Clone BO12017 Report

Search the DGRC for BO12017

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:120
Well:17
Vector:pDNR-Dual
Associated Gene/Transcripttyn-RA
Protein status:BO12017.pep:
Sequenced Size:2179

Clone Sequence Records

BO12017.3prime Sequence

925 bp (831 high quality bases) assembled on 2006-04-20

> BO12017.3prime
ATGGTCTAGAAAGCTTGCTGCTACGATCTTGTGGGGCTGCATCCACTTTT
TCATGTAGTAGCAGAATAAAGTTGAAATGTAGAGTAGGATCATCAACGCG
CAGGTGACCGCGAGAGCTAGGACCGATGTCTTCGTGGGGCATGGCTCAAT
GATGGTAACAGTTTTGTCTTTGGCGAAGTCTGTGCTGGGATCTGCCTTAA
AAAATTCGCGCTTTTCATCGCCGAAGTCTAAAACGAGGATCTCCTGCGAG
ATGTTCATATCGTCCTCGCTCTTGGTATCGTTGCTCTCGATAGAGCGACG
ACGCCGTCTCCCCAAAGATTCGAATGAATCCATGTTCCATTCGCACACAG
CCGGCTCACATGGACCCAAGCAGTACTTGACATTGCATTGGAAGATCACG
CCGTAGCTCTCCGTGAATCGGAACGCCTCGTATGTAGATTGCAAAGCATT
GCCGTCGGCGGTGAAGCCGGGGAAGATGGTGGGATCAGTGGGGCAGCCGT
CATCGTCGATGATCTTAAAGCTGGTGCGGGCATCCTTAGCCATTGCCACA
CAAGATCGAGCAAAAATGCCATAGGGAGTGTCTTCAGGAATCTCGATGCG
GAAATTAAGACGATCTCCAATACGCACAGTCTCCACCTCACGCTGTCGTG
TGTCCAGGATGCGGATCCTTGGTGGTGGAGCTTCCGGTGACGAATTTATA
TGGATCATCTCCGGGTCACGGATCGGCATCATACCGAAGGTGATATTCTT
TGAGCTCATATCGTAAGTGCACTTAACCTTATAGATCTTGTCGGCCTTGG
TCATTACCACGCTGTGATGCTGCAAAACCACTGTGTTGGAGTAGACACCG
GTCACACTCTGCGTGGTACAATCCTGTCCAGCCATGGTCAAATCCCACCG
AAAAGCGTCAGAGTTAATAACATCG

BO12017.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:35:20
Subject Length Description Subject Range Query Range Score Percent Strand
CG17131-PA 2148 SP71-RA 1239..2145 925..19 4485 99.7 Minus
CG17131-PB 2148 SP71-RB 1239..2145 925..19 4485 99.7 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 01:17:36
Subject Length Description Subject Range Query Range Score Percent Strand
tyn-RF 3612 CG17131-RF 2003..2909 925..19 4505 99.8 Minus
tyn-RE 3541 CG17131-RE 1932..2838 925..19 4505 99.8 Minus
tyn-RD 3521 CG17131-RD 1912..2818 925..19 4505 99.8 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 01:17:31
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 198052..198346 578..284 1475 100 Minus
X 23542271 X 197714..197988 853..579 1375 100 Minus
X 23542271 X 198608..198758 169..19 755 100 Minus
X 23542271 X 198432..198549 285..168 590 100 Minus
X 23542271 X 197580..197652 925..853 335 97.3 Minus
Blast to na_te.dros performed on 2015-02-12 01:17:33 has no hits.

BO12017.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:23:29 Download gff for BO12017.3prime
Subject Subject Range Query Range Percent Splice Strand
CG17131-PA 1239..2148 15..925 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 04:54:01 Download gff for BO12017.3prime
Subject Subject Range Query Range Percent Splice Strand
CG17131-PB 1239..2148 15..925 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 13:25:03 Download gff for BO12017.3prime
Subject Subject Range Query Range Percent Splice Strand
tyn-RB 1677..2589 11..925 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 05:25:59 Download gff for BO12017.3prime
Subject Subject Range Query Range Percent Splice Strand
tyn-RD 1912..2824 11..925 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 05:25:59 Download gff for BO12017.3prime
Subject Subject Range Query Range Percent Splice Strand
X 197580..197652 853..925 97 -> Minus
X 197715..197988 579..852 100 -> Minus
X 198052..198346 284..578 100 -> Minus
X 198434..198549 168..283 100 -> Minus
X 198610..198764 11..167 98   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 13:25:03 Download gff for BO12017.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 95438..95553 168..283 100 -> Minus
arm_X 95614..95768 11..167 98   Minus
arm_X 94584..94656 853..925 97 -> Minus
arm_X 94719..94992 579..852 100 -> Minus
arm_X 95056..95350 284..578 100 -> Minus

BO12017.5prime Sequence

900 bp (820 high quality bases) assembled on 2006-04-18

> BO12017.5prime
GAAGTTATCAGTCGACATGCAGTCAACCCAAAGTAAGAGTGATCGATCTT
CGATGCACAGGGGCCCTCTACTTCTCTGCGCCGTGATGGTCGTCCTGGTG
ACTTTGCCTGAACAGATAAATGCTCGTATGGCATTTGAAAAGCTAACGGA
CTTTGATTTTCCGGGCAACACGTATTACAGCGTGAAAAACCTTTCACTGT
ATGAGTGTCAAGGATGGTGTCGCGAGGAGGCAGATTGCCAAGCGGCGGCC
TTTAGTTTTGTGGTTAACCCTCTGTCGCCTTCGCAAGAGACCCACTGTCA
ATTGCAGAACGACTCCTCCGCAGCCAATCCTTCGGCAGCTCCGCAAAGAA
GCGCAAACATGTACTACATGATAAAATTGCAGCTGCGCAGCGAGAATGTG
TGCCACCGACCGTGGAGTTTCGAGAGGGTTCCAAACAAGGTGATCCGCGG
CCTGGACAATGCACTAATATACACCAGTACAAAAGAGGCCTGCTTATCAG
CTTGCCTCAACGAAAGACGATTCGTATGCCGATCTGTGGAGTATGATTAT
AACAACATGAAGTGTGTGCTCAGTGATTCGGATAGACGCAGCTCTGGACA
GTTTGTTCAACTAGTGGATGCTCAGGGTACGGATTACTTTGAGAATTTGT
GTTTAAAGCCGGCTCAGGCCTGTAAGAATAACCGTTCGTTTGGCAATTCC
CAAAAAATGGGGGTCTCCGAAGAGAAGGTTGCCCAATACGTTGGTCTGCA
CTACTATACTGACAAGGAACTCCAAGTGACCTCAGAATCCGCCTGCCGTT
TGGCATGTGAAATTGAATCTGAGTTCCTGTGCCGCTCCTTCCCTGTACTG
GGTCAACCCCAAGGATCCCAGTACAACTGTAGGCTATATCATTTGGATAT

BO12017.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:35:21
Subject Length Description Subject Range Query Range Score Percent Strand
CG17131-PA 2148 SP71-RA 1..826 17..842 4130 100 Plus
CG17131-PB 2148 SP71-RB 1..826 17..842 4130 100 Plus
CG17131-PA 2148 SP71-RA 832..882 848..898 255 100 Plus
CG17131-PB 2148 SP71-RB 832..882 848..898 255 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 07:19:54
Subject Length Description Subject Range Query Range Score Percent Strand
tyn-RF 3612 CG17131-RF 765..1646 17..898 4365 99.8 Plus
tyn-RE 3541 CG17131-RE 694..1575 17..898 4365 99.8 Plus
tyn-RD 3521 CG17131-RD 674..1555 17..898 4365 99.8 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 07:19:48
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 196281..197162 17..898 4335 99.4 Plus
Blast to na_te.dros performed on 2015-02-10 07:19:51 has no hits.

BO12017.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:23:30 Download gff for BO12017.5prime
Subject Subject Range Query Range Percent Splice Strand
CG17131-PA 1..885 17..900 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 04:54:03 Download gff for BO12017.5prime
Subject Subject Range Query Range Percent Splice Strand
CG17131-PB 1..885 17..900 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-13 09:31:03 Download gff for BO12017.5prime
Subject Subject Range Query Range Percent Splice Strand
tyn-RB 433..1323 7..900 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 10:49:01 Download gff for BO12017.5prime
Subject Subject Range Query Range Percent Splice Strand
tyn-RD 668..1558 7..900 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 10:49:01 Download gff for BO12017.5prime
Subject Subject Range Query Range Percent Splice Strand
X 196269..197165 5..900 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-13 09:31:03 Download gff for BO12017.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 93273..94169 5..900 99   Plus

BO12017.complete Sequence

2179 bp assembled on 2008-01-17

GenBank Submission: FJ632281

> BO12017.complete
GAAGTTATCAGTCGACATGCAGTCAACCCAAAGTAAGAGTGATCGATCTT
CGATGCACAGGGGCCCTCTACTTCTCTGCGCCGTGATGGTCGTCCTGGTG
ACTTTGCCTGAACAGATAAATGCTCGTATGGCATTTGAAAAGCTAACGGA
CTTTGATTTTCCGGGCAACACGTATTACAGCGTGAAAAACCTTTCACTGT
ATGAGTGTCAAGGATGGTGTCGCGAGGAGGCAGATTGCCAAGCGGCGGCC
TTTAGTTTTGTGGTTAACCCTCTGTCGCCTTCGCAAGAGACCCACTGTCA
ATTGCAGAACGACTCCTCCGCAGCCAATCCTTCGGCAGCTCCGCAAAGAA
GCGCAAACATGTACTACATGATAAAATTGCAGCTGCGCAGCGAGAATGTG
TGCCACCGACCGTGGAGTTTCGAGAGGGTTCCAAACAAGGTGATCCGCGG
CCTGGACAATGCACTAATATACACCAGTACAAAAGAGGCCTGCTTATCAG
CTTGCCTCAACGAAAGACGATTCGTATGCCGATCTGTGGAGTATGATTAT
AACAACATGAAGTGTGTGCTCAGTGATTCGGATAGACGCAGCTCTGGACA
GTTTGTTCAACTAGTGGATGCTCAGGGTACGGATTACTTTGAGAATTTGT
GTTTAAAGCCGGCTCAGGCCTGTAAGAATAACCGTTCGTTTGGCAATTCC
CAAAAAATGGGGGTCTCCGAAGAGAAGGTTGCCCAATACGTTGGTCTGCA
CTACTATACTGACAAGGAACTCCAAGTGACCTCAGAATCCGCCTGCCGTT
TGGCATGTGAAATTGAATCTGAGTTCCTGTGCCGCTCCTTCCTGTACCTG
GGTCAACCCCAAGGATCCCAGTACAACTGTAGGCTATATCATTTGGATCA
TAAGACCCTGCCCGATGGTCCATCCACCTATTTGAACCATGAGCGCCCAC
TGATCGATCATGGAGAGCCCATTGGTCAGTACTTTGAAAACCAGTGCGAG
AAGGCCGCCGGTTTGGGAGCTGGATCACCACCGGGAACTCTGGATAAAAT
CGATACTCTACCCGTTAGCCTAGACACCATTGAAGATCCCAACCTGACCA
ACTTAACCCGCAATGACGTTAACTGTGACAAGACGGGAACTTGCTATGAT
GTTTCTGTTCACTGCAAGGACACTAGAATTGCCGTACAGGTCCGCACCAA
CAAGCCGTTCAATGGACGCATTTATGCTTTGGGACGCTCTGAGACCTGCA
ACATCGATGTTATTAACTCTGACGCTTTTCGGTTGGATTTGACCATGGCT
GGACAGGATTGTAACACGCAGAGTGTGACCGGTGTCTACTCCAACACAGT
GGTTTTGCAGCATCACAGCGTGGTAATGACCAAGGCCGACAAGATCTATA
AGGTTAAGTGCACTTACGATATGAGCTCAAAGAATATCACCTTCGGTATG
ATGCCGATCCGTGACCCGGAGATGATCCATATAAATTCGTCACCGGAAGC
TCCACCACCAAGGATCCGCATCCTGGACACACGACAGCGTGAGGTGGAGA
CTGTGCGTATTGGAGATCGTCTTAATTTCCGCATCGAGATTCCTGAAGAC
ACTCCCTATGGCATTTTTGCTCGATCTTGTGTGGCAATGGCTAAGGATGC
CCGCACCAGCTTTAAGATCATCGACGATGACGGCTGCCCCACTGATCCCA
CCATCTTCCCCGGCTTCACCGCCGACGGCAATGCTTTGCAATCTACATAC
GAGGCGTTCCGATTCACGGAGAGCTACGGCGTGATCTTCCAATGCAATGT
CAAGTACTGCTTGGGTCCATGTGAGCCGGCTGTGTGCGAATGGAACATGG
ATTCATTCGAATCTTTGGGGAGACGGCGTCGTCGCTCTATCGAGAGCAAC
GATACCAAGAGCGAGGACGATATGAACATCTCGCAGGAGATCCTCGTTTT
AGACTTCGGCGATGAAAAGCGCGAATTTTTTAAGGCAGATCCCAGCACAG
ACTTCGCCAAAGACAAAACTGTTACCATCATTGAGCCATGCCCCACGAAG
ACATCGGTCCTAGCTCTCGCGGTCACCTGCGCGTTGATGATCCTACTCTA
CATTTCAACTTTATTCTGCTACTACATGAAAAAGTGGATGCAGCCCCACA
AGATCGTAGCAGCAAGCTTTCTAGACCAT

BO12017.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 10:52:16
Subject Length Description Subject Range Query Range Score Percent Strand
tyn-RF 2148 CG17131-PF 1..2145 17..2161 10725 100 Plus
tyn-RE 2148 CG17131-PE 1..2145 17..2161 10725 100 Plus
tyn-RD 2148 CG17131-PD 1..2145 17..2161 10725 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 10:52:17
Subject Length Description Subject Range Query Range Score Percent Strand
tyn-RF 3612 CG17131-RF 765..2909 17..2161 10725 100 Plus
tyn-RE 3541 CG17131-RE 694..2838 17..2161 10725 100 Plus
tyn-RD 3521 CG17131-RD 674..2818 17..2161 10725 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 10:52:14
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 196281..197415 17..1151 5675 100 Plus
X 23542271 X 198052..198346 1602..1896 1475 100 Plus
X 23542271 X 197714..197988 1327..1601 1375 100 Plus
X 23542271 X 197476..197652 1151..1327 885 100 Plus
X 23542271 X 198608..198758 2011..2161 755 100 Plus
X 23542271 X 198432..198549 1895..2012 590 100 Plus
Blast to na_te.dros performed on 2014-11-27 10:52:15 has no hits.

BO12017.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 13:59:39 Download gff for BO12017.complete
Subject Subject Range Query Range Percent Splice Strand
SP71-RB 1..2148 17..2165 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-07-28 15:33:28 Download gff for BO12017.complete
Subject Subject Range Query Range Percent Splice Strand
SP71-RB 341..2485 17..2163 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:42:27 Download gff for BO12017.complete
Subject Subject Range Query Range Percent Splice Strand
tyn-RB 439..2583 17..2163 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 13:59:39 Download gff for BO12017.complete
Subject Subject Range Query Range Percent Splice Strand
SP71-RB 335..2491 7..2169 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:32:54 Download gff for BO12017.complete
Subject Subject Range Query Range Percent Splice Strand
tyn-RD 674..2818 17..2163 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 11:32:54 Download gff for BO12017.complete
Subject Subject Range Query Range Percent Splice Strand
X 196281..197415 17..1151 100 -> Plus
X 197477..197652 1152..1327 100 -> Plus
X 197715..197988 1328..1601 100 -> Plus
X 198052..198346 1602..1896 100 -> Plus
X 198434..198549 1897..2012 100 -> Plus
X 198610..198758 2013..2163 98   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:42:27 Download gff for BO12017.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 94719..94992 1328..1601 100 -> Plus
arm_X 93285..94419 17..1151 100 -> Plus
arm_X 94481..94656 1152..1327 100 -> Plus
arm_X 95056..95350 1602..1896 100 -> Plus
arm_X 95438..95553 1897..2012 100 -> Plus
arm_X 95614..95762 2013..2163 98   Plus

BO12017.pep Sequence

Translation from 16 to 2179

> BO12017.pep
MQSTQSKSDRSSMHRGPLLLCAVMVVLVTLPEQINARMAFEKLTDFDFPG
NTYYSVKNLSLYECQGWCREEADCQAAAFSFVVNPLSPSQETHCQLQNDS
SAANPSAAPQRSANMYYMIKLQLRSENVCHRPWSFERVPNKVIRGLDNAL
IYTSTKEACLSACLNERRFVCRSVEYDYNNMKCVLSDSDRRSSGQFVQLV
DAQGTDYFENLCLKPAQACKNNRSFGNSQKMGVSEEKVAQYVGLHYYTDK
ELQVTSESACRLACEIESEFLCRSFLYLGQPQGSQYNCRLYHLDHKTLPD
GPSTYLNHERPLIDHGEPIGQYFENQCEKAAGLGAGSPPGTLDKIDTLPV
SLDTIEDPNLTNLTRNDVNCDKTGTCYDVSVHCKDTRIAVQVRTNKPFNG
RIYALGRSETCNIDVINSDAFRLDLTMAGQDCNTQSVTGVYSNTVVLQHH
SVVMTKADKIYKVKCTYDMSSKNITFGMMPIRDPEMIHINSSPEAPPPRI
RILDTRQREVETVRIGDRLNFRIEIPEDTPYGIFARSCVAMAKDARTSFK
IIDDDGCPTDPTIFPGFTADGNALQSTYEAFRFTESYGVIFQCNVKYCLG
PCEPAVCEWNMDSFESLGRRRRRSIESNDTKSEDDMNISQEILVLDFGDE
KREFFKADPSTDFAKDKTVTIIEPCPTKTSVLALAVTCALMILLYISTLF
CYYMKKWMQPHKIVAASFLDH

BO12017.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 02:27:02
Subject Length Description Subject Range Query Range Score Percent Strand
tyn-PF 715 CG17131-PF 1..715 1..715 3812 100 Plus
tyn-PE 715 CG17131-PE 1..715 1..715 3812 100 Plus
tyn-PD 715 CG17131-PD 1..715 1..715 3812 100 Plus
tyn-PC 715 CG17131-PC 1..715 1..715 3812 100 Plus
tyn-PB 715 CG17131-PB 1..715 1..715 3812 100 Plus