Clone BO12023 Report

Search the DGRC for BO12023

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:120
Well:23
Vector:pDNR-Dual
Associated Gene/TranscriptCG13377-RA
Protein status:BO12023.pep: validated full length
Sequenced Size:1024

Clone Sequence Records

BO12023.3prime Sequence

845 bp (812 high quality bases) assembled on 2006-04-20

> BO12023.3prime
ATGGTCTAGAAAGCTTGCAACCGACTGACTGGCGCTCTCGCCGACTGTTG
AAGCTACCGGCCTCTGAAGTCGCAGCGAGGAGCGACATGGCAACGCAAAT
TGGTATTTGTTATGACTTAGAAGCGCATATCGCTGCTGCGGAACATAGTC
CCACAACGCCCGCTCGATCACATGAAGAGCGTCCGGACTGAGCACGTCCG
CTGTATACTGCGTAGGAGCCCCAACGACCAAGGACATGGTTTGTGCCACT
GGTGCCTTGTACAATGACTCCGCCGTCATGCCGCATGTATCCAAAGCGAC
CACACTGACGCCATAGGGATGCAGCTCCTTGCGCAGCTCTTCGGCACACT
TGTCTACGGCAACGCGTGAGGCGTTAAAGGCAACCAGTCCATCACCTTCG
TTTCGAGCATTTCCACCTCCACTTACTCCTCCCAAGTAAAGGAGTCTTCC
ACGTGTCGGACGGAGAAAACACACAAAGGCCTTGGCCACACGTAAGGTGC
CCAGGATGTTGGTTCTGAGCATGTGTTCCCACTGCTGGACATTCTGCGAT
TCAACCTGGCCTCGGAAAACACTGCCACTAGTGTTAATTACGGCCGCAAT
ACCGCGCTCATCTGCATTTAGATTAGCGCCTATAATAACGGTGGCCTCGC
GAAGCACATCCTCTCGGGTGACATCCAATCTCATCGGAATAATTGTGCCT
GCAATGGGTTCCTCACTGTACTCTCGGATCTTCATCCAACCGCAAAGAAG
TTTGGCGGGTAGCGAATCTTGGGCCTCTTTCATTCCAGCAAAAACCCGAT
AACCCTTGTTAGCCAAATGGGTGCACAATTGAAGACCCAATGCCG

BO12023.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:35:29
Subject Length Description Subject Range Query Range Score Percent Strand
CG13377-PA 993 CG13377-RA 166..990 843..19 4125 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 16:27:59
Subject Length Description Subject Range Query Range Score Percent Strand
CG13377-RB 1411 CG13377-RB 314..1138 843..19 4125 100 Minus
CG13377-RA 1601 CG13377-RA 504..1328 843..19 4125 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 16:27:51
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 258893..259496 240..843 3020 100 Plus
X 23542271 X 258608..258828 19..239 1105 100 Plus
Blast to na_te.dros performed on 2015-02-10 16:27:55 has no hits.

BO12023.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:23:41 Download gff for BO12023.3prime
Subject Subject Range Query Range Percent Splice Strand
CG13377-PA 164..993 15..845 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 04:54:18 Download gff for BO12023.3prime
Subject Subject Range Query Range Percent Splice Strand
CG13377-PA 164..993 15..845 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-20 02:29:03 Download gff for BO12023.3prime
Subject Subject Range Query Range Percent Splice Strand
CG13377-RA 502..1336 10..845 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:49:03 Download gff for BO12023.3prime
Subject Subject Range Query Range Percent Splice Strand
CG13377-RA 502..1336 10..845 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:49:03 Download gff for BO12023.3prime
Subject Subject Range Query Range Percent Splice Strand
X 258600..258828 10..239 98 <- Plus
X 258893..259497 240..845 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-20 02:29:03 Download gff for BO12023.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 152633..152861 10..239 98 <- Plus
arm_X 152926..153530 240..845 99   Plus

BO12023.5prime Sequence

865 bp (813 high quality bases) assembled on 2006-04-18

> BO12023.5prime
GAAGTTATCAGTCGACATGGAGGCAATGACCATGCTGGTGTTGGGCTTCC
AGTTGCTTGCGCTTTTTTCGATCGCCGGCGCGCTGCTTATCTACCTGATT
TGTAAGGTGCGCGAGGATAGCGCATCTGCCAATGCGGATAGTCATCCCAG
TCGGGTGGTCCTGATAACCAGTGCGGATACCGCATTGGGTCTTCAATTGT
GCACCCATTTGGCTAACAAGGGTTATCGGGTTTTTGCTGGAATGAAAGAG
GCCCAAGATTCGCTACCCGCCAAACTTCTTTGCGGTTGGATGAAGATCCG
AGAGTACAGTGAGGAACCCATTGCAGGCACAATTATTCCGATGAGATTGG
ATGTCACCCGAGAGGATGTGCTTCGCGAGGCCACCGTTATTATAGGCGCT
AATCTAAATGCAGATGAGCGCGGTATTGCGGCCGTAATTAACACTAGTGG
CAGTGTTTTCCGAGGCCAGGTTGAATCGCAGAATGTCCAGCAGTGGGAAC
ACATGCTCAGAACCAACATCCTGGGCACCTTACGTGTGGCCAAGGCCTTT
GTGTGTTTTCTCCGTCCGACACGTGGAAGACTCCTTTACTTGGGAGGAGT
AAGTGGAGGTGGAAATGCTCGAAACGAAGGTGATGGACTGGTTGCCTTTA
ACGCCTCACGCGTTGCCGTAGACAAGTGTGCCAAAGAGCTGCGCAAGGAG
CTGCATCCCTATGGCGTCAGTGTGGTCGCTTTGGATACATGCGGCATGAC
GGCGGAGTCATTGTACAAGGCACCAGTGGCACAAACCATGTCCTTGGTCG
TTGGGGCTCCTACGCAGTATACAGCGGACGTGCTCCGTCCGGACGCTCTT
CATGTGATCGAACGG

BO12023.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:35:29
Subject Length Description Subject Range Query Range Score Percent Strand
CG13377-PA 993 CG13377-RA 1..845 17..861 4175 99.7 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 20:58:35
Subject Length Description Subject Range Query Range Score Percent Strand
CG13377-RB 1411 CG13377-RB 149..997 17..865 4200 99.6 Plus
CG13377-RA 1601 CG13377-RA 339..1187 17..865 4200 99.6 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 20:58:31
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 258893..259661 785..17 3830 99.9 Minus
X 23542271 X 258749..258828 865..786 370 97.5 Minus
Blast to na_te.dros performed on 2015-02-10 20:58:33 has no hits.

BO12023.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:23:42 Download gff for BO12023.5prime
Subject Subject Range Query Range Percent Splice Strand
CG13377-PA 1..849 17..865 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 04:54:18 Download gff for BO12023.5prime
Subject Subject Range Query Range Percent Splice Strand
CG13377-PA 1..849 17..865 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 04:03:59 Download gff for BO12023.5prime
Subject Subject Range Query Range Percent Splice Strand
CG13377-RA 334..1187 8..865 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:37:20 Download gff for BO12023.5prime
Subject Subject Range Query Range Percent Splice Strand
CG13377-RA 334..1187 8..865 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:37:20 Download gff for BO12023.5prime
Subject Subject Range Query Range Percent Splice Strand
X 258749..258828 786..865 97 <- Minus
X 258893..259666 8..785 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 04:03:59 Download gff for BO12023.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 152782..152861 786..865 97 <- Minus
arm_X 152926..153699 8..785 99   Minus

BO12023.complete Sequence

1024 bp assembled on 2006-10-11

GenBank Submission: FJ632282

> BO12023.complete
GAAGTTATCAGTCGACATGGAGGCAATGACCATGCTGGTGTTGGGCTTCC
AGTTGCTTGCGCTTTTTTCGATCGCCGGCGCGCTGCTTATCTACCTGATT
TGTAAGGTGCGCGAGGATAGCGCATCTGCCAATGCGGATAGTCATCCCAG
TCGGGTGGTCCTGATAACCAGTGCGGATACCGCATTGGGTCTTCAATTGT
GCACCCATTTGGCTAACAAGGGTTATCGGGTTTTTGCTGGAATGAAAGAG
GCCCAAGATTCGCTACCCGCCAAACTTCTTTGCGGTTGGATGAAGATCCG
AGAGTACAGTGAGGAACCCATTGCAGGCACAATTATTCCGATGAGATTGG
ATGTCACCCGAGAGGATGTGCTTCGCGAGGCCACCGTTATTATAGGCGCT
AATCTAAATGCAGATGAGCGCGGTATTGCGGCCGTAATTAACACTAGTGG
CAGTGTTTTCCGAGGCCAGGTTGAATCGCAGAATGTCCAGCAGTGGGAAC
ACATGCTCAGAACCAACATCCTGGGCACCTTACGTGTGGCCAAGGCCTTT
GTGTGTTTTCTCCGTCCGACACGTGGAAGACTCCTTTACTTGGGAGGAGT
AAGTGGAGGTGGAAATGCTCGAAACGAAGGTGATGGACTGGTTGCCTTTA
ACGCCTCACGCGTTGCCGTAGACAAGTGTGCCGAAGAGCTGCGCAAGGAG
CTGCATCCCTATGGCGTCAGTGTGGTCGCTTTGGATACATGCGGCATGAC
GGCGGAGTCATTGTACAAGGCACCAGTGGCACAAACCATGTCCTTGGTCG
TTGGGGCTCCTACGCAGTATACAGCGGACGTGCTCAGTCCGGACGCTCTT
CATGTGATCGAGCGGGCGTTGTGGGACTATGTTCCGCAGCAGCGATATGC
GCTTCTAAGTCATAACAAATACCAATTTGCGTTGCCATGTCGCTCCTCGC
TGCGACTTCAGAGGCCGGTAGCTTCAACAGTCGGCGAGAGCGCCAGTCAG
TCGGTTGCAAGCTTTCTAGACCAT

BO12023.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 15:31:31
Subject Length Description Subject Range Query Range Score Percent Strand
CG13377-RB 993 CG13377-PB 1..990 17..1006 4950 100 Plus
CG13377-RA 993 CG13377-PA 1..990 17..1006 4950 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:31:32
Subject Length Description Subject Range Query Range Score Percent Strand
CG13377-RB 1411 CG13377-RB 149..1138 17..1006 4950 100 Plus
CG13377-RA 1601 CG13377-RA 339..1328 17..1006 4950 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 15:31:30
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 258893..259661 785..17 3845 100 Minus
X 23542271 X 258608..258828 1006..786 1105 100 Minus
Blast to na_te.dros performed on 2014-11-27 15:31:30 has no hits.

BO12023.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:09:39 Download gff for BO12023.complete
Subject Subject Range Query Range Percent Splice Strand
CG13377-RA 1..993 17..1010 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:26:53 Download gff for BO12023.complete
Subject Subject Range Query Range Percent Splice Strand
CG13377-RA 334..1336 8..1015 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:50:50 Download gff for BO12023.complete
Subject Subject Range Query Range Percent Splice Strand
CG13377-RA 339..1328 17..1008 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:09:39 Download gff for BO12023.complete
Subject Subject Range Query Range Percent Splice Strand
CG13377-RA 334..1336 8..1015 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:09:59 Download gff for BO12023.complete
Subject Subject Range Query Range Percent Splice Strand
CG13377-RA 339..1328 17..1008 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 16:09:59 Download gff for BO12023.complete
Subject Subject Range Query Range Percent Splice Strand
X 258606..258828 786..1008 99 <- Minus
X 258893..259661 17..785 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:50:50 Download gff for BO12023.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 152639..152861 786..1008 99 <- Minus
arm_X 152926..153694 17..785 100   Minus

BO12023.pep Sequence

Translation from 16 to 1024

> BO12023.pep
MEAMTMLVLGFQLLALFSIAGALLIYLICKVREDSASANADSHPSRVVLI
TSADTALGLQLCTHLANKGYRVFAGMKEAQDSLPAKLLCGWMKIREYSEE
PIAGTIIPMRLDVTREDVLREATVIIGANLNADERGIAAVINTSGSVFRG
QVESQNVQQWEHMLRTNILGTLRVAKAFVCFLRPTRGRLLYLGGVSGGGN
ARNEGDGLVAFNASRVAVDKCAEELRKELHPYGVSVVALDTCGMTAESLY
KAPVAQTMSLVVGAPTQYTADVLSPDALHVIERALWDYVPQQRYALLSHN
KYQFALPCRSSLRLQRPVASTVGESASQSVASFLDH

BO12023.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 23:43:44
Subject Length Description Subject Range Query Range Score Percent Strand
CG13377-PB 330 CG13377-PB 1..330 1..330 1668 100 Plus
CG13377-PA 330 CG13377-PA 1..330 1..330 1668 100 Plus
CG31549-PB 257 CG31549-PB 3..194 42..251 161 25.2 Plus
CG31549-PA 257 CG31549-PA 3..194 42..251 161 25.2 Plus
CG8888-PA 388 CG8888-PA 69..273 11..236 155 28.4 Plus