Clone Sequence Records
BO12029.5prime Sequence
341 bp (340 high quality bases) assembled on 2006-04-18
> BO12029.5prime
GAAGTTATCAGTCGACATGATTGATGGGCATCTTGCGTACAAATTAACAC
CGGAATTACTCCTCGTGCACTGCAGGCCAAGTTCGGCGAACTTCCAACGA
TTTTCGACTCCACCCCAAACCCAAAAAAAAAAAGACATAACAAAAAAAGT
AACGAAAAAGGAAGATGCGTTTTGGCCCATTTCAAATGAAGCCGACTTTC
AATTAGGCAAAAACTTGGCAGCAAACCAAAAACAAAAGCAAGCTAATGAG
ACGACGACTGAGTTTGGCCGGAGGTGCGATCGTGACTTCGAATGCGACCA
GTGTCAAAGGCGCAGCTGGATATTCGCAAGCTTTCTAGACC
BO12029.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:35:37
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG31647-PA | 930 | CG31647-RA | 618..927 | 16..325 | 1550 | 100 | Plus |
CG31647-PB | 312 | CG31647-RB | 1..309 | 17..325 | 1545 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed on 2015-02-10 22:44:24 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 22:44:17
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 5436767..5437048 | 297..16 | 1410 | 100 | Minus |
Blast to na_te.dros performed 2015-02-10 22:44:21
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
invader6 | 4885 | invader6 INVADER6 4885bp | 3525..3577 | 107..159 | 103 | 66 | Plus |
BO12029.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:23:52 Download gff for
BO12029.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31647-PA | 615..930 | 12..328 | 98 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 04:54:36 Download gff for
BO12029.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31647-PA | 615..930 | 12..328 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 00:14:03 Download gff for
BO12029.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 5436684..5436711 | 298..325 | 100 | <- | Minus |
2L | 5436767..5437051 | 12..297 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 00:14:03 Download gff for
BO12029.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 5436684..5436711 | 298..325 | 100 | <- | Minus |
2L | 5436767..5437051 | 12..297 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-22 05:43:00 Download gff for
BO12029.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 5436684..5436711 | 298..325 | 100 | <- | Minus |
arm_2L | 5436767..5437051 | 12..297 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-22 05:43:00 Download gff for
BO12029.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 5436684..5436711 | 298..325 | 100 | <- | Minus |
arm_2L | 5436767..5437051 | 12..297 | 99 | | Minus |
BO12029.3prime Sequence
341 bp (340 high quality bases) assembled on 2006-04-20
> BO12029.3prime
ATGGTCTAGAAAGCTTGCGAATATCCAGCTGCGCCTTTGACACTGGTCGC
ATTCGAAGTCACGATCGCACCTCCGGCCAAACTCAGTCGTCGTCTCATTA
GCTTGCTTTTGTTTTTGGTTTGCTGCCAAGTTTTTGCCTAATTGAAAGTC
GGCTTCATTTGAAATGGGCCAAAACGCATCTTCCTTTTTCGTTACTTTTT
TTGTTATGTCTTTTTTTTTTTGGGTTTGGGGTGGAGTCGAAAATCGTTGG
AAGTTCGCCGAACTTGGCCTGCAGTGCACGAGGAGTAATTCCGGTGTTAA
TTTGTACGCAAGATGCCCATCAATCATGTCGACTGATAACT
BO12029.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:35:37
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG31647-PA | 930 | CG31647-RA | 618..927 | 328..19 | 1550 | 100 | Minus |
CG31647-PB | 312 | CG31647-RB | 1..309 | 327..19 | 1545 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed on 2015-02-01 04:58:27 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2015-02-01 04:58:23
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 5436767..5437048 | 47..328 | 1410 | 100 | Plus |
Blast to na_te.dros performed 2015-02-01 04:58:25
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
invader6 | 4885 | invader6 INVADER6 4885bp | 3525..3577 | 237..185 | 103 | 66 | Minus |
BO12029.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:23:51 Download gff for
BO12029.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31647-PA | 615..930 | 16..332 | 98 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 04:54:35 Download gff for
BO12029.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31647-PA | 615..930 | 16..332 | 98 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-01 05:51:09 Download gff for
BO12029.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 5436684..5436711 | 19..46 | 100 | <- | Plus |
2L | 5436767..5437051 | 47..332 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-01 05:51:09 Download gff for
BO12029.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 5436684..5436711 | 19..46 | 100 | <- | Plus |
2L | 5436767..5437051 | 47..332 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-07 15:10:25 Download gff for
BO12029.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 5436767..5437051 | 47..332 | 99 | | Plus |
arm_2L | 5436684..5436711 | 19..46 | 100 | <- | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-07 15:10:25 Download gff for
BO12029.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 5436767..5437051 | 47..332 | 99 | | Plus |
arm_2L | 5436684..5436711 | 19..46 | 100 | <- | Plus |
BO12029.complete Sequence
343 bp assembled on 2006-10-11
GenBank Submission: FJ632287
> BO12029.complete
GAAGTTATCAGTCGACATGATTGATGGGCATCTTGCGTACAAATTAACAC
CGGAATTACTCCTCGTGCACTGCAGGCCAAGTTCGGCGAACTTCCAACGA
TTTTCGACTCCACCCCAAACCCAAAAAAAAAAAGACATAACAAAAAAAGT
AACGAAAAAGGAAGATGCGTTTTGGCCCATTTCAAATGAAGCCGACTTTC
AATTAGGCAAAAACTTGGCAGCAAACCAAAAACAAAAGCAAGCTAATGAG
ACGACGACTGAGTTTGGCCGGAGGTGCGATCGTGACTTCGAATGCGACCA
GTGTCAAAGGCGCAGCTGGATATTCGCAAGCTTTCTAGACCAT
BO12029.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed on 2014-11-28 01:10:31 has no hits.
Blast to dmel-all-transcript-r6.02.fasta performed on 2014-11-28 01:10:31 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 01:10:29
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 5436767..5437048 | 297..16 | 1410 | 100 | Minus |
Blast to na_te.dros performed 2014-11-28 01:10:30
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
invader6 | 4885 | invader6 INVADER6 4885bp | 3525..3577 | 107..159 | 103 | 66 | Plus |
BO12029.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:59:24 Download gff for
BO12029.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31647-RA | 615..930 | 12..328 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:31:29 Download gff for
BO12029.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31647-RA | 615..927 | 12..325 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:59:24 Download gff for
BO12029.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31647-RA | 615..927 | 12..325 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:46:30 Download gff for
BO12029.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 5436681..5436711 | 298..327 | 93 | <- | Minus |
2L | 5436767..5437047 | 17..297 | 100 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:46:30 Download gff for
BO12029.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 5436681..5436711 | 298..327 | 93 | <- | Minus |
2L | 5436767..5437047 | 17..297 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:41:09 Download gff for
BO12029.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 5436767..5437047 | 17..297 | 100 | | Minus |
arm_2L | 5436681..5436711 | 298..327 | 93 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:41:09 Download gff for
BO12029.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 5436767..5437047 | 17..297 | 100 | | Minus |
arm_2L | 5436681..5436711 | 298..327 | 93 | <- | Minus |
BO12029.pep Sequence
Translation from 16 to 343
> BO12029.pep
MIDGHLAYKLTPELLLVHCRPSSANFQRFSTPPQTQKKKDITKKVTKKED
AFWPISNEADFQLGKNLAANQKQKQANETTTEFGRRCDRDFECDQCQRRS
WIFASFLDH
Sequence BO12029.pep has no blast hits.