCCGGACTCGTTCATCCGCTCCACGGTCTCG
GCGTCCCCGATGTGCTGGCCCTCGACGTACAGCTGTGGCACCCGCACCTG
ACCGCTCTGCATCCGCTGGCGCATCTCCGCCTGGTACTCCACGCTCATGA
AGACGTCCCGCTCCTCAAACTTGACCAGCAGGGTGCGCAGGATCTGCTTG
ACGTTGGCACACTTCGTGTAGGTTTCCCGGATGATGCCCATGCTGGTGGT
GTACAGCACCACCTTGCCCAGGTCTTTCTCCTTGAAGTTCTTGGCATTGG
GCTGCTGCTGGAGCTGCAAGAACGTGGCTATTCCATTGCGCACACGGTTC
TTGACGCCCCGCACCGTTCCCTTGGCCGATCGGATAGTGGACTGGGTGGA
ACTGGCCCCACATCGCACGTCCCGATAGCCGGCGAAGAGGTCTTGCTGCT
CCGTTAGGATCCCGCTGTCGGAGCCAGCCTCCGATCCCGCTCCCGTGGAG
TGGTCCGCCTCGTCGCCACTTCTCGCGCTTCTCGCACCGAAGTTCTCGTG
CTCGTTGATGTGAAAGCTGTAGTATTGGTCGTCAGCATACTTGTAATTGA
TATTGCCGCGGTGTCCGCCGATGTTGCTGCTGGCTGGAAGAGACTGCGAT
GTGGCATCGATGCTGCCCAGCGTCT

BO12011.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:35:13
Subject Length Description Subject Range Query Range Score Percent Strand
CG31559-PA 1365 CG31559-RA 506..1362 875..19 4260 99.8 Minus
CG12206-PA 1749 CG12206-RA 1192..1253 576..515 185 91.9 Minus
CG12206-PB 1749 CG12206-RB 1192..1253 576..515 185 91.9 Minus
CG12206-PC 1749 CG12206-RC 1192..1253 576..515 185 91.9 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-03 08:07:43
Subject Length Description Subject Range Query Range Score Percent Strand
CG31559-RA 2003 CG31559-RA 685..1541 875..19 4270 99.9 Minus
CG12206-RC 2348 CG12206-RC 1490..2048 580..19 1000 78.9 Minus
CG12206-RB 2653 CG12206-RB 1795..2353 580..19 1000 78.9 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-03 08:07:33
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 6150578..6151050 19..491 2365 100 Plus
3R 32079331 3R 6156166..6156551 490..875 1915 99.7 Plus
X 23542271 X 3466398..3466634 255..491 435 78.9 Plus
X 23542271 X 3466037..3466186 19..168 300 80 Plus
X 23542271 X 3471885..3471961 504..580 250 88.3 Plus
Blast to na_te.dros performed on 2015-02-03 08:07:38 has no hits.

BO12011.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:23:20 Download gff for BO12011.3prime
Subject Subject Range Query Range Percent Splice Strand
CG31559-PA 506..1365 16..875 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 04:53:48 Download gff for BO12011.3prime
Subject Subject Range Query Range Percent Splice Strand
CG31559-PA 506..1365 16..875 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-09 04:37:01 Download gff for BO12011.3prime
Subject Subject Range Query Range Percent Splice Strand
CG31559-RA 685..1541 19..875 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-03 09:51:46 Download gff for BO12011.3prime
Subject Subject Range Query Range Percent Splice Strand
CG31559-RA 685..1541 19..875 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-03 09:51:46 Download gff for BO12011.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 6150578..6151048 19..489 100 <- Plus
3R 6156166..6156551 490..875 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-09 04:37:01 Download gff for BO12011.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 1976300..1976770 19..489 100 <- Plus
arm_3R 1981888..1982273 490..875 99   Plus

BO12011.5prime Sequence

818 bp (760 high quality bases) assembled on 2006-04-18

> BO12011.5prime
GAAGTTATCAGTCGACATGGTGCTGGCCACGCCCCCTGTGAGCAAGGGCG
GTAACGCGGGCGGCCTCTTCATGGACCAGTATCAGCAGTACGCGGCCCAC
TGTGAAACCGCCGACAGTGGCAATGGCAGTGACCTGGAGAGCACCGGATT
GCCCACCAAACCGGATGACAGCGAGGAGAGTGGCCCCTCCTCGCTGGGCA
GCGACTCCATGCACGGGAGCAGCACGGAGTACGTGCGACAGTCCGCCTCC
CAGCCCAGTGGCCAGCGGCAGCGACAGAAGTCCTTGCGGGTCCTGGGTGC
CCTGCTCCCCGACAGCCTGCTCCGCGACATACGGGACCGGAGGAGCACCG
AGTATGTGGTACAGTTCTCGCAGCCAGAGGATGAGGAGAAGATCCAGGTC
CCCGACAAGATTCCGGAGAAACCCAGTCCGTTCCGCCTGGCCCGCGAATC
GCTGAGCGAGGACAAAATAGAGGAGCTGCGGGCCGCAGTGGAGCGGGCCA
ACTTCGTTCAAACCGGTGAGGAGACGCTGGACAGCATCGATGCCACATCG
CAGTCTCTTCCAGCCAGCAGCAACATCGGCGGACACCGCGGCAATATCAA
TTACAAGTATGCTGACGACCAATACTACAGCTTTCACATCAACGAGCACG
AGAACTTCGGTGCGAGAAGCGCGAGAAGTGAGGACGAGGCGGACCACTCC
ACGGGAGCGGGATCGGAGGCTGGCTCCGACAGCGGGGATCCTAACGGAGC
AGCAAGACCTCTTCGCCGGCTATCGGGACGTGCGATGTGGGGCCAGTTCC
ACCCAGTCCACTATCCGA

BO12011.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:35:14
Subject Length Description Subject Range Query Range Score Percent Strand
CG31559-PA 1365 CG31559-RA 1..720 17..736 3550 99.7 Plus
CG31559-PA 1365 CG31559-RA 718..801 735..818 420 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 05:21:34
Subject Length Description Subject Range Query Range Score Percent Strand
CG31559-RA 2003 CG31559-RA 180..980 17..818 3955 99.6 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 05:21:26
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 6156256..6157056 818..17 3930 99.6 Minus
Blast to na_te.dros performed on 2015-02-12 05:21:30 has no hits.

BO12011.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:23:21 Download gff for BO12011.5prime
Subject Subject Range Query Range Percent Splice Strand
CG31559-PA 1..800 17..817 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 04:53:49 Download gff for BO12011.5prime
Subject Subject Range Query Range Percent Splice Strand
CG31559-PA 1..800 17..817 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 13:53:05 Download gff for BO12011.5prime
Subject Subject Range Query Range Percent Splice Strand
CG31559-RA 169..979 3..817 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 07:58:00 Download gff for BO12011.5prime
Subject Subject Range Query Range Percent Splice Strand
CG31559-RA 169..979 3..817 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 07:58:00 Download gff for BO12011.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 6156257..6157067 3..817 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 13:53:05 Download gff for BO12011.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 1981979..1982789 3..817 99   Minus

BO12011.complete Sequence

1396 bp assembled on 2006-10-11

GenBank Submission: FJ632280

> BO12011.complete
GAAGTTATCAGTCGACATGGTGCTGGCCACGCCCCCTGTGAGCAAGGGCG
GTAACGCGGGCGGCCTCTTCATGGACCAGTATCAGCAGTACGCGGCCCAC
TGTGAAACCGCCGACAGTGGCAATGGCAGTGACCTGGAGAGCACCGGATT
GCCCACCAAACCGGATGACAGCGAGGAGAGTGGCCCCTCCTCGCTGGGCA
GCGACTCCATGCACGGGAGCAGCACGGAGTACGTGCGACAGTCCGCCTCC
CAGCCCAGTGGCCAGCGGCAGCGACAGAAGTCCTTGCGGGTCCTGGGTGC
CCTGCTCCCCGACAGCCTGCTCCGCGACATACGGGACCGGAGGAGCACCG
AGTATGTGGTACAGTTCTCGCAGCCAGAGGATGAGGAGAAGATCCAGGTC
CCCGACAAGATTCCGGAGAAACCCAGTCCGTTCCGCCTGGCCCGCGAATC
GCTGAGCGAGGACAAAATAGAGGAGCTGCGGGCCGCAGTGGAGCGGGCCA
ACTTCGTTCAAACCGGTGAGGAGACGCTGGACAGCATCGATGCCACATCG
CAGTCTCTTCCAGCCAGCAGCAACATCGGCGGACACCGCGGCAATATCAA
TTACAAGTATGCTGACGACCAATACTACAGCTTTCACATCAACGAGCACG
AGAACTTCGGTGCGAGAAGCGCGAGAAGTGGCGACGAGGCGGACCACTCC
ACGGGAGCGGGATCGGAGGCTGGCTCCGACAGCGGGATCCTAACGGAGCA
GCAAGACCTCTTCGCCGGCTATCGGGACGTGCGATGTGGGGCCAGTTCCA
CCCAGTCCACTATCCGATCGGCCAAGGGAACGGTGCGGGGCGTCAAGAAC
CGTGTGCGCAATGGAATAGCCACGTTCTTGCAGCTCCAGCAGCAGCCCAA
TGCCAAGAACTTCAAGGAGAAAGACCTGGGCAAGGTGGTGCTGTACACCA
CCAGCATGGGCATCATCCGGGAAACCTACACGAAGTGTGCCAACGTCAAG
CAGATCCTGCGCACCCTGCTGGTCAAGTTTGAGGAGCGGGACGTCTTCAT
GAGCGTGGAGTACCAGGCGGAGATGCGCCAGCGGATGCAGAGCGGTCAGG
TGCGGGTGCCACAGCTGTACGTCGAGGGCCAGCACATCGGGGACGCCGAG
ACCGTGGAGCGGATGAACGAGTCCGGCGAGCTGAGGCAGCTGCTCAAACC
GTACAAGTCCATGGCCAGCACCTACACCTGCCAGACCTGCGGCGGCTACC
GCCTGCTGCCCTGCCCCTCCTGCAACGGGTCCAAGAAGTCCGTGCACCGC
AACCACTTCACTGCCGAGTTCGTGGCCCTCAAGTGCATGAACTGCGACGA
GGTGGGCCTGGTCAAGTGCCACAATTGCGCAAGCTTTCTAGACCAT

BO12011.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 13:31:57
Subject Length Description Subject Range Query Range Score Percent Strand
CG31559-RA 1365 CG31559-PA 1..1362 17..1378 6810 100 Plus
CG12206-RC 1749 CG12206-PC 1188..1746 817..1378 975 78.6 Plus
CG12206-RB 1749 CG12206-PB 1188..1746 817..1378 975 78.6 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 13:31:58
Subject Length Description Subject Range Query Range Score Percent Strand
CG31559-RA 2003 CG31559-RA 180..1541 17..1378 6810 100 Plus
CG12206-RC 2348 CG12206-RC 1490..2048 817..1378 975 78.6 Plus
CG12206-RB 2653 CG12206-RB 1795..2353 817..1378 975 78.6 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 13:31:56
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 6156166..6157056 907..17 4455 100 Minus
3R 32079331 3R 6150578..6151050 1378..906 2365 100 Minus
X 23542271 X 3466398..3466634 1142..906 435 78.9 Minus
X 23542271 X 3466037..3466186 1378..1229 300 80 Minus
X 23542271 X 3471885..3471961 893..817 250 88.3 Minus
Blast to na_te.dros performed on 2014-11-27 13:31:57 has no hits.

BO12011.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:04:20 Download gff for BO12011.complete
Subject Subject Range Query Range Percent Splice Strand
CG31559-RA 1..1365 17..1381 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:18:38 Download gff for BO12011.complete
Subject Subject Range Query Range Percent Splice Strand
CG31559-RA 161..1533 3..1378 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:51:35 Download gff for BO12011.complete
Subject Subject Range Query Range Percent Splice Strand
CG31559-RA 180..1541 17..1380 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:04:20 Download gff for BO12011.complete
Subject Subject Range Query Range Percent Splice Strand
CG31559-RA 161..1533 3..1378 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:20:37 Download gff for BO12011.complete
Subject Subject Range Query Range Percent Splice Strand
CG31559-RA 180..1541 17..1380 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 14:20:37 Download gff for BO12011.complete
Subject Subject Range Query Range Percent Splice Strand
3R 6150575..6151048 908..1380 99 <- Minus
3R 6156166..6157056 17..907 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:51:35 Download gff for BO12011.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 1976297..1976770 908..1380 99 <- Minus
arm_3R 1981888..1982778 17..907 100   Minus

BO12011.pep Sequence

Translation from 16 to 1396

> BO12011.pep
MVLATPPVSKGGNAGGLFMDQYQQYAAHCETADSGNGSDLESTGLPTKPD
DSEESGPSSLGSDSMHGSSTEYVRQSASQPSGQRQRQKSLRVLGALLPDS
LLRDIRDRRSTEYVVQFSQPEDEEKIQVPDKIPEKPSPFRLARESLSEDK
IEELRAAVERANFVQTGEETLDSIDATSQSLPASSNIGGHRGNINYKYAD
DQYYSFHINEHENFGARSARSGDEADHSTGAGSEAGSDSGILTEQQDLFA
GYRDVRCGASSTQSTIRSAKGTVRGVKNRVRNGIATFLQLQQQPNAKNFK
EKDLGKVVLYTTSMGIIRETYTKCANVKQILRTLLVKFEERDVFMSVEYQ
AEMRQRMQSGQVRVPQLYVEGQHIGDAETVERMNESGELRQLLKPYKSMA
STYTCQTCGGYRLLPCPSCNGSKKSVHRNHFTAEFVALKCMNCDEVGLVK
CHNCASFLDH

BO12011.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 00:23:43
Subject Length Description Subject Range Query Range Score Percent Strand
CG31559-PA 454 CG31559-PA 1..454 1..454 2353 100 Plus
CG12206-PC 582 CG12206-PC 208..582 19..454 950 48.3 Plus
CG12206-PB 582 CG12206-PB 208..582 19..454 950 48.3 Plus
CG12206-PA 582 CG12206-PA 208..582 19..454 950 48.3 Plus