Clone Sequence Records
BO12023.3prime Sequence
845 bp (812 high quality bases) assembled on 2006-04-20
> BO12023.3prime
ATGGTCTAGAAAGCTTGCAACCGACTGACTGGCGCTCTCGCCGACTGTTG
AAGCTACCGGCCTCTGAAGTCGCAGCGAGGAGCGACATGGCAACGCAAAT
TGGTATTTGTTATGACTTAGAAGCGCATATCGCTGCTGCGGAACATAGTC
CCACAACGCCCGCTCGATCACATGAAGAGCGTCCGGACTGAGCACGTCCG
CTGTATACTGCGTAGGAGCCCCAACGACCAAGGACATGGTTTGTGCCACT
GGTGCCTTGTACAATGACTCCGCCGTCATGCCGCATGTATCCAAAGCGAC
CACACTGACGCCATAGGGATGCAGCTCCTTGCGCAGCTCTTCGGCACACT
TGTCTACGGCAACGCGTGAGGCGTTAAAGGCAACCAGTCCATCACCTTCG
TTTCGAGCATTTCCACCTCCACTTACTCCTCCCAAGTAAAGGAGTCTTCC
ACGTGTCGGACGGAGAAAACACACAAAGGCCTTGGCCACACGTAAGGTGC
CCAGGATGTTGGTTCTGAGCATGTGTTCCCACTGCTGGACATTCTGCGAT
TCAACCTGGCCTCGGAAAACACTGCCACTAGTGTTAATTACGGCCGCAAT
ACCGCGCTCATCTGCATTTAGATTAGCGCCTATAATAACGGTGGCCTCGC
GAAGCACATCCTCTCGGGTGACATCCAATCTCATCGGAATAATTGTGCCT
GCAATGGGTTCCTCACTGTACTCTCGGATCTTCATCCAACCGCAAAGAAG
TTTGGCGGGTAGCGAATCTTGGGCCTCTTTCATTCCAGCAAAAACCCGAT
AACCCTTGTTAGCCAAATGGGTGCACAATTGAAGACCCAATGCCG
BO12023.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:35:29
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG13377-PA | 993 | CG13377-RA | 166..990 | 843..19 | 4125 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 16:27:59
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG13377-RB | 1411 | CG13377-RB | 314..1138 | 843..19 | 4125 | 100 | Minus |
CG13377-RA | 1601 | CG13377-RA | 504..1328 | 843..19 | 4125 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 16:27:51
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 258893..259496 | 240..843 | 3020 | 100 | Plus |
X | 23542271 | X | 258608..258828 | 19..239 | 1105 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-10 16:27:55 has no hits.
BO12023.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:23:41 Download gff for
BO12023.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13377-PA | 164..993 | 15..845 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 04:54:18 Download gff for
BO12023.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13377-PA | 164..993 | 15..845 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-20 02:29:03 Download gff for
BO12023.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13377-RA | 502..1336 | 10..845 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:49:03 Download gff for
BO12023.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13377-RA | 502..1336 | 10..845 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:49:03 Download gff for
BO12023.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 258600..258828 | 10..239 | 98 | <- | Plus |
X | 258893..259497 | 240..845 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-20 02:29:03 Download gff for
BO12023.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 152633..152861 | 10..239 | 98 | <- | Plus |
arm_X | 152926..153530 | 240..845 | 99 | | Plus |
BO12023.5prime Sequence
865 bp (813 high quality bases) assembled on 2006-04-18
> BO12023.5prime
GAAGTTATCAGTCGACATGGAGGCAATGACCATGCTGGTGTTGGGCTTCC
AGTTGCTTGCGCTTTTTTCGATCGCCGGCGCGCTGCTTATCTACCTGATT
TGTAAGGTGCGCGAGGATAGCGCATCTGCCAATGCGGATAGTCATCCCAG
TCGGGTGGTCCTGATAACCAGTGCGGATACCGCATTGGGTCTTCAATTGT
GCACCCATTTGGCTAACAAGGGTTATCGGGTTTTTGCTGGAATGAAAGAG
GCCCAAGATTCGCTACCCGCCAAACTTCTTTGCGGTTGGATGAAGATCCG
AGAGTACAGTGAGGAACCCATTGCAGGCACAATTATTCCGATGAGATTGG
ATGTCACCCGAGAGGATGTGCTTCGCGAGGCCACCGTTATTATAGGCGCT
AATCTAAATGCAGATGAGCGCGGTATTGCGGCCGTAATTAACACTAGTGG
CAGTGTTTTCCGAGGCCAGGTTGAATCGCAGAATGTCCAGCAGTGGGAAC
ACATGCTCAGAACCAACATCCTGGGCACCTTACGTGTGGCCAAGGCCTTT
GTGTGTTTTCTCCGTCCGACACGTGGAAGACTCCTTTACTTGGGAGGAGT
AAGTGGAGGTGGAAATGCTCGAAACGAAGGTGATGGACTGGTTGCCTTTA
ACGCCTCACGCGTTGCCGTAGACAAGTGTGCCAAAGAGCTGCGCAAGGAG
CTGCATCCCTATGGCGTCAGTGTGGTCGCTTTGGATACATGCGGCATGAC
GGCGGAGTCATTGTACAAGGCACCAGTGGCACAAACCATGTCCTTGGTCG
TTGGGGCTCCTACGCAGTATACAGCGGACGTGCTCCGTCCGGACGCTCTT
CATGTGATCGAACGG
BO12023.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:35:29
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG13377-PA | 993 | CG13377-RA | 1..845 | 17..861 | 4175 | 99.7 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 20:58:35
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG13377-RB | 1411 | CG13377-RB | 149..997 | 17..865 | 4200 | 99.6 | Plus |
CG13377-RA | 1601 | CG13377-RA | 339..1187 | 17..865 | 4200 | 99.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 20:58:31
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 258893..259661 | 785..17 | 3830 | 99.9 | Minus |
X | 23542271 | X | 258749..258828 | 865..786 | 370 | 97.5 | Minus |
Blast to na_te.dros performed on 2015-02-10 20:58:33 has no hits.
BO12023.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:23:42 Download gff for
BO12023.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13377-PA | 1..849 | 17..865 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 04:54:18 Download gff for
BO12023.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13377-PA | 1..849 | 17..865 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 04:03:59 Download gff for
BO12023.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13377-RA | 334..1187 | 8..865 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:37:20 Download gff for
BO12023.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13377-RA | 334..1187 | 8..865 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:37:20 Download gff for
BO12023.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 258749..258828 | 786..865 | 97 | <- | Minus |
X | 258893..259666 | 8..785 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 04:03:59 Download gff for
BO12023.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 152782..152861 | 786..865 | 97 | <- | Minus |
arm_X | 152926..153699 | 8..785 | 99 | | Minus |
BO12023.complete Sequence
1024 bp assembled on 2006-10-11
GenBank Submission: FJ632282
> BO12023.complete
GAAGTTATCAGTCGACATGGAGGCAATGACCATGCTGGTGTTGGGCTTCC
AGTTGCTTGCGCTTTTTTCGATCGCCGGCGCGCTGCTTATCTACCTGATT
TGTAAGGTGCGCGAGGATAGCGCATCTGCCAATGCGGATAGTCATCCCAG
TCGGGTGGTCCTGATAACCAGTGCGGATACCGCATTGGGTCTTCAATTGT
GCACCCATTTGGCTAACAAGGGTTATCGGGTTTTTGCTGGAATGAAAGAG
GCCCAAGATTCGCTACCCGCCAAACTTCTTTGCGGTTGGATGAAGATCCG
AGAGTACAGTGAGGAACCCATTGCAGGCACAATTATTCCGATGAGATTGG
ATGTCACCCGAGAGGATGTGCTTCGCGAGGCCACCGTTATTATAGGCGCT
AATCTAAATGCAGATGAGCGCGGTATTGCGGCCGTAATTAACACTAGTGG
CAGTGTTTTCCGAGGCCAGGTTGAATCGCAGAATGTCCAGCAGTGGGAAC
ACATGCTCAGAACCAACATCCTGGGCACCTTACGTGTGGCCAAGGCCTTT
GTGTGTTTTCTCCGTCCGACACGTGGAAGACTCCTTTACTTGGGAGGAGT
AAGTGGAGGTGGAAATGCTCGAAACGAAGGTGATGGACTGGTTGCCTTTA
ACGCCTCACGCGTTGCCGTAGACAAGTGTGCCGAAGAGCTGCGCAAGGAG
CTGCATCCCTATGGCGTCAGTGTGGTCGCTTTGGATACATGCGGCATGAC
GGCGGAGTCATTGTACAAGGCACCAGTGGCACAAACCATGTCCTTGGTCG
TTGGGGCTCCTACGCAGTATACAGCGGACGTGCTCAGTCCGGACGCTCTT
CATGTGATCGAGCGGGCGTTGTGGGACTATGTTCCGCAGCAGCGATATGC
GCTTCTAAGTCATAACAAATACCAATTTGCGTTGCCATGTCGCTCCTCGC
TGCGACTTCAGAGGCCGGTAGCTTCAACAGTCGGCGAGAGCGCCAGTCAG
TCGGTTGCAAGCTTTCTAGACCAT
BO12023.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 15:31:31
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG13377-RB | 993 | CG13377-PB | 1..990 | 17..1006 | 4950 | 100 | Plus |
CG13377-RA | 993 | CG13377-PA | 1..990 | 17..1006 | 4950 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:31:32
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG13377-RB | 1411 | CG13377-RB | 149..1138 | 17..1006 | 4950 | 100 | Plus |
CG13377-RA | 1601 | CG13377-RA | 339..1328 | 17..1006 | 4950 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 15:31:30
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 258893..259661 | 785..17 | 3845 | 100 | Minus |
X | 23542271 | X | 258608..258828 | 1006..786 | 1105 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 15:31:30 has no hits.
BO12023.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:09:39 Download gff for
BO12023.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13377-RA | 1..993 | 17..1010 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:26:53 Download gff for
BO12023.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13377-RA | 334..1336 | 8..1015 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:50:50 Download gff for
BO12023.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13377-RA | 339..1328 | 17..1008 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:09:39 Download gff for
BO12023.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13377-RA | 334..1336 | 8..1015 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:09:59 Download gff for
BO12023.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13377-RA | 339..1328 | 17..1008 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 16:09:59 Download gff for
BO12023.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 258606..258828 | 786..1008 | 99 | <- | Minus |
X | 258893..259661 | 17..785 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:50:50 Download gff for
BO12023.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 152639..152861 | 786..1008 | 99 | <- | Minus |
arm_X | 152926..153694 | 17..785 | 100 | | Minus |
BO12023.pep Sequence
Translation from 16 to 1024
> BO12023.pep
MEAMTMLVLGFQLLALFSIAGALLIYLICKVREDSASANADSHPSRVVLI
TSADTALGLQLCTHLANKGYRVFAGMKEAQDSLPAKLLCGWMKIREYSEE
PIAGTIIPMRLDVTREDVLREATVIIGANLNADERGIAAVINTSGSVFRG
QVESQNVQQWEHMLRTNILGTLRVAKAFVCFLRPTRGRLLYLGGVSGGGN
ARNEGDGLVAFNASRVAVDKCAEELRKELHPYGVSVVALDTCGMTAESLY
KAPVAQTMSLVVGAPTQYTADVLSPDALHVIERALWDYVPQQRYALLSHN
KYQFALPCRSSLRLQRPVASTVGESASQSVASFLDH
BO12023.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 23:43:44
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG13377-PB | 330 | CG13377-PB | 1..330 | 1..330 | 1668 | 100 | Plus |
CG13377-PA | 330 | CG13377-PA | 1..330 | 1..330 | 1668 | 100 | Plus |
CG31549-PB | 257 | CG31549-PB | 3..194 | 42..251 | 161 | 25.2 | Plus |
CG31549-PA | 257 | CG31549-PA | 3..194 | 42..251 | 161 | 25.2 | Plus |
CG8888-PA | 388 | CG8888-PA | 69..273 | 11..236 | 155 | 28.4 | Plus |