Clone Sequence Records
BO12017.3prime Sequence
925 bp (831 high quality bases) assembled on 2006-04-20
> BO12017.3prime
ATGGTCTAGAAAGCTTGCTGCTACGATCTTGTGGGGCTGCATCCACTTTT
TCATGTAGTAGCAGAATAAAGTTGAAATGTAGAGTAGGATCATCAACGCG
CAGGTGACCGCGAGAGCTAGGACCGATGTCTTCGTGGGGCATGGCTCAAT
GATGGTAACAGTTTTGTCTTTGGCGAAGTCTGTGCTGGGATCTGCCTTAA
AAAATTCGCGCTTTTCATCGCCGAAGTCTAAAACGAGGATCTCCTGCGAG
ATGTTCATATCGTCCTCGCTCTTGGTATCGTTGCTCTCGATAGAGCGACG
ACGCCGTCTCCCCAAAGATTCGAATGAATCCATGTTCCATTCGCACACAG
CCGGCTCACATGGACCCAAGCAGTACTTGACATTGCATTGGAAGATCACG
CCGTAGCTCTCCGTGAATCGGAACGCCTCGTATGTAGATTGCAAAGCATT
GCCGTCGGCGGTGAAGCCGGGGAAGATGGTGGGATCAGTGGGGCAGCCGT
CATCGTCGATGATCTTAAAGCTGGTGCGGGCATCCTTAGCCATTGCCACA
CAAGATCGAGCAAAAATGCCATAGGGAGTGTCTTCAGGAATCTCGATGCG
GAAATTAAGACGATCTCCAATACGCACAGTCTCCACCTCACGCTGTCGTG
TGTCCAGGATGCGGATCCTTGGTGGTGGAGCTTCCGGTGACGAATTTATA
TGGATCATCTCCGGGTCACGGATCGGCATCATACCGAAGGTGATATTCTT
TGAGCTCATATCGTAAGTGCACTTAACCTTATAGATCTTGTCGGCCTTGG
TCATTACCACGCTGTGATGCTGCAAAACCACTGTGTTGGAGTAGACACCG
GTCACACTCTGCGTGGTACAATCCTGTCCAGCCATGGTCAAATCCCACCG
AAAAGCGTCAGAGTTAATAACATCG
BO12017.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:35:20
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG17131-PA | 2148 | SP71-RA | 1239..2145 | 925..19 | 4485 | 99.7 | Minus |
CG17131-PB | 2148 | SP71-RB | 1239..2145 | 925..19 | 4485 | 99.7 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 01:17:36
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
tyn-RF | 3612 | CG17131-RF | 2003..2909 | 925..19 | 4505 | 99.8 | Minus |
tyn-RE | 3541 | CG17131-RE | 1932..2838 | 925..19 | 4505 | 99.8 | Minus |
tyn-RD | 3521 | CG17131-RD | 1912..2818 | 925..19 | 4505 | 99.8 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 01:17:31
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 198052..198346 | 578..284 | 1475 | 100 | Minus |
X | 23542271 | X | 197714..197988 | 853..579 | 1375 | 100 | Minus |
X | 23542271 | X | 198608..198758 | 169..19 | 755 | 100 | Minus |
X | 23542271 | X | 198432..198549 | 285..168 | 590 | 100 | Minus |
X | 23542271 | X | 197580..197652 | 925..853 | 335 | 97.3 | Minus |
Blast to na_te.dros performed on 2015-02-12 01:17:33 has no hits.
BO12017.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:23:29 Download gff for
BO12017.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17131-PA | 1239..2148 | 15..925 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 04:54:01 Download gff for
BO12017.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17131-PB | 1239..2148 | 15..925 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 13:25:03 Download gff for
BO12017.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
tyn-RB | 1677..2589 | 11..925 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 05:25:59 Download gff for
BO12017.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
tyn-RD | 1912..2824 | 11..925 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 05:25:59 Download gff for
BO12017.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 197580..197652 | 853..925 | 97 | -> | Minus |
X | 197715..197988 | 579..852 | 100 | -> | Minus |
X | 198052..198346 | 284..578 | 100 | -> | Minus |
X | 198434..198549 | 168..283 | 100 | -> | Minus |
X | 198610..198764 | 11..167 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 13:25:03 Download gff for
BO12017.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 95438..95553 | 168..283 | 100 | -> | Minus |
arm_X | 95614..95768 | 11..167 | 98 | | Minus |
arm_X | 94584..94656 | 853..925 | 97 | -> | Minus |
arm_X | 94719..94992 | 579..852 | 100 | -> | Minus |
arm_X | 95056..95350 | 284..578 | 100 | -> | Minus |
BO12017.5prime Sequence
900 bp (820 high quality bases) assembled on 2006-04-18
> BO12017.5prime
GAAGTTATCAGTCGACATGCAGTCAACCCAAAGTAAGAGTGATCGATCTT
CGATGCACAGGGGCCCTCTACTTCTCTGCGCCGTGATGGTCGTCCTGGTG
ACTTTGCCTGAACAGATAAATGCTCGTATGGCATTTGAAAAGCTAACGGA
CTTTGATTTTCCGGGCAACACGTATTACAGCGTGAAAAACCTTTCACTGT
ATGAGTGTCAAGGATGGTGTCGCGAGGAGGCAGATTGCCAAGCGGCGGCC
TTTAGTTTTGTGGTTAACCCTCTGTCGCCTTCGCAAGAGACCCACTGTCA
ATTGCAGAACGACTCCTCCGCAGCCAATCCTTCGGCAGCTCCGCAAAGAA
GCGCAAACATGTACTACATGATAAAATTGCAGCTGCGCAGCGAGAATGTG
TGCCACCGACCGTGGAGTTTCGAGAGGGTTCCAAACAAGGTGATCCGCGG
CCTGGACAATGCACTAATATACACCAGTACAAAAGAGGCCTGCTTATCAG
CTTGCCTCAACGAAAGACGATTCGTATGCCGATCTGTGGAGTATGATTAT
AACAACATGAAGTGTGTGCTCAGTGATTCGGATAGACGCAGCTCTGGACA
GTTTGTTCAACTAGTGGATGCTCAGGGTACGGATTACTTTGAGAATTTGT
GTTTAAAGCCGGCTCAGGCCTGTAAGAATAACCGTTCGTTTGGCAATTCC
CAAAAAATGGGGGTCTCCGAAGAGAAGGTTGCCCAATACGTTGGTCTGCA
CTACTATACTGACAAGGAACTCCAAGTGACCTCAGAATCCGCCTGCCGTT
TGGCATGTGAAATTGAATCTGAGTTCCTGTGCCGCTCCTTCCCTGTACTG
GGTCAACCCCAAGGATCCCAGTACAACTGTAGGCTATATCATTTGGATAT
BO12017.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:35:21
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG17131-PA | 2148 | SP71-RA | 1..826 | 17..842 | 4130 | 100 | Plus |
CG17131-PB | 2148 | SP71-RB | 1..826 | 17..842 | 4130 | 100 | Plus |
CG17131-PA | 2148 | SP71-RA | 832..882 | 848..898 | 255 | 100 | Plus |
CG17131-PB | 2148 | SP71-RB | 832..882 | 848..898 | 255 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 07:19:54
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
tyn-RF | 3612 | CG17131-RF | 765..1646 | 17..898 | 4365 | 99.8 | Plus |
tyn-RE | 3541 | CG17131-RE | 694..1575 | 17..898 | 4365 | 99.8 | Plus |
tyn-RD | 3521 | CG17131-RD | 674..1555 | 17..898 | 4365 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 07:19:48
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 196281..197162 | 17..898 | 4335 | 99.4 | Plus |
Blast to na_te.dros performed on 2015-02-10 07:19:51 has no hits.
BO12017.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:23:30 Download gff for
BO12017.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17131-PA | 1..885 | 17..900 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 04:54:03 Download gff for
BO12017.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17131-PB | 1..885 | 17..900 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-13 09:31:03 Download gff for
BO12017.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
tyn-RB | 433..1323 | 7..900 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 10:49:01 Download gff for
BO12017.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
tyn-RD | 668..1558 | 7..900 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 10:49:01 Download gff for
BO12017.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 196269..197165 | 5..900 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-13 09:31:03 Download gff for
BO12017.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 93273..94169 | 5..900 | 99 | | Plus |
BO12017.complete Sequence
2179 bp assembled on 2008-01-17
GenBank Submission: FJ632281
> BO12017.complete
GAAGTTATCAGTCGACATGCAGTCAACCCAAAGTAAGAGTGATCGATCTT
CGATGCACAGGGGCCCTCTACTTCTCTGCGCCGTGATGGTCGTCCTGGTG
ACTTTGCCTGAACAGATAAATGCTCGTATGGCATTTGAAAAGCTAACGGA
CTTTGATTTTCCGGGCAACACGTATTACAGCGTGAAAAACCTTTCACTGT
ATGAGTGTCAAGGATGGTGTCGCGAGGAGGCAGATTGCCAAGCGGCGGCC
TTTAGTTTTGTGGTTAACCCTCTGTCGCCTTCGCAAGAGACCCACTGTCA
ATTGCAGAACGACTCCTCCGCAGCCAATCCTTCGGCAGCTCCGCAAAGAA
GCGCAAACATGTACTACATGATAAAATTGCAGCTGCGCAGCGAGAATGTG
TGCCACCGACCGTGGAGTTTCGAGAGGGTTCCAAACAAGGTGATCCGCGG
CCTGGACAATGCACTAATATACACCAGTACAAAAGAGGCCTGCTTATCAG
CTTGCCTCAACGAAAGACGATTCGTATGCCGATCTGTGGAGTATGATTAT
AACAACATGAAGTGTGTGCTCAGTGATTCGGATAGACGCAGCTCTGGACA
GTTTGTTCAACTAGTGGATGCTCAGGGTACGGATTACTTTGAGAATTTGT
GTTTAAAGCCGGCTCAGGCCTGTAAGAATAACCGTTCGTTTGGCAATTCC
CAAAAAATGGGGGTCTCCGAAGAGAAGGTTGCCCAATACGTTGGTCTGCA
CTACTATACTGACAAGGAACTCCAAGTGACCTCAGAATCCGCCTGCCGTT
TGGCATGTGAAATTGAATCTGAGTTCCTGTGCCGCTCCTTCCTGTACCTG
GGTCAACCCCAAGGATCCCAGTACAACTGTAGGCTATATCATTTGGATCA
TAAGACCCTGCCCGATGGTCCATCCACCTATTTGAACCATGAGCGCCCAC
TGATCGATCATGGAGAGCCCATTGGTCAGTACTTTGAAAACCAGTGCGAG
AAGGCCGCCGGTTTGGGAGCTGGATCACCACCGGGAACTCTGGATAAAAT
CGATACTCTACCCGTTAGCCTAGACACCATTGAAGATCCCAACCTGACCA
ACTTAACCCGCAATGACGTTAACTGTGACAAGACGGGAACTTGCTATGAT
GTTTCTGTTCACTGCAAGGACACTAGAATTGCCGTACAGGTCCGCACCAA
CAAGCCGTTCAATGGACGCATTTATGCTTTGGGACGCTCTGAGACCTGCA
ACATCGATGTTATTAACTCTGACGCTTTTCGGTTGGATTTGACCATGGCT
GGACAGGATTGTAACACGCAGAGTGTGACCGGTGTCTACTCCAACACAGT
GGTTTTGCAGCATCACAGCGTGGTAATGACCAAGGCCGACAAGATCTATA
AGGTTAAGTGCACTTACGATATGAGCTCAAAGAATATCACCTTCGGTATG
ATGCCGATCCGTGACCCGGAGATGATCCATATAAATTCGTCACCGGAAGC
TCCACCACCAAGGATCCGCATCCTGGACACACGACAGCGTGAGGTGGAGA
CTGTGCGTATTGGAGATCGTCTTAATTTCCGCATCGAGATTCCTGAAGAC
ACTCCCTATGGCATTTTTGCTCGATCTTGTGTGGCAATGGCTAAGGATGC
CCGCACCAGCTTTAAGATCATCGACGATGACGGCTGCCCCACTGATCCCA
CCATCTTCCCCGGCTTCACCGCCGACGGCAATGCTTTGCAATCTACATAC
GAGGCGTTCCGATTCACGGAGAGCTACGGCGTGATCTTCCAATGCAATGT
CAAGTACTGCTTGGGTCCATGTGAGCCGGCTGTGTGCGAATGGAACATGG
ATTCATTCGAATCTTTGGGGAGACGGCGTCGTCGCTCTATCGAGAGCAAC
GATACCAAGAGCGAGGACGATATGAACATCTCGCAGGAGATCCTCGTTTT
AGACTTCGGCGATGAAAAGCGCGAATTTTTTAAGGCAGATCCCAGCACAG
ACTTCGCCAAAGACAAAACTGTTACCATCATTGAGCCATGCCCCACGAAG
ACATCGGTCCTAGCTCTCGCGGTCACCTGCGCGTTGATGATCCTACTCTA
CATTTCAACTTTATTCTGCTACTACATGAAAAAGTGGATGCAGCCCCACA
AGATCGTAGCAGCAAGCTTTCTAGACCAT
BO12017.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 10:52:16
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
tyn-RF | 2148 | CG17131-PF | 1..2145 | 17..2161 | 10725 | 100 | Plus |
tyn-RE | 2148 | CG17131-PE | 1..2145 | 17..2161 | 10725 | 100 | Plus |
tyn-RD | 2148 | CG17131-PD | 1..2145 | 17..2161 | 10725 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 10:52:17
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
tyn-RF | 3612 | CG17131-RF | 765..2909 | 17..2161 | 10725 | 100 | Plus |
tyn-RE | 3541 | CG17131-RE | 694..2838 | 17..2161 | 10725 | 100 | Plus |
tyn-RD | 3521 | CG17131-RD | 674..2818 | 17..2161 | 10725 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 10:52:14
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 196281..197415 | 17..1151 | 5675 | 100 | Plus |
X | 23542271 | X | 198052..198346 | 1602..1896 | 1475 | 100 | Plus |
X | 23542271 | X | 197714..197988 | 1327..1601 | 1375 | 100 | Plus |
X | 23542271 | X | 197476..197652 | 1151..1327 | 885 | 100 | Plus |
X | 23542271 | X | 198608..198758 | 2011..2161 | 755 | 100 | Plus |
X | 23542271 | X | 198432..198549 | 1895..2012 | 590 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 10:52:15 has no hits.
BO12017.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 13:59:39 Download gff for
BO12017.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
SP71-RB | 1..2148 | 17..2165 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-07-28 15:33:28 Download gff for
BO12017.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
SP71-RB | 341..2485 | 17..2163 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:42:27 Download gff for
BO12017.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
tyn-RB | 439..2583 | 17..2163 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 13:59:39 Download gff for
BO12017.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
SP71-RB | 335..2491 | 7..2169 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:32:54 Download gff for
BO12017.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
tyn-RD | 674..2818 | 17..2163 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 11:32:54 Download gff for
BO12017.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 196281..197415 | 17..1151 | 100 | -> | Plus |
X | 197477..197652 | 1152..1327 | 100 | -> | Plus |
X | 197715..197988 | 1328..1601 | 100 | -> | Plus |
X | 198052..198346 | 1602..1896 | 100 | -> | Plus |
X | 198434..198549 | 1897..2012 | 100 | -> | Plus |
X | 198610..198758 | 2013..2163 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:42:27 Download gff for
BO12017.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 94719..94992 | 1328..1601 | 100 | -> | Plus |
arm_X | 93285..94419 | 17..1151 | 100 | -> | Plus |
arm_X | 94481..94656 | 1152..1327 | 100 | -> | Plus |
arm_X | 95056..95350 | 1602..1896 | 100 | -> | Plus |
arm_X | 95438..95553 | 1897..2012 | 100 | -> | Plus |
arm_X | 95614..95762 | 2013..2163 | 98 | | Plus |
BO12017.pep Sequence
Translation from 16 to 2179
> BO12017.pep
MQSTQSKSDRSSMHRGPLLLCAVMVVLVTLPEQINARMAFEKLTDFDFPG
NTYYSVKNLSLYECQGWCREEADCQAAAFSFVVNPLSPSQETHCQLQNDS
SAANPSAAPQRSANMYYMIKLQLRSENVCHRPWSFERVPNKVIRGLDNAL
IYTSTKEACLSACLNERRFVCRSVEYDYNNMKCVLSDSDRRSSGQFVQLV
DAQGTDYFENLCLKPAQACKNNRSFGNSQKMGVSEEKVAQYVGLHYYTDK
ELQVTSESACRLACEIESEFLCRSFLYLGQPQGSQYNCRLYHLDHKTLPD
GPSTYLNHERPLIDHGEPIGQYFENQCEKAAGLGAGSPPGTLDKIDTLPV
SLDTIEDPNLTNLTRNDVNCDKTGTCYDVSVHCKDTRIAVQVRTNKPFNG
RIYALGRSETCNIDVINSDAFRLDLTMAGQDCNTQSVTGVYSNTVVLQHH
SVVMTKADKIYKVKCTYDMSSKNITFGMMPIRDPEMIHINSSPEAPPPRI
RILDTRQREVETVRIGDRLNFRIEIPEDTPYGIFARSCVAMAKDARTSFK
IIDDDGCPTDPTIFPGFTADGNALQSTYEAFRFTESYGVIFQCNVKYCLG
PCEPAVCEWNMDSFESLGRRRRRSIESNDTKSEDDMNISQEILVLDFGDE
KREFFKADPSTDFAKDKTVTIIEPCPTKTSVLALAVTCALMILLYISTLF
CYYMKKWMQPHKIVAASFLDH
BO12017.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 02:27:02
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
tyn-PF | 715 | CG17131-PF | 1..715 | 1..715 | 3812 | 100 | Plus |
tyn-PE | 715 | CG17131-PE | 1..715 | 1..715 | 3812 | 100 | Plus |
tyn-PD | 715 | CG17131-PD | 1..715 | 1..715 | 3812 | 100 | Plus |
tyn-PC | 715 | CG17131-PC | 1..715 | 1..715 | 3812 | 100 | Plus |
tyn-PB | 715 | CG17131-PB | 1..715 | 1..715 | 3812 | 100 | Plus |