Clone Sequence Records
BO12028.3prime Sequence
813 bp (712 high quality bases) assembled on 2006-04-20
> BO12028.3prime
ATGGTCTAGAAAGCTTGCTAAGAGGCTGAGCAAAAGTCCGGGCAGGCAAG
CCTGCGACAAGCCCATTAAGAACGTATGTCGGCAGTGCCAACTCCTGACC
AGGATGAGCCGCGCGAATGGAAGGAGAAGAATGGGTAAGTGGTGACCTCG
ACACAATCGCGAGTCTCCGGAGCCTGAGCTCATTTCGTTGTTGTCAATGG
GGCCTCGCACTTCCGTATTGCCACCATAATATGGCGGTGGCTTGCGGGTG
ATGCCTCCCATTTCGCCACCAAGTGAACCCGCATCACCGCCAGTTGGGCC
ACCACCTGGCCCACCACTGTGTTGCTGGTTGTTGTTGTTGTTGTTGTGGT
GGTGATGATGGTGGTGCTGCTGATGTAGATGCTGATTGCCGCCGGAGTTG
CCCGGCTTATGTGTGGCCGGTTTATTGCCGCTGGTGTAGTAAACGTGCGG
CGATAACGGCGTCAGGCCCCCGCCCTCGCCGCCTTCCGCCTCGAAATCCT
CGACGGATCCGTACTGCAGCTCCTCGTCCTCCGGCTGATAAGTGACTTTG
ACTTGTTGTTTCTGCTTCAAAATGTCATTGGCATCCGCATCCAGGCTTCC
GCCCGCTCCACCTCCTTTTCCGCCGCCGTTCAGCGGATTTTTATTACGAT
TCGGTCCGGGGATTTCGTATAAACGGATACTGCTGTCGACTTCGCCGAGT
GAGTTTTTGGCAATGCAGCGATAGGATCCGACATCATCCTTTTGAAACTT
CCTGACTATCATTGACATTTTGGTCTCGTACATGGACTGCGAACTCTCCT
GCACATGATACTT
BO12028.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:35:35
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG32791-PA | 1665 | CG32791-RA | 868..1662 | 813..19 | 3950 | 99.8 | Minus |
CG5575-PA | 1806 | ken-RA | 745..785 | 369..329 | 155 | 95.1 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 10:37:49
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG32791-RC | 7668 | CG32791-RC | 1113..1907 | 813..19 | 3960 | 99.9 | Minus |
CG32791-RB | 4540 | CG32791-RB | 2077..2871 | 813..19 | 3960 | 99.9 | Minus |
CG32791-RA | 3576 | CG32791-RA | 1113..1907 | 813..19 | 3960 | 99.9 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 10:37:45
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 3513006..3513653 | 19..666 | 3240 | 100 | Plus |
X | 23542271 | X | 3514002..3514149 | 666..813 | 725 | 99.3 | Plus |
Blast to na_te.dros performed 2015-02-12 10:37:47
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2472..2550 | 400..322 | 169 | 71.2 | Minus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2289..2362 | 395..320 | 167 | 74 | Minus |
BO12028.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:23:49 Download gff for
BO12028.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG32791-PA | 868..1665 | 15..813 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 04:54:32 Download gff for
BO12028.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG32791-PA | 868..1665 | 15..813 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 01:20:58 Download gff for
BO12028.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG32791-RA | 1113..1910 | 15..813 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 13:30:25 Download gff for
BO12028.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG32791-RA | 1113..1910 | 15..813 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 13:30:25 Download gff for
BO12028.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 3513003..3513652 | 15..665 | 99 | <- | Plus |
X | 3514002..3514149 | 666..813 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 01:20:58 Download gff for
BO12028.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 3407036..3407685 | 15..665 | 99 | <- | Plus |
arm_X | 3408035..3408182 | 666..813 | 99 | | Plus |
BO12028.5prime Sequence
861 bp (727 high quality bases) assembled on 2006-04-18
> BO12028.5prime
GAAGTTATCAGTCGACATGCCAGTCTCGGCGAAACGCTTACTTCGGAATT
TTCAGTTCACCAGCTGCGATCGGAATGGCAAAATGTTGATTCACCTGCTG
CTCATCGTTTCGCTTCTGGAAGCAATTGGCGCCTTTCAGCCGGAGTTCGT
GGAGAGCATTTCCAACGTGTCCGTGGCCGTCGGACGCGATGCAACCTTCA
CGTGTCACGTCCGACACTTGGGCGGCTATCGGGTGGGCTGGCTCAAGGCC
GACACCAAGGCCATTCAAGCCATCCACGAGAACGTAATCACGCACAATCC
TCGCGTCACGGTCAGTCACTTGGACCAGAACACGTGGAATTTGCATATAA
AGGCGGTTTCCGAGGAGGATCGCGGCGGTTATATGTGCCAACTGAACACG
GATCCGATGAAGAGTCAGATTGGCTTCCTGGACGTCGTGATTCCGCCGGA
CTTCATCAGCGAGGACACCTCATCCGATGTGATTGTGCCGGAGGGCAGTT
CCGTGCGATTGACATGTCGGGCTCGCGGTTATCCGGAACCGATTGTCACC
TGGCGCCGCGAAGATGGCAACGAAATTGTCCTGAAGGACAATGTGGGCAC
TAAGACCCTAGCGCCCTCTTTTCGCGGCGAGGTGCTAAAGCTATCATAGA
TCTCGAGGAACGAGATGGGCTCCTATCTGTGCATCGCCTCCAACGGAGTA
CCGCCATCGGTCTCAAAGCGCATCTCCCTCAGCATACACTTTCATCCGGT
CATCCAAGTGCCGAATCAATTAATCGGCGCACCCCTTGGCACTGATGTCC
AAATCGAGTGTCACGTCGAAACCCCGCCCAAATCATTTAACTACTGGATT
AAGGACACGGG
BO12028.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:35:36
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG32791-PA | 1665 | CG32791-RA | 1..845 | 17..861 | 4075 | 99.2 | Plus |
CG4814-PA | 648 | CG4814-RA | 397..443 | 665..711 | 135 | 91.4 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 05:27:06
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG32791-RC | 7668 | CG32791-RC | 246..1090 | 17..861 | 4135 | 99.3 | Plus |
CG32791-RA | 3576 | CG32791-RA | 246..1090 | 17..861 | 4135 | 99.3 | Plus |
CG32791-RB | 4540 | CG32791-RB | 1314..2054 | 121..861 | 3615 | 99.2 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 05:27:01
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 3523634..3523820 | 418..232 | 935 | 100 | Minus |
X | 23542271 | X | 3519825..3519955 | 740..610 | 640 | 99.2 | Minus |
X | 23542271 | X | 3523920..3524033 | 234..121 | 570 | 100 | Minus |
X | 23542271 | X | 3514867..3514987 | 861..741 | 530 | 95.9 | Minus |
X | 23542271 | X | 3530315..3530420 | 122..17 | 530 | 100 | Minus |
X | 23542271 | X | 3522211..3522314 | 520..417 | 520 | 100 | Minus |
X | 23542271 | X | 3520042..3520134 | 611..519 | 465 | 100 | Minus |
3L | 28110227 | 3L | 5433780..5433839 | 665..724 | 195 | 88.3 | Plus |
Blast to na_te.dros performed on 2015-02-12 05:27:04 has no hits.
BO12028.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:23:50 Download gff for
BO12028.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG32791-PA | 1..845 | 17..861 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 04:54:33 Download gff for
BO12028.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG32791-PA | 1..845 | 17..861 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 03:59:21 Download gff for
BO12028.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG32791-RA | 246..1090 | 17..861 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 07:27:22 Download gff for
BO12028.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG32791-RA | 246..1090 | 17..861 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 07:27:22 Download gff for
BO12028.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 3514867..3514987 | 741..861 | 95 | <- | Minus |
X | 3519825..3519953 | 612..740 | 99 | <- | Minus |
X | 3520042..3520133 | 520..611 | 100 | <- | Minus |
X | 3522212..3522312 | 419..519 | 100 | <- | Minus |
X | 3523634..3523819 | 233..418 | 100 | <- | Minus |
X | 3523922..3524031 | 123..232 | 100 | <- | Minus |
X | 3530315..3530420 | 17..122 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 03:59:21 Download gff for
BO12028.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 3408900..3409020 | 741..861 | 95 | <- | Minus |
arm_X | 3413858..3413986 | 612..740 | 99 | <- | Minus |
arm_X | 3414075..3414166 | 520..611 | 100 | <- | Minus |
arm_X | 3416245..3416345 | 419..519 | 100 | <- | Minus |
arm_X | 3417667..3417852 | 233..418 | 100 | <- | Minus |
arm_X | 3417955..3418064 | 123..232 | 100 | <- | Minus |
arm_X | 3424348..3424453 | 17..122 | 100 | | Minus |
BO12028.complete Sequence
1696 bp assembled on 2008-01-17
GenBank Submission: FJ632286
> BO12028.complete
GAAGTTATCAGTCGACATGCCAGTCTCGGCGAAACGCTTACTTCGGAATT
TTCAGTTCACCAGCTGCGATCGGAATGGCAAAATGTTGATTCACCTGCTG
CTCATCGTTTCGCTTCTGGAAGCAATTGGCGCCTTTCAGCCGGAGTTCGT
GGAGAGCATTTCCAACGTGTCCGTGGCCGTCGGACGCGATGCAACCTTCA
CGTGTCACGTCCGACACTTGGGCGGCTATCGGGTGGGCTGGCTCAAGGCC
GACACCAAGGCCATTCAAGCCATCCACGAGAACGTAATCACGCACAATCC
TCGCGTCACGGTCAGTCACTTGGACCAGAACACGTGGAATTTGCATATAA
AGGCGGTTTCCGAGGAGGATCGCGGCGGTTATATGTGCCAACTGAACACG
GATCCGATGAAGAGTCAGATTGGCTTCCTGGACGTCGTGATTCCGCCGGA
CTTCATCAGCGAGGACACCTCATCCGATGTGATTGTGCCGGAGGGCAGTT
CCGTGCGATTGACATGTCGGGCTCGCGGTTATCCGGAACCGATTGTCACC
TGGCGCCGCGAAGATGGCAACGAAATTGTCCTGAAGGACAATGTGGGCAC
TAAGACCCTAGCGCCCTCTTTTCGCGGCGAGGTGCTAAAGCTATCAAAGA
TCTCGAGGAACGAGATGGGCTCCTATCTGTGCATCGCCTCCAACGGAGTA
CCGCCATCGGTCTCAAAGCGCATCTCCCTCAGCATACACTTTCATCCGGT
CATCCAAGTGCCGAATCAATTAGTCGGCGCACCACTTGGCACTGATGTCC
AAATCGAGTGTCACGTCGAAGCCTCGCCCAAATCAATTAACTACTGGATT
AAGGACACGGGTGAGATGATTGTGACATCGGGCAAGTATCATGTGCAGGA
GAGCTCGCAGTCCATGTACGAGACCAAAATGTCAATGATAGTCAGGAAGT
TTCAAAAGGATGATGTCGGATCCTATCGCTGCATTGCCAAAAACTCACTC
GGCGAAGTCGACAGCAGTATCCGTTTATACGAAATCCCCGGACCGAATCG
TAATAAAAATCCGCTGAACGGCGGCGGAAAAGGAGGTGGAGCGGGCGGAA
GCCTGGATGCGGATGCCAATGACATTTTGAAGCAGAAACAACAAGTCAAA
GTCACTTATCAGCCGGAGGACGAGGAGCTGCAGTACGGATCCGTCGAGGA
TTTCGAGGCGGAAGGCGGCGAGGGCGGGGGCCTGACGCCGTTATCGCCGC
ACGTTTACTACACCAGCGGCAATAAACCGGCCACACATAAGCCGGGCAAC
TCCGGCGGCAATCAGCATCTACATCAGCAGCACCACCATCATCACCACCA
CAACAACAACAACAACAACCAGCAACACAGTGGTGGGCCAGGTGGTGGCC
CAACTGGCGGTGATGCGGGTTCACTTGGTGGCGAAATGGGAGGCATCACC
CGCAAGCCACCGCCATATTATGGTGGCAATACGGAAGTGCGAGGCCCCAT
TGACAACAACGAAATGAGCTCAGGCTCCGGAGACTCGCGATTGTGTCGAG
GTCACCACTTACCCATTCTTCTCCTTCCATTCGCGCGGCTCATCCTGGTC
AGGAGTTGGCACTGCCGACATACGTTCTTAATGGGCTTGTCGCAGGCTTG
CCTGCCCGGACTTTTGCTCAGCCTCTTAGCAAGCTTTCTAGACCAT
BO12028.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 05:26:11
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG32791-RC | 1665 | CG32791-PC | 1..1662 | 17..1678 | 8310 | 100 | Plus |
CG32791-RA | 1665 | CG32791-PA | 1..1662 | 17..1678 | 8310 | 100 | Plus |
CG32791-RB | 1299 | CG32791-PB | 1..1296 | 383..1678 | 6480 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 05:26:12
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG32791-RC | 7668 | CG32791-RC | 246..1907 | 17..1678 | 8310 | 100 | Plus |
CG32791-RA | 3576 | CG32791-RA | 246..1907 | 17..1678 | 8310 | 100 | Plus |
CG32791-RB | 4540 | CG32791-RB | 1314..2871 | 121..1678 | 7790 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 05:26:08
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 3513006..3513653 | 1678..1031 | 3240 | 100 | Minus |
X | 23542271 | X | 3523634..3523820 | 418..232 | 935 | 100 | Minus |
X | 23542271 | X | 3514002..3514173 | 1031..860 | 860 | 100 | Minus |
X | 23542271 | X | 3519825..3519955 | 740..610 | 655 | 100 | Minus |
X | 23542271 | X | 3514866..3514987 | 862..741 | 610 | 100 | Minus |
X | 23542271 | X | 3523920..3524033 | 234..121 | 570 | 100 | Minus |
X | 23542271 | X | 3530315..3530420 | 122..17 | 530 | 100 | Minus |
X | 23542271 | X | 3522211..3522314 | 520..417 | 520 | 100 | Minus |
X | 23542271 | X | 3520042..3520134 | 611..519 | 465 | 100 | Minus |
3L | 28110227 | 3L | 5433780..5433839 | 665..724 | 195 | 88.3 | Plus |
Blast to na_te.dros performed on 2014-11-28 05:26:10 has no hits.
BO12028.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 13:59:41 Download gff for
BO12028.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG32791-RA | 1..1665 | 17..1682 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-07-28 16:34:39 Download gff for
BO12028.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG32791-RA | 243..1904 | 17..1680 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:10:54 Download gff for
BO12028.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG32791-RA | 246..1907 | 17..1680 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 13:59:41 Download gff for
BO12028.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG32791-RA | 243..1907 | 17..1682 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 06:11:12 Download gff for
BO12028.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG32791-RA | 246..1907 | 17..1680 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 06:11:12 Download gff for
BO12028.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 3513004..3513652 | 1032..1680 | 99 | <- | Minus |
X | 3514002..3514172 | 861..1031 | 100 | <- | Minus |
X | 3514868..3514987 | 741..860 | 100 | <- | Minus |
X | 3519825..3519953 | 612..740 | 100 | <- | Minus |
X | 3520042..3520133 | 520..611 | 100 | <- | Minus |
X | 3522212..3522312 | 419..519 | 100 | <- | Minus |
X | 3523634..3523819 | 233..418 | 100 | <- | Minus |
X | 3523922..3524031 | 123..232 | 100 | <- | Minus |
X | 3530315..3530420 | 17..122 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:10:54 Download gff for
BO12028.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 3407037..3407685 | 1032..1680 | 99 | <- | Minus |
arm_X | 3408035..3408205 | 861..1031 | 100 | <- | Minus |
arm_X | 3408901..3409020 | 741..860 | 100 | <- | Minus |
arm_X | 3413858..3413986 | 612..740 | 100 | <- | Minus |
arm_X | 3414075..3414166 | 520..611 | 100 | <- | Minus |
arm_X | 3416245..3416345 | 419..519 | 100 | <- | Minus |
arm_X | 3417667..3417852 | 233..418 | 100 | <- | Minus |
arm_X | 3417955..3418064 | 123..232 | 100 | <- | Minus |
arm_X | 3424348..3424453 | 17..122 | 100 | | Minus |
BO12028.pep Sequence
Translation from 16 to 1696
> BO12028.pep
MPVSAKRLLRNFQFTSCDRNGKMLIHLLLIVSLLEAIGAFQPEFVESISN
VSVAVGRDATFTCHVRHLGGYRVGWLKADTKAIQAIHENVITHNPRVTVS
HLDQNTWNLHIKAVSEEDRGGYMCQLNTDPMKSQIGFLDVVIPPDFISED
TSSDVIVPEGSSVRLTCRARGYPEPIVTWRREDGNEIVLKDNVGTKTLAP
SFRGEVLKLSKISRNEMGSYLCIASNGVPPSVSKRISLSIHFHPVIQVPN
QLVGAPLGTDVQIECHVEASPKSINYWIKDTGEMIVTSGKYHVQESSQSM
YETKMSMIVRKFQKDDVGSYRCIAKNSLGEVDSSIRLYEIPGPNRNKNPL
NGGGKGGGAGGSLDADANDILKQKQQVKVTYQPEDEELQYGSVEDFEAEG
GEGGGLTPLSPHVYYTSGNKPATHKPGNSGGNQHLHQQHHHHHHHNNNNN
NQQHSGGPGGGPTGGDAGSLGGEMGGITRKPPPYYGGNTEVRGPIDNNEM
SSGSGDSRLCRGHHLPILLLPFARLILVRSWHCRHTFLMGLSQACLPGLL
LSLLASFLDH
BO12028.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 02:26:58
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG32791-PC | 554 | CG32791-PC | 1..554 | 1..554 | 2958 | 100 | Plus |
CG32791-PA | 554 | CG32791-PA | 1..554 | 1..554 | 2958 | 100 | Plus |
CG32791-PB | 432 | CG32791-PB | 1..432 | 123..554 | 2321 | 100 | Plus |
CG42343-PG | 534 | CG42343-PG | 72..391 | 24..345 | 1016 | 56.8 | Plus |
CG42343-PF | 555 | CG42343-PF | 84..412 | 28..345 | 997 | 54.7 | Plus |