Clone BO12028 Report

Search the DGRC for BO12028

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:120
Well:28
Vector:pDNR-Dual
Associated Gene/TranscriptCG32791-RA
Protein status:BO12028.pep:
Sequenced Size:1696

Clone Sequence Records

BO12028.3prime Sequence

813 bp (712 high quality bases) assembled on 2006-04-20

> BO12028.3prime
ATGGTCTAGAAAGCTTGCTAAGAGGCTGAGCAAAAGTCCGGGCAGGCAAG
CCTGCGACAAGCCCATTAAGAACGTATGTCGGCAGTGCCAACTCCTGACC
AGGATGAGCCGCGCGAATGGAAGGAGAAGAATGGGTAAGTGGTGACCTCG
ACACAATCGCGAGTCTCCGGAGCCTGAGCTCATTTCGTTGTTGTCAATGG
GGCCTCGCACTTCCGTATTGCCACCATAATATGGCGGTGGCTTGCGGGTG
ATGCCTCCCATTTCGCCACCAAGTGAACCCGCATCACCGCCAGTTGGGCC
ACCACCTGGCCCACCACTGTGTTGCTGGTTGTTGTTGTTGTTGTTGTGGT
GGTGATGATGGTGGTGCTGCTGATGTAGATGCTGATTGCCGCCGGAGTTG
CCCGGCTTATGTGTGGCCGGTTTATTGCCGCTGGTGTAGTAAACGTGCGG
CGATAACGGCGTCAGGCCCCCGCCCTCGCCGCCTTCCGCCTCGAAATCCT
CGACGGATCCGTACTGCAGCTCCTCGTCCTCCGGCTGATAAGTGACTTTG
ACTTGTTGTTTCTGCTTCAAAATGTCATTGGCATCCGCATCCAGGCTTCC
GCCCGCTCCACCTCCTTTTCCGCCGCCGTTCAGCGGATTTTTATTACGAT
TCGGTCCGGGGATTTCGTATAAACGGATACTGCTGTCGACTTCGCCGAGT
GAGTTTTTGGCAATGCAGCGATAGGATCCGACATCATCCTTTTGAAACTT
CCTGACTATCATTGACATTTTGGTCTCGTACATGGACTGCGAACTCTCCT
GCACATGATACTT

BO12028.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:35:35
Subject Length Description Subject Range Query Range Score Percent Strand
CG32791-PA 1665 CG32791-RA 868..1662 813..19 3950 99.8 Minus
CG5575-PA 1806 ken-RA 745..785 369..329 155 95.1 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 10:37:49
Subject Length Description Subject Range Query Range Score Percent Strand
CG32791-RC 7668 CG32791-RC 1113..1907 813..19 3960 99.9 Minus
CG32791-RB 4540 CG32791-RB 2077..2871 813..19 3960 99.9 Minus
CG32791-RA 3576 CG32791-RA 1113..1907 813..19 3960 99.9 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 10:37:45
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 3513006..3513653 19..666 3240 100 Plus
X 23542271 X 3514002..3514149 666..813 725 99.3 Plus
Blast to na_te.dros performed 2015-02-12 10:37:47
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2472..2550 400..322 169 71.2 Minus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2289..2362 395..320 167 74 Minus

BO12028.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:23:49 Download gff for BO12028.3prime
Subject Subject Range Query Range Percent Splice Strand
CG32791-PA 868..1665 15..813 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 04:54:32 Download gff for BO12028.3prime
Subject Subject Range Query Range Percent Splice Strand
CG32791-PA 868..1665 15..813 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 01:20:58 Download gff for BO12028.3prime
Subject Subject Range Query Range Percent Splice Strand
CG32791-RA 1113..1910 15..813 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 13:30:25 Download gff for BO12028.3prime
Subject Subject Range Query Range Percent Splice Strand
CG32791-RA 1113..1910 15..813 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 13:30:25 Download gff for BO12028.3prime
Subject Subject Range Query Range Percent Splice Strand
X 3513003..3513652 15..665 99 <- Plus
X 3514002..3514149 666..813 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 01:20:58 Download gff for BO12028.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 3407036..3407685 15..665 99 <- Plus
arm_X 3408035..3408182 666..813 99   Plus

BO12028.5prime Sequence

861 bp (727 high quality bases) assembled on 2006-04-18

> BO12028.5prime
GAAGTTATCAGTCGACATGCCAGTCTCGGCGAAACGCTTACTTCGGAATT
TTCAGTTCACCAGCTGCGATCGGAATGGCAAAATGTTGATTCACCTGCTG
CTCATCGTTTCGCTTCTGGAAGCAATTGGCGCCTTTCAGCCGGAGTTCGT
GGAGAGCATTTCCAACGTGTCCGTGGCCGTCGGACGCGATGCAACCTTCA
CGTGTCACGTCCGACACTTGGGCGGCTATCGGGTGGGCTGGCTCAAGGCC
GACACCAAGGCCATTCAAGCCATCCACGAGAACGTAATCACGCACAATCC
TCGCGTCACGGTCAGTCACTTGGACCAGAACACGTGGAATTTGCATATAA
AGGCGGTTTCCGAGGAGGATCGCGGCGGTTATATGTGCCAACTGAACACG
GATCCGATGAAGAGTCAGATTGGCTTCCTGGACGTCGTGATTCCGCCGGA
CTTCATCAGCGAGGACACCTCATCCGATGTGATTGTGCCGGAGGGCAGTT
CCGTGCGATTGACATGTCGGGCTCGCGGTTATCCGGAACCGATTGTCACC
TGGCGCCGCGAAGATGGCAACGAAATTGTCCTGAAGGACAATGTGGGCAC
TAAGACCCTAGCGCCCTCTTTTCGCGGCGAGGTGCTAAAGCTATCATAGA
TCTCGAGGAACGAGATGGGCTCCTATCTGTGCATCGCCTCCAACGGAGTA
CCGCCATCGGTCTCAAAGCGCATCTCCCTCAGCATACACTTTCATCCGGT
CATCCAAGTGCCGAATCAATTAATCGGCGCACCCCTTGGCACTGATGTCC
AAATCGAGTGTCACGTCGAAACCCCGCCCAAATCATTTAACTACTGGATT
AAGGACACGGG

BO12028.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:35:36
Subject Length Description Subject Range Query Range Score Percent Strand
CG32791-PA 1665 CG32791-RA 1..845 17..861 4075 99.2 Plus
CG4814-PA 648 CG4814-RA 397..443 665..711 135 91.4 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 05:27:06
Subject Length Description Subject Range Query Range Score Percent Strand
CG32791-RC 7668 CG32791-RC 246..1090 17..861 4135 99.3 Plus
CG32791-RA 3576 CG32791-RA 246..1090 17..861 4135 99.3 Plus
CG32791-RB 4540 CG32791-RB 1314..2054 121..861 3615 99.2 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 05:27:01
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 3523634..3523820 418..232 935 100 Minus
X 23542271 X 3519825..3519955 740..610 640 99.2 Minus
X 23542271 X 3523920..3524033 234..121 570 100 Minus
X 23542271 X 3514867..3514987 861..741 530 95.9 Minus
X 23542271 X 3530315..3530420 122..17 530 100 Minus
X 23542271 X 3522211..3522314 520..417 520 100 Minus
X 23542271 X 3520042..3520134 611..519 465 100 Minus
3L 28110227 3L 5433780..5433839 665..724 195 88.3 Plus
Blast to na_te.dros performed on 2015-02-12 05:27:04 has no hits.

BO12028.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:23:50 Download gff for BO12028.5prime
Subject Subject Range Query Range Percent Splice Strand
CG32791-PA 1..845 17..861 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 04:54:33 Download gff for BO12028.5prime
Subject Subject Range Query Range Percent Splice Strand
CG32791-PA 1..845 17..861 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 03:59:21 Download gff for BO12028.5prime
Subject Subject Range Query Range Percent Splice Strand
CG32791-RA 246..1090 17..861 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 07:27:22 Download gff for BO12028.5prime
Subject Subject Range Query Range Percent Splice Strand
CG32791-RA 246..1090 17..861 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 07:27:22 Download gff for BO12028.5prime
Subject Subject Range Query Range Percent Splice Strand
X 3514867..3514987 741..861 95 <- Minus
X 3519825..3519953 612..740 99 <- Minus
X 3520042..3520133 520..611 100 <- Minus
X 3522212..3522312 419..519 100 <- Minus
X 3523634..3523819 233..418 100 <- Minus
X 3523922..3524031 123..232 100 <- Minus
X 3530315..3530420 17..122 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 03:59:21 Download gff for BO12028.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 3408900..3409020 741..861 95 <- Minus
arm_X 3413858..3413986 612..740 99 <- Minus
arm_X 3414075..3414166 520..611 100 <- Minus
arm_X 3416245..3416345 419..519 100 <- Minus
arm_X 3417667..3417852 233..418 100 <- Minus
arm_X 3417955..3418064 123..232 100 <- Minus
arm_X 3424348..3424453 17..122 100   Minus

BO12028.complete Sequence

1696 bp assembled on 2008-01-17

GenBank Submission: FJ632286

> BO12028.complete
GAAGTTATCAGTCGACATGCCAGTCTCGGCGAAACGCTTACTTCGGAATT
TTCAGTTCACCAGCTGCGATCGGAATGGCAAAATGTTGATTCACCTGCTG
CTCATCGTTTCGCTTCTGGAAGCAATTGGCGCCTTTCAGCCGGAGTTCGT
GGAGAGCATTTCCAACGTGTCCGTGGCCGTCGGACGCGATGCAACCTTCA
CGTGTCACGTCCGACACTTGGGCGGCTATCGGGTGGGCTGGCTCAAGGCC
GACACCAAGGCCATTCAAGCCATCCACGAGAACGTAATCACGCACAATCC
TCGCGTCACGGTCAGTCACTTGGACCAGAACACGTGGAATTTGCATATAA
AGGCGGTTTCCGAGGAGGATCGCGGCGGTTATATGTGCCAACTGAACACG
GATCCGATGAAGAGTCAGATTGGCTTCCTGGACGTCGTGATTCCGCCGGA
CTTCATCAGCGAGGACACCTCATCCGATGTGATTGTGCCGGAGGGCAGTT
CCGTGCGATTGACATGTCGGGCTCGCGGTTATCCGGAACCGATTGTCACC
TGGCGCCGCGAAGATGGCAACGAAATTGTCCTGAAGGACAATGTGGGCAC
TAAGACCCTAGCGCCCTCTTTTCGCGGCGAGGTGCTAAAGCTATCAAAGA
TCTCGAGGAACGAGATGGGCTCCTATCTGTGCATCGCCTCCAACGGAGTA
CCGCCATCGGTCTCAAAGCGCATCTCCCTCAGCATACACTTTCATCCGGT
CATCCAAGTGCCGAATCAATTAGTCGGCGCACCACTTGGCACTGATGTCC
AAATCGAGTGTCACGTCGAAGCCTCGCCCAAATCAATTAACTACTGGATT
AAGGACACGGGTGAGATGATTGTGACATCGGGCAAGTATCATGTGCAGGA
GAGCTCGCAGTCCATGTACGAGACCAAAATGTCAATGATAGTCAGGAAGT
TTCAAAAGGATGATGTCGGATCCTATCGCTGCATTGCCAAAAACTCACTC
GGCGAAGTCGACAGCAGTATCCGTTTATACGAAATCCCCGGACCGAATCG
TAATAAAAATCCGCTGAACGGCGGCGGAAAAGGAGGTGGAGCGGGCGGAA
GCCTGGATGCGGATGCCAATGACATTTTGAAGCAGAAACAACAAGTCAAA
GTCACTTATCAGCCGGAGGACGAGGAGCTGCAGTACGGATCCGTCGAGGA
TTTCGAGGCGGAAGGCGGCGAGGGCGGGGGCCTGACGCCGTTATCGCCGC
ACGTTTACTACACCAGCGGCAATAAACCGGCCACACATAAGCCGGGCAAC
TCCGGCGGCAATCAGCATCTACATCAGCAGCACCACCATCATCACCACCA
CAACAACAACAACAACAACCAGCAACACAGTGGTGGGCCAGGTGGTGGCC
CAACTGGCGGTGATGCGGGTTCACTTGGTGGCGAAATGGGAGGCATCACC
CGCAAGCCACCGCCATATTATGGTGGCAATACGGAAGTGCGAGGCCCCAT
TGACAACAACGAAATGAGCTCAGGCTCCGGAGACTCGCGATTGTGTCGAG
GTCACCACTTACCCATTCTTCTCCTTCCATTCGCGCGGCTCATCCTGGTC
AGGAGTTGGCACTGCCGACATACGTTCTTAATGGGCTTGTCGCAGGCTTG
CCTGCCCGGACTTTTGCTCAGCCTCTTAGCAAGCTTTCTAGACCAT

BO12028.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 05:26:11
Subject Length Description Subject Range Query Range Score Percent Strand
CG32791-RC 1665 CG32791-PC 1..1662 17..1678 8310 100 Plus
CG32791-RA 1665 CG32791-PA 1..1662 17..1678 8310 100 Plus
CG32791-RB 1299 CG32791-PB 1..1296 383..1678 6480 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 05:26:12
Subject Length Description Subject Range Query Range Score Percent Strand
CG32791-RC 7668 CG32791-RC 246..1907 17..1678 8310 100 Plus
CG32791-RA 3576 CG32791-RA 246..1907 17..1678 8310 100 Plus
CG32791-RB 4540 CG32791-RB 1314..2871 121..1678 7790 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 05:26:08
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 3513006..3513653 1678..1031 3240 100 Minus
X 23542271 X 3523634..3523820 418..232 935 100 Minus
X 23542271 X 3514002..3514173 1031..860 860 100 Minus
X 23542271 X 3519825..3519955 740..610 655 100 Minus
X 23542271 X 3514866..3514987 862..741 610 100 Minus
X 23542271 X 3523920..3524033 234..121 570 100 Minus
X 23542271 X 3530315..3530420 122..17 530 100 Minus
X 23542271 X 3522211..3522314 520..417 520 100 Minus
X 23542271 X 3520042..3520134 611..519 465 100 Minus
3L 28110227 3L 5433780..5433839 665..724 195 88.3 Plus
Blast to na_te.dros performed on 2014-11-28 05:26:10 has no hits.

BO12028.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 13:59:41 Download gff for BO12028.complete
Subject Subject Range Query Range Percent Splice Strand
CG32791-RA 1..1665 17..1682 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-07-28 16:34:39 Download gff for BO12028.complete
Subject Subject Range Query Range Percent Splice Strand
CG32791-RA 243..1904 17..1680 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:10:54 Download gff for BO12028.complete
Subject Subject Range Query Range Percent Splice Strand
CG32791-RA 246..1907 17..1680 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 13:59:41 Download gff for BO12028.complete
Subject Subject Range Query Range Percent Splice Strand
CG32791-RA 243..1907 17..1682 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 06:11:12 Download gff for BO12028.complete
Subject Subject Range Query Range Percent Splice Strand
CG32791-RA 246..1907 17..1680 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 06:11:12 Download gff for BO12028.complete
Subject Subject Range Query Range Percent Splice Strand
X 3513004..3513652 1032..1680 99 <- Minus
X 3514002..3514172 861..1031 100 <- Minus
X 3514868..3514987 741..860 100 <- Minus
X 3519825..3519953 612..740 100 <- Minus
X 3520042..3520133 520..611 100 <- Minus
X 3522212..3522312 419..519 100 <- Minus
X 3523634..3523819 233..418 100 <- Minus
X 3523922..3524031 123..232 100 <- Minus
X 3530315..3530420 17..122 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:10:54 Download gff for BO12028.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 3407037..3407685 1032..1680 99 <- Minus
arm_X 3408035..3408205 861..1031 100 <- Minus
arm_X 3408901..3409020 741..860 100 <- Minus
arm_X 3413858..3413986 612..740 100 <- Minus
arm_X 3414075..3414166 520..611 100 <- Minus
arm_X 3416245..3416345 419..519 100 <- Minus
arm_X 3417667..3417852 233..418 100 <- Minus
arm_X 3417955..3418064 123..232 100 <- Minus
arm_X 3424348..3424453 17..122 100   Minus

BO12028.pep Sequence

Translation from 16 to 1696

> BO12028.pep
MPVSAKRLLRNFQFTSCDRNGKMLIHLLLIVSLLEAIGAFQPEFVESISN
VSVAVGRDATFTCHVRHLGGYRVGWLKADTKAIQAIHENVITHNPRVTVS
HLDQNTWNLHIKAVSEEDRGGYMCQLNTDPMKSQIGFLDVVIPPDFISED
TSSDVIVPEGSSVRLTCRARGYPEPIVTWRREDGNEIVLKDNVGTKTLAP
SFRGEVLKLSKISRNEMGSYLCIASNGVPPSVSKRISLSIHFHPVIQVPN
QLVGAPLGTDVQIECHVEASPKSINYWIKDTGEMIVTSGKYHVQESSQSM
YETKMSMIVRKFQKDDVGSYRCIAKNSLGEVDSSIRLYEIPGPNRNKNPL
NGGGKGGGAGGSLDADANDILKQKQQVKVTYQPEDEELQYGSVEDFEAEG
GEGGGLTPLSPHVYYTSGNKPATHKPGNSGGNQHLHQQHHHHHHHNNNNN
NQQHSGGPGGGPTGGDAGSLGGEMGGITRKPPPYYGGNTEVRGPIDNNEM
SSGSGDSRLCRGHHLPILLLPFARLILVRSWHCRHTFLMGLSQACLPGLL
LSLLASFLDH

BO12028.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 02:26:58
Subject Length Description Subject Range Query Range Score Percent Strand
CG32791-PC 554 CG32791-PC 1..554 1..554 2958 100 Plus
CG32791-PA 554 CG32791-PA 1..554 1..554 2958 100 Plus
CG32791-PB 432 CG32791-PB 1..432 123..554 2321 100 Plus
CG42343-PG 534 CG42343-PG 72..391 24..345 1016 56.8 Plus
CG42343-PF 555 CG42343-PF 84..412 28..345 997 54.7 Plus