Clone Sequence Records
BO12026.3prime Sequence
836 bp (805 high quality bases) assembled on 2006-04-18
> BO12026.3prime
ATGGTCTAGAAAGCTTGCTAACGTCAGCGTTGTTTGGATCCAGGGCAGAT
AGGTGCCCACATTGACATAGACACCCGGAACTCCTGCCTGGGCGCATCCA
ATGCCCCAGGCCACCAAACCCACCACGTACCATACACCATTGCTGGTGCA
GACAAGCGGAGATCCCCCATCCCCGGTGCAGGCATCCTTGCCAGCTTCTC
CGCCGGCACAAATGAAGCTGGTGGGACTGAGGACGAAGGAGGAGCCCAGT
CGGGTTGCCTGCAGCGCCGCCTGGCAATTGGCATTGGGAATCAGGGGCAC
ATCCACTTGCCTCTCAATGGCCTGGTACGCTCCGGTGGCACCGAAGTCAT
TCTTGCCCCACCCAGCTACCCAGCATCTCTGACCCACGAAACTGGTGGTG
GGCAGACAGACAGTGCCCACAGTGGATTTGCTGGTCAGCGAAACGGGTGT
GGACAACTTCAGGATGGCCACATCGTTCTGCAGATTGTTGGGATTGAAGG
ACGGATTGACGTACACATTCGAGATGTACACATCCTGGGCGGGAATCGGT
TCGCTCGTACTGGCAGCATCCCATTCCCCCAGACGAACCTTAAAGTAAGT
GAGCCCCAGATTGTAAACTTTGTGGGCGGCGGTCAGAACATGTTGTGCGG
TGATCAGTGCTCCGCCACCCAGATAAACATCCGCGGTGGTAAGCAGTGCC
GCCTGCCAAGGATATGCTCCAAAACTGGCCTGTCCAGGCGCAGCGGTGGT
GGATCCCGGTGGAGGCGGGAACCTCCGACCACACTGATAGCTTCCCGCCT
GGCAGCAGGCCACCAGACCATAGCTACATGTCAGAG
BO12026.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:35:32
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG13318-PA | 1218 | CG13318-RA | 398..1215 | 836..19 | 4090 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-09 04:36:27
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG13318-RA | 1271 | CG13318-RA | 417..1234 | 836..19 | 4090 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-09 04:36:20
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 8771283..8771869 | 19..605 | 2935 | 100 | Plus |
3R | 32079331 | 3R | 8771927..8772159 | 604..836 | 1165 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-09 04:36:24 has no hits.
BO12026.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:23:46 Download gff for
BO12026.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13318-PA | 398..1218 | 18..836 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 04:54:25 Download gff for
BO12026.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13318-PA | 398..1218 | 18..836 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-12 08:05:56 Download gff for
BO12026.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13318-RA | 417..1234 | 19..836 | 100 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-09 05:34:32 Download gff for
BO12026.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13318-RA | 417..1234 | 19..836 | 100 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-09 05:34:32 Download gff for
BO12026.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 8771283..8771868 | 19..604 | 100 | <- | Plus |
3R | 8771928..8772159 | 605..836 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-12 08:05:56 Download gff for
BO12026.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 4597005..4597590 | 19..604 | 100 | <- | Plus |
arm_3R | 4597650..4597881 | 605..836 | 100 | | Plus |
BO12026.5prime Sequence
656 bp (645 high quality bases) assembled on 2006-04-18
> BO12026.5prime
GAAGTTATCAGTCGACATGACTCAGTTTGGTCGCATGTGGTGGGTGCCAC
TGCTGCAGTGGCTTAACATCGGATCAGGATTAGGTGTGGGTGCCTGGAGC
TTTGGACCAGTTCAATCGGATGCCAGCCAGGATACAAATCGAGTGCCGCA
ACCCAGCGATGTGGGCAGCACTGCGAATCACACAATACTCGCCCGGCAGC
TGATTGTGGGCACCCTGCTGCCACCGCAGGTTGCGCCGGGCACCTGGCCA
CCTGTGCCCTCCATCGTGAGTCCCGGAACCAGCTACTGCCAGTGCGTTCC
GCCCGGATCATGCGCCAATCCTCTGCCCACCGCACCCAGCGATGGCAGTG
GCCAGATTGACATCAGGATTGTCAACAATGGAGGATATCCCACTGTTCCA
ACCACATCTTCCACTCTGACATGTAGCTATGGTCTGGTGGCCTGCTGCCA
GGCGGGAAGCTATCAGTGTGGTCGGAGGTTCCCGCCTCCACCGGGATCCA
CCACCGCTGCGCCTGGACAGGCCAGTTTTGGAGCATATCCTTGGCAGGCG
GCACTGCTTACCACCGCGGATGTTTATCTGGGTGGCGGAGCACTGATCAC
CGCACAACATGTTCTGACCGCCGCCCACAAAGTTTACAATCTGGGGCTCA
CTTACT
BO12026.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:35:33
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG13318-PA | 1218 | CG13318-RA | 1..640 | 17..656 | 3200 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 20:08:22
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG13318-RA | 1271 | CG13318-RA | 20..659 | 17..656 | 3200 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 20:08:21
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 8771927..8772184 | 646..389 | 1290 | 100 | Minus |
3R | 32079331 | 3R | 8772248..8772450 | 388..186 | 1015 | 100 | Minus |
3R | 32079331 | 3R | 8772504..8772672 | 185..17 | 845 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-12 20:08:22 has no hits.
BO12026.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:23:47 Download gff for
BO12026.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13318-PA | 1..640 | 17..656 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 04:54:27 Download gff for
BO12026.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13318-PA | 1..640 | 17..656 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 11:56:09 Download gff for
BO12026.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13318-RA | 11..659 | 8..656 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 01:45:47 Download gff for
BO12026.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13318-RA | 11..659 | 8..656 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 01:45:47 Download gff for
BO12026.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 8771927..8772184 | 389..646 | 100 | <- | Minus |
3R | 8772248..8772450 | 186..388 | 100 | <- | Minus |
3R | 8772504..8772681 | 8..185 | 97 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 11:56:09 Download gff for
BO12026.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 4597649..4597906 | 389..646 | 100 | <- | Minus |
arm_3R | 4597970..4598172 | 186..388 | 100 | <- | Minus |
arm_3R | 4598226..4598403 | 8..185 | 97 | | Minus |
BO12026.complete Sequence
1249 bp assembled on 2006-10-11
GenBank Submission: FJ632285
> BO12026.complete
GAAGTTATCAGTCGACATGACTCAGTTTGGTCGCATGTGGTGGGTGCCAC
TGCTGCAGTGGCTTAACATCGGATCAGGATTAGGTGTGGGTGCCTGGAGC
TTTGGACCAGTTCAATCGGATGCCAGCCAGGATACAAATCGAGTGCCGCA
ACCCAGCGATGTGGGCAGCACTGCGAATCACACAATACTCGCCCGGCAGC
TGATTGTGGGCACCCTGCTGCCACCGCAGGTTGCGCCGGGCACCTGGCCA
CCTGTGCCCTCCATCGTGAGTCCCGGAACCAGCTACTGCCAGTGCGTTCC
GCCCGGATCATGCGCCAATCCTCTGCCCACCGCACCCAGCGATGGCAGTG
GCCAGATTGACATCAGGATTGTCAACAATGGAGGATATCCCACTGTTCCA
ACCACATCTTCCACTCTGACATGTAGCTATGGTCTGGTGGCCTGCTGCCA
GGCGGGAAGCTATCAGTGTGGTCGGAGGTTCCCGCCTCCACCGGGATCCA
CCACCGCTGCGCCTGGACAGGCCAGTTTTGGAGCATATCCTTGGCAGGCG
GCACTGCTTACCACCGCGGATGTTTATCTGGGTGGCGGAGCACTGATCAC
CGCACAACATGTTCTGACCGCCGCCCACAAAGTTTACAATCTGGGGCTCA
CTTACTTTAAGGTTCGTCTGGGGGAATGGGATGCTGCCAGTACGAGCGAA
CCGATTCCCGCCCAGGATGTGTACATCTCGAATGTGTACGTCAATCCGTC
CTTCAATCCCAACAATCTGCAGAACGATGTGGCCATCCTGAAGTTGTCCA
CACCCGTTTCGCTGACCAGCAAATCCACTGTGGGCACTGTCTGTCTGCCC
ACCACCAGTTTCGTGGGTCAGAGATGCTGGGTAGCTGGGTGGGGCAAGAA
TGACTTCGGTGCCACCGGAGCGTACCAGGCCATTGAGAGGCAAGTGGATG
TGCCCCTGATTCCCAATGCCAATTGCCAGGCGGCGCTGCAGGCAACCCGA
CTGGGCTCCTCCTTCGTCCTCAGTCCCACCAGCTTCATTTGTGCCGGCGG
AGAAGCTGGCAAGGATGCCTGCACCGGGGATGGGGGATCTCCGCTTGTCT
GCACCAGCAATGGTGTATGGTACGTGGTGGGTTTGGTGGCCTGGGGCATT
GGATGCGCCCAGGCAGGAGTTCCGGGTGTCTATGTCAATGTGGGCACCTA
TCTGCCCTGGATCCAAACAACGCTGACGTTAGCAAGCTTTCTAGACCAT
BO12026.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 00:10:34
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG13318-RA | 1218 | CG13318-PA | 1..1215 | 17..1231 | 6075 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 00:10:35
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG13318-RA | 1271 | CG13318-RA | 20..1234 | 17..1231 | 6075 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 00:10:31
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 8771283..8771869 | 1231..645 | 2935 | 100 | Minus |
3R | 32079331 | 3R | 8771927..8772184 | 646..389 | 1290 | 100 | Minus |
3R | 32079331 | 3R | 8772248..8772450 | 388..186 | 1015 | 100 | Minus |
3R | 32079331 | 3R | 8772504..8772672 | 185..17 | 845 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 00:10:33 has no hits.
BO12026.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:10:49 Download gff for
BO12026.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13318-RA | 1..1218 | 17..1232 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:28:43 Download gff for
BO12026.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13318-RA | 6..1229 | 8..1231 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:46:54 Download gff for
BO12026.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13318-RA | 20..1234 | 17..1233 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:10:49 Download gff for
BO12026.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13318-RA | 6..1229 | 8..1231 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:15:45 Download gff for
BO12026.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13318-RA | 20..1234 | 17..1233 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:15:45 Download gff for
BO12026.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 8772504..8772672 | 17..185 | 100 | | Minus |
3R | 8771281..8771868 | 646..1233 | 99 | <- | Minus |
3R | 8771928..8772184 | 389..645 | 100 | <- | Minus |
3R | 8772248..8772450 | 186..388 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:46:54 Download gff for
BO12026.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 4598226..4598394 | 17..185 | 100 | | Minus |
arm_3R | 4597003..4597590 | 646..1233 | 99 | <- | Minus |
arm_3R | 4597650..4597906 | 389..645 | 100 | <- | Minus |
arm_3R | 4597970..4598172 | 186..388 | 100 | <- | Minus |
BO12026.pep Sequence
Translation from 16 to 1249
> BO12026.pep
MTQFGRMWWVPLLQWLNIGSGLGVGAWSFGPVQSDASQDTNRVPQPSDVG
STANHTILARQLIVGTLLPPQVAPGTWPPVPSIVSPGTSYCQCVPPGSCA
NPLPTAPSDGSGQIDIRIVNNGGYPTVPTTSSTLTCSYGLVACCQAGSYQ
CGRRFPPPPGSTTAAPGQASFGAYPWQAALLTTADVYLGGGALITAQHVL
TAAHKVYNLGLTYFKVRLGEWDAASTSEPIPAQDVYISNVYVNPSFNPNN
LQNDVAILKLSTPVSLTSKSTVGTVCLPTTSFVGQRCWVAGWGKNDFGAT
GAYQAIERQVDVPLIPNANCQAALQATRLGSSFVLSPTSFICAGGEAGKD
ACTGDGGSPLVCTSNGVWYVVGLVAWGIGCAQAGVPGVYVNVGTYLPWIQ
TTLTLASFLDH
BO12026.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 00:37:17
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG13318-PA | 405 | CG13318-PA | 1..405 | 1..405 | 2191 | 100 | Plus |
CG4998-PA | 891 | CG4998-PA | 647..884 | 167..400 | 615 | 48.1 | Plus |
CG4998-PB | 1185 | CG4998-PB | 941..1178 | 167..400 | 615 | 48.1 | Plus |
CG5390-PB | 406 | CG5390-PB | 76..398 | 92..407 | 559 | 39.1 | Plus |
CG5390-PA | 406 | CG5390-PA | 76..398 | 92..407 | 559 | 39.1 | Plus |