Clone BO12026 Report

Search the DGRC for BO12026

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:120
Well:26
Vector:pDNR-Dual
Associated Gene/TranscriptCG13318-RA
Protein status:BO12026.pep: validated full length
Sequenced Size:1249

Clone Sequence Records

BO12026.3prime Sequence

836 bp (805 high quality bases) assembled on 2006-04-18

> BO12026.3prime
ATGGTCTAGAAAGCTTGCTAACGTCAGCGTTGTTTGGATCCAGGGCAGAT
AGGTGCCCACATTGACATAGACACCCGGAACTCCTGCCTGGGCGCATCCA
ATGCCCCAGGCCACCAAACCCACCACGTACCATACACCATTGCTGGTGCA
GACAAGCGGAGATCCCCCATCCCCGGTGCAGGCATCCTTGCCAGCTTCTC
CGCCGGCACAAATGAAGCTGGTGGGACTGAGGACGAAGGAGGAGCCCAGT
CGGGTTGCCTGCAGCGCCGCCTGGCAATTGGCATTGGGAATCAGGGGCAC
ATCCACTTGCCTCTCAATGGCCTGGTACGCTCCGGTGGCACCGAAGTCAT
TCTTGCCCCACCCAGCTACCCAGCATCTCTGACCCACGAAACTGGTGGTG
GGCAGACAGACAGTGCCCACAGTGGATTTGCTGGTCAGCGAAACGGGTGT
GGACAACTTCAGGATGGCCACATCGTTCTGCAGATTGTTGGGATTGAAGG
ACGGATTGACGTACACATTCGAGATGTACACATCCTGGGCGGGAATCGGT
TCGCTCGTACTGGCAGCATCCCATTCCCCCAGACGAACCTTAAAGTAAGT
GAGCCCCAGATTGTAAACTTTGTGGGCGGCGGTCAGAACATGTTGTGCGG
TGATCAGTGCTCCGCCACCCAGATAAACATCCGCGGTGGTAAGCAGTGCC
GCCTGCCAAGGATATGCTCCAAAACTGGCCTGTCCAGGCGCAGCGGTGGT
GGATCCCGGTGGAGGCGGGAACCTCCGACCACACTGATAGCTTCCCGCCT
GGCAGCAGGCCACCAGACCATAGCTACATGTCAGAG

BO12026.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:35:32
Subject Length Description Subject Range Query Range Score Percent Strand
CG13318-PA 1218 CG13318-RA 398..1215 836..19 4090 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-09 04:36:27
Subject Length Description Subject Range Query Range Score Percent Strand
CG13318-RA 1271 CG13318-RA 417..1234 836..19 4090 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-09 04:36:20
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 8771283..8771869 19..605 2935 100 Plus
3R 32079331 3R 8771927..8772159 604..836 1165 100 Plus
Blast to na_te.dros performed on 2015-02-09 04:36:24 has no hits.

BO12026.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:23:46 Download gff for BO12026.3prime
Subject Subject Range Query Range Percent Splice Strand
CG13318-PA 398..1218 18..836 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 04:54:25 Download gff for BO12026.3prime
Subject Subject Range Query Range Percent Splice Strand
CG13318-PA 398..1218 18..836 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-12 08:05:56 Download gff for BO12026.3prime
Subject Subject Range Query Range Percent Splice Strand
CG13318-RA 417..1234 19..836 100   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-09 05:34:32 Download gff for BO12026.3prime
Subject Subject Range Query Range Percent Splice Strand
CG13318-RA 417..1234 19..836 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-09 05:34:32 Download gff for BO12026.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 8771283..8771868 19..604 100 <- Plus
3R 8771928..8772159 605..836 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-12 08:05:56 Download gff for BO12026.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 4597005..4597590 19..604 100 <- Plus
arm_3R 4597650..4597881 605..836 100   Plus

BO12026.5prime Sequence

656 bp (645 high quality bases) assembled on 2006-04-18

> BO12026.5prime
GAAGTTATCAGTCGACATGACTCAGTTTGGTCGCATGTGGTGGGTGCCAC
TGCTGCAGTGGCTTAACATCGGATCAGGATTAGGTGTGGGTGCCTGGAGC
TTTGGACCAGTTCAATCGGATGCCAGCCAGGATACAAATCGAGTGCCGCA
ACCCAGCGATGTGGGCAGCACTGCGAATCACACAATACTCGCCCGGCAGC
TGATTGTGGGCACCCTGCTGCCACCGCAGGTTGCGCCGGGCACCTGGCCA
CCTGTGCCCTCCATCGTGAGTCCCGGAACCAGCTACTGCCAGTGCGTTCC
GCCCGGATCATGCGCCAATCCTCTGCCCACCGCACCCAGCGATGGCAGTG
GCCAGATTGACATCAGGATTGTCAACAATGGAGGATATCCCACTGTTCCA
ACCACATCTTCCACTCTGACATGTAGCTATGGTCTGGTGGCCTGCTGCCA
GGCGGGAAGCTATCAGTGTGGTCGGAGGTTCCCGCCTCCACCGGGATCCA
CCACCGCTGCGCCTGGACAGGCCAGTTTTGGAGCATATCCTTGGCAGGCG
GCACTGCTTACCACCGCGGATGTTTATCTGGGTGGCGGAGCACTGATCAC
CGCACAACATGTTCTGACCGCCGCCCACAAAGTTTACAATCTGGGGCTCA
CTTACT

BO12026.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:35:33
Subject Length Description Subject Range Query Range Score Percent Strand
CG13318-PA 1218 CG13318-RA 1..640 17..656 3200 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 20:08:22
Subject Length Description Subject Range Query Range Score Percent Strand
CG13318-RA 1271 CG13318-RA 20..659 17..656 3200 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 20:08:21
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 8771927..8772184 646..389 1290 100 Minus
3R 32079331 3R 8772248..8772450 388..186 1015 100 Minus
3R 32079331 3R 8772504..8772672 185..17 845 100 Minus
Blast to na_te.dros performed on 2015-02-12 20:08:22 has no hits.

BO12026.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:23:47 Download gff for BO12026.5prime
Subject Subject Range Query Range Percent Splice Strand
CG13318-PA 1..640 17..656 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 04:54:27 Download gff for BO12026.5prime
Subject Subject Range Query Range Percent Splice Strand
CG13318-PA 1..640 17..656 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 11:56:09 Download gff for BO12026.5prime
Subject Subject Range Query Range Percent Splice Strand
CG13318-RA 11..659 8..656 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 01:45:47 Download gff for BO12026.5prime
Subject Subject Range Query Range Percent Splice Strand
CG13318-RA 11..659 8..656 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 01:45:47 Download gff for BO12026.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 8771927..8772184 389..646 100 <- Minus
3R 8772248..8772450 186..388 100 <- Minus
3R 8772504..8772681 8..185 97   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 11:56:09 Download gff for BO12026.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 4597649..4597906 389..646 100 <- Minus
arm_3R 4597970..4598172 186..388 100 <- Minus
arm_3R 4598226..4598403 8..185 97   Minus

BO12026.complete Sequence

1249 bp assembled on 2006-10-11

GenBank Submission: FJ632285

> BO12026.complete
GAAGTTATCAGTCGACATGACTCAGTTTGGTCGCATGTGGTGGGTGCCAC
TGCTGCAGTGGCTTAACATCGGATCAGGATTAGGTGTGGGTGCCTGGAGC
TTTGGACCAGTTCAATCGGATGCCAGCCAGGATACAAATCGAGTGCCGCA
ACCCAGCGATGTGGGCAGCACTGCGAATCACACAATACTCGCCCGGCAGC
TGATTGTGGGCACCCTGCTGCCACCGCAGGTTGCGCCGGGCACCTGGCCA
CCTGTGCCCTCCATCGTGAGTCCCGGAACCAGCTACTGCCAGTGCGTTCC
GCCCGGATCATGCGCCAATCCTCTGCCCACCGCACCCAGCGATGGCAGTG
GCCAGATTGACATCAGGATTGTCAACAATGGAGGATATCCCACTGTTCCA
ACCACATCTTCCACTCTGACATGTAGCTATGGTCTGGTGGCCTGCTGCCA
GGCGGGAAGCTATCAGTGTGGTCGGAGGTTCCCGCCTCCACCGGGATCCA
CCACCGCTGCGCCTGGACAGGCCAGTTTTGGAGCATATCCTTGGCAGGCG
GCACTGCTTACCACCGCGGATGTTTATCTGGGTGGCGGAGCACTGATCAC
CGCACAACATGTTCTGACCGCCGCCCACAAAGTTTACAATCTGGGGCTCA
CTTACTTTAAGGTTCGTCTGGGGGAATGGGATGCTGCCAGTACGAGCGAA
CCGATTCCCGCCCAGGATGTGTACATCTCGAATGTGTACGTCAATCCGTC
CTTCAATCCCAACAATCTGCAGAACGATGTGGCCATCCTGAAGTTGTCCA
CACCCGTTTCGCTGACCAGCAAATCCACTGTGGGCACTGTCTGTCTGCCC
ACCACCAGTTTCGTGGGTCAGAGATGCTGGGTAGCTGGGTGGGGCAAGAA
TGACTTCGGTGCCACCGGAGCGTACCAGGCCATTGAGAGGCAAGTGGATG
TGCCCCTGATTCCCAATGCCAATTGCCAGGCGGCGCTGCAGGCAACCCGA
CTGGGCTCCTCCTTCGTCCTCAGTCCCACCAGCTTCATTTGTGCCGGCGG
AGAAGCTGGCAAGGATGCCTGCACCGGGGATGGGGGATCTCCGCTTGTCT
GCACCAGCAATGGTGTATGGTACGTGGTGGGTTTGGTGGCCTGGGGCATT
GGATGCGCCCAGGCAGGAGTTCCGGGTGTCTATGTCAATGTGGGCACCTA
TCTGCCCTGGATCCAAACAACGCTGACGTTAGCAAGCTTTCTAGACCAT

BO12026.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 00:10:34
Subject Length Description Subject Range Query Range Score Percent Strand
CG13318-RA 1218 CG13318-PA 1..1215 17..1231 6075 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 00:10:35
Subject Length Description Subject Range Query Range Score Percent Strand
CG13318-RA 1271 CG13318-RA 20..1234 17..1231 6075 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 00:10:31
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 8771283..8771869 1231..645 2935 100 Minus
3R 32079331 3R 8771927..8772184 646..389 1290 100 Minus
3R 32079331 3R 8772248..8772450 388..186 1015 100 Minus
3R 32079331 3R 8772504..8772672 185..17 845 100 Minus
Blast to na_te.dros performed on 2014-11-28 00:10:33 has no hits.

BO12026.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:10:49 Download gff for BO12026.complete
Subject Subject Range Query Range Percent Splice Strand
CG13318-RA 1..1218 17..1232 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:28:43 Download gff for BO12026.complete
Subject Subject Range Query Range Percent Splice Strand
CG13318-RA 6..1229 8..1231 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:46:54 Download gff for BO12026.complete
Subject Subject Range Query Range Percent Splice Strand
CG13318-RA 20..1234 17..1233 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:10:49 Download gff for BO12026.complete
Subject Subject Range Query Range Percent Splice Strand
CG13318-RA 6..1229 8..1231 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:15:45 Download gff for BO12026.complete
Subject Subject Range Query Range Percent Splice Strand
CG13318-RA 20..1234 17..1233 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:15:45 Download gff for BO12026.complete
Subject Subject Range Query Range Percent Splice Strand
3R 8772504..8772672 17..185 100   Minus
3R 8771281..8771868 646..1233 99 <- Minus
3R 8771928..8772184 389..645 100 <- Minus
3R 8772248..8772450 186..388 100 <- Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:46:54 Download gff for BO12026.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 4598226..4598394 17..185 100   Minus
arm_3R 4597003..4597590 646..1233 99 <- Minus
arm_3R 4597650..4597906 389..645 100 <- Minus
arm_3R 4597970..4598172 186..388 100 <- Minus

BO12026.pep Sequence

Translation from 16 to 1249

> BO12026.pep
MTQFGRMWWVPLLQWLNIGSGLGVGAWSFGPVQSDASQDTNRVPQPSDVG
STANHTILARQLIVGTLLPPQVAPGTWPPVPSIVSPGTSYCQCVPPGSCA
NPLPTAPSDGSGQIDIRIVNNGGYPTVPTTSSTLTCSYGLVACCQAGSYQ
CGRRFPPPPGSTTAAPGQASFGAYPWQAALLTTADVYLGGGALITAQHVL
TAAHKVYNLGLTYFKVRLGEWDAASTSEPIPAQDVYISNVYVNPSFNPNN
LQNDVAILKLSTPVSLTSKSTVGTVCLPTTSFVGQRCWVAGWGKNDFGAT
GAYQAIERQVDVPLIPNANCQAALQATRLGSSFVLSPTSFICAGGEAGKD
ACTGDGGSPLVCTSNGVWYVVGLVAWGIGCAQAGVPGVYVNVGTYLPWIQ
TTLTLASFLDH

BO12026.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 00:37:17
Subject Length Description Subject Range Query Range Score Percent Strand
CG13318-PA 405 CG13318-PA 1..405 1..405 2191 100 Plus
CG4998-PA 891 CG4998-PA 647..884 167..400 615 48.1 Plus
CG4998-PB 1185 CG4998-PB 941..1178 167..400 615 48.1 Plus
CG5390-PB 406 CG5390-PB 76..398 92..407 559 39.1 Plus
CG5390-PA 406 CG5390-PA 76..398 92..407 559 39.1 Plus