Clone BO12029 Report

Search the DGRC for BO12029

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:120
Well:29
Vector:pDNR-Dual
Associated Gene/TranscriptCG31647-RB
Protein status:BO12029.pep: validated full length
Sequenced Size:343

Clone Sequence Records

BO12029.5prime Sequence

341 bp (340 high quality bases) assembled on 2006-04-18

> BO12029.5prime
GAAGTTATCAGTCGACATGATTGATGGGCATCTTGCGTACAAATTAACAC
CGGAATTACTCCTCGTGCACTGCAGGCCAAGTTCGGCGAACTTCCAACGA
TTTTCGACTCCACCCCAAACCCAAAAAAAAAAAGACATAACAAAAAAAGT
AACGAAAAAGGAAGATGCGTTTTGGCCCATTTCAAATGAAGCCGACTTTC
AATTAGGCAAAAACTTGGCAGCAAACCAAAAACAAAAGCAAGCTAATGAG
ACGACGACTGAGTTTGGCCGGAGGTGCGATCGTGACTTCGAATGCGACCA
GTGTCAAAGGCGCAGCTGGATATTCGCAAGCTTTCTAGACC

BO12029.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:35:37
Subject Length Description Subject Range Query Range Score Percent Strand
CG31647-PA 930 CG31647-RA 618..927 16..325 1550 100 Plus
CG31647-PB 312 CG31647-RB 1..309 17..325 1545 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed on 2015-02-10 22:44:24 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 22:44:17
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 5436767..5437048 297..16 1410 100 Minus
Blast to na_te.dros performed 2015-02-10 22:44:21
Subject Length Description Subject Range Query Range Score Percent Strand
invader6 4885 invader6 INVADER6 4885bp 3525..3577 107..159 103 66 Plus

BO12029.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:23:52 Download gff for BO12029.5prime
Subject Subject Range Query Range Percent Splice Strand
CG31647-PA 615..930 12..328 98   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 04:54:36 Download gff for BO12029.5prime
Subject Subject Range Query Range Percent Splice Strand
CG31647-PA 615..930 12..328 98   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 00:14:03 Download gff for BO12029.5prime
Subject Subject Range Query Range Percent Splice Strand
2L 5436684..5436711 298..325 100 <- Minus
2L 5436767..5437051 12..297 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 00:14:03 Download gff for BO12029.5prime
Subject Subject Range Query Range Percent Splice Strand
2L 5436684..5436711 298..325 100 <- Minus
2L 5436767..5437051 12..297 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-22 05:43:00 Download gff for BO12029.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 5436684..5436711 298..325 100 <- Minus
arm_2L 5436767..5437051 12..297 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-22 05:43:00 Download gff for BO12029.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 5436684..5436711 298..325 100 <- Minus
arm_2L 5436767..5437051 12..297 99   Minus

BO12029.3prime Sequence

341 bp (340 high quality bases) assembled on 2006-04-20

> BO12029.3prime
ATGGTCTAGAAAGCTTGCGAATATCCAGCTGCGCCTTTGACACTGGTCGC
ATTCGAAGTCACGATCGCACCTCCGGCCAAACTCAGTCGTCGTCTCATTA
GCTTGCTTTTGTTTTTGGTTTGCTGCCAAGTTTTTGCCTAATTGAAAGTC
GGCTTCATTTGAAATGGGCCAAAACGCATCTTCCTTTTTCGTTACTTTTT
TTGTTATGTCTTTTTTTTTTTGGGTTTGGGGTGGAGTCGAAAATCGTTGG
AAGTTCGCCGAACTTGGCCTGCAGTGCACGAGGAGTAATTCCGGTGTTAA
TTTGTACGCAAGATGCCCATCAATCATGTCGACTGATAACT

BO12029.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:35:37
Subject Length Description Subject Range Query Range Score Percent Strand
CG31647-PA 930 CG31647-RA 618..927 328..19 1550 100 Minus
CG31647-PB 312 CG31647-RB 1..309 327..19 1545 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed on 2015-02-01 04:58:27 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2015-02-01 04:58:23
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 5436767..5437048 47..328 1410 100 Plus
Blast to na_te.dros performed 2015-02-01 04:58:25
Subject Length Description Subject Range Query Range Score Percent Strand
invader6 4885 invader6 INVADER6 4885bp 3525..3577 237..185 103 66 Minus

BO12029.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:23:51 Download gff for BO12029.3prime
Subject Subject Range Query Range Percent Splice Strand
CG31647-PA 615..930 16..332 98   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 04:54:35 Download gff for BO12029.3prime
Subject Subject Range Query Range Percent Splice Strand
CG31647-PA 615..930 16..332 98   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-01 05:51:09 Download gff for BO12029.3prime
Subject Subject Range Query Range Percent Splice Strand
2L 5436684..5436711 19..46 100 <- Plus
2L 5436767..5437051 47..332 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-01 05:51:09 Download gff for BO12029.3prime
Subject Subject Range Query Range Percent Splice Strand
2L 5436684..5436711 19..46 100 <- Plus
2L 5436767..5437051 47..332 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-07 15:10:25 Download gff for BO12029.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 5436767..5437051 47..332 99   Plus
arm_2L 5436684..5436711 19..46 100 <- Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-07 15:10:25 Download gff for BO12029.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 5436767..5437051 47..332 99   Plus
arm_2L 5436684..5436711 19..46 100 <- Plus

BO12029.complete Sequence

343 bp assembled on 2006-10-11

GenBank Submission: FJ632287

> BO12029.complete
GAAGTTATCAGTCGACATGATTGATGGGCATCTTGCGTACAAATTAACAC
CGGAATTACTCCTCGTGCACTGCAGGCCAAGTTCGGCGAACTTCCAACGA
TTTTCGACTCCACCCCAAACCCAAAAAAAAAAAGACATAACAAAAAAAGT
AACGAAAAAGGAAGATGCGTTTTGGCCCATTTCAAATGAAGCCGACTTTC
AATTAGGCAAAAACTTGGCAGCAAACCAAAAACAAAAGCAAGCTAATGAG
ACGACGACTGAGTTTGGCCGGAGGTGCGATCGTGACTTCGAATGCGACCA
GTGTCAAAGGCGCAGCTGGATATTCGCAAGCTTTCTAGACCAT

BO12029.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed on 2014-11-28 01:10:31 has no hits.
Blast to dmel-all-transcript-r6.02.fasta performed on 2014-11-28 01:10:31 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 01:10:29
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 5436767..5437048 297..16 1410 100 Minus
Blast to na_te.dros performed 2014-11-28 01:10:30
Subject Length Description Subject Range Query Range Score Percent Strand
invader6 4885 invader6 INVADER6 4885bp 3525..3577 107..159 103 66 Plus

BO12029.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:59:24 Download gff for BO12029.complete
Subject Subject Range Query Range Percent Splice Strand
CG31647-RA 615..930 12..328 98   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:31:29 Download gff for BO12029.complete
Subject Subject Range Query Range Percent Splice Strand
CG31647-RA 615..927 12..325 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:59:24 Download gff for BO12029.complete
Subject Subject Range Query Range Percent Splice Strand
CG31647-RA 615..927 12..325 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:46:30 Download gff for BO12029.complete
Subject Subject Range Query Range Percent Splice Strand
2L 5436681..5436711 298..327 93 <- Minus
2L 5436767..5437047 17..297 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:46:30 Download gff for BO12029.complete
Subject Subject Range Query Range Percent Splice Strand
2L 5436681..5436711 298..327 93 <- Minus
2L 5436767..5437047 17..297 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:41:09 Download gff for BO12029.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 5436767..5437047 17..297 100   Minus
arm_2L 5436681..5436711 298..327 93 <- Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:41:09 Download gff for BO12029.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 5436767..5437047 17..297 100   Minus
arm_2L 5436681..5436711 298..327 93 <- Minus

BO12029.pep Sequence

Translation from 16 to 343

> BO12029.pep
MIDGHLAYKLTPELLLVHCRPSSANFQRFSTPPQTQKKKDITKKVTKKED
AFWPISNEADFQLGKNLAANQKQKQANETTTEFGRRCDRDFECDQCQRRS
WIFASFLDH
Sequence BO12029.pep has no blast hits.