Clone Sequence Records
BO12031.3prime Sequence
338 bp (337 high quality bases) assembled on 2006-04-18
> BO12031.3prime
ATGGTCTAGAAAGCTTGCTTTTTTATCAGTGTAGGTCATGACGACGCCGA
CAACTAGGGCCATAACGGTAAATCCCTGAGCCGCGATACGACTTCGCATC
ATCAGCTGCGACATCTTGCGATTGCCAGTGCGAAAGTTGTATAAGCCAGC
TGTGAGCGCCGCTGTAGTGGCCAAACATCCCAACGGAACCAGCGGATTCT
CCTTGATCTTGCGCTGCAACTTCTCCTTGGTCGTTTCCACCTCGGCAACG
GGTCCCAGGTCCTGGCGCAATTGTATCCAATCCAGTTCCTCCTCCGGAAG
CGAGACTTCAATTTTGTTCGACATGTCGACTGATAACT
BO12031.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:35:39
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG9921-PA | 309 | CG9921-RA | 1..306 | 324..19 | 1530 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-07 02:52:59
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG9921-RC | 985 | CG9921-RC | 392..701 | 328..19 | 1535 | 99.7 | Minus |
| CG9921-RB | 685 | CG9921-RB | 92..401 | 328..19 | 1535 | 99.7 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-07 02:52:54
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 16331565..16331726 | 19..180 | 810 | 100 | Plus |
| X | 23542271 | X | 16331808..16331957 | 179..328 | 735 | 99.3 | Plus |
Blast to na_te.dros performed on 2015-02-07 02:52:57 has no hits.
BO12031.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:23:56 Download gff for
BO12031.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9921-PA | 1..309 | 15..324 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 04:54:42 Download gff for
BO12031.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9921-PA | 1..309 | 15..324 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-11 11:29:08 Download gff for
BO12031.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9921-RB | 86..406 | 12..335 | 97 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-07 06:07:56 Download gff for
BO12031.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9921-RB | 86..406 | 12..335 | 97 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-07 06:07:56 Download gff for
BO12031.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 16331560..16331725 | 12..179 | 98 | <- | Plus |
| X | 16331809..16331963 | 180..335 | 97 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-11 11:29:08 Download gff for
BO12031.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 16225593..16225758 | 12..179 | 98 | <- | Plus |
| arm_X | 16225842..16225996 | 180..335 | 97 | | Plus |
BO12031.5prime Sequence
338 bp (337 high quality bases) assembled on 2006-04-18
> BO12031.5prime
GAAGTTATCAGTCGACATGTCGAACAAAATTGAAGTCTCGCTTCCGGAGG
AGGAACTGGATTGGATACAATTGCGCCAGGACCTGGGACCCGTTGCCGAG
GTGGAAACGACCAAGGAGAAGTTGCAGCGCAAGATCAAGGAGAATCCGCT
GGTTCCGTTGGGATGTTTGGCCACTACAGCGGCGCTCACAGCTGGCTTAT
ACAACTTTCGCACTGGCAATCGCAAGATGTCGCAGCTGATGATGCGAAGT
CGTATCGCGGCTCAGGGATTTACCGTTATGGCCCTAGTTGTCGGCGTCGT
CATGACCTACACTGATAAAAAAGCAAGCTTTCTAGACC
BO12031.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:35:40
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG9921-PA | 309 | CG9921-RA | 1..306 | 17..322 | 1530 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-04 05:35:07
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG9921-RC | 985 | CG9921-RC | 392..701 | 13..322 | 1535 | 99.7 | Plus |
| CG9921-RB | 685 | CG9921-RB | 92..401 | 13..322 | 1535 | 99.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-04 05:35:02
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 16331565..16331726 | 322..161 | 810 | 100 | Minus |
| X | 23542271 | X | 16331808..16331957 | 162..13 | 735 | 99.3 | Minus |
Blast to na_te.dros performed on 2015-02-04 05:35:05 has no hits.
BO12031.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:23:57 Download gff for
BO12031.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9921-PA | 1..309 | 17..326 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 04:54:43 Download gff for
BO12031.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9921-PA | 1..309 | 17..326 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-10 07:15:26 Download gff for
BO12031.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9921-RB | 86..406 | 6..329 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-04 06:47:09 Download gff for
BO12031.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9921-RB | 86..406 | 6..329 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-04 06:47:09 Download gff for
BO12031.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 16331560..16331725 | 162..329 | 98 | <- | Minus |
| X | 16331809..16331963 | 6..161 | 97 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-10 07:15:26 Download gff for
BO12031.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 16225593..16225758 | 162..329 | 98 | <- | Minus |
| arm_X | 16225842..16225996 | 6..161 | 97 | | Minus |
BO12031.complete Sequence
340 bp assembled on 2006-10-11
GenBank Submission: FJ632288
> BO12031.complete
GAAGTTATCAGTCGACATGTCGAACAAAATTGAAGTCTCGCTTCCGGAGG
AGGAACTGGATTGGATACAATTGCGCCAGGACCTGGGACCCGTTGCCGAG
GTGGAAACGACCAAGGAGAAGTTGCAGCGCAAGATCAAGGAGAATCCGCT
GGTTCCGTTGGGATGTTTGGCCACTACAGCGGCGCTCACAGCTGGCTTAT
ACAACTTTCGCACTGGCAATCGCAAGATGTCGCAGCTGATGATGCGAAGT
CGTATCGCGGCTCAGGGATTTACCGTTATGGCCCTAGTTGTCGGCGTCGT
CATGACCTACACTGATAAAAAAGCAAGCTTTCTAGACCAT
BO12031.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 16:54:21
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG9921-RC | 309 | CG9921-PC | 1..306 | 17..322 | 1530 | 100 | Plus |
| CG9921-RB | 309 | CG9921-PB | 1..306 | 17..322 | 1530 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:54:23
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG9921-RC | 985 | CG9921-RC | 392..701 | 13..322 | 1535 | 99.7 | Plus |
| CG9921-RB | 685 | CG9921-RB | 92..401 | 13..322 | 1535 | 99.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 16:54:19
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 16331565..16331726 | 322..161 | 810 | 100 | Minus |
| X | 23542271 | X | 16331808..16331957 | 162..13 | 735 | 99.3 | Minus |
Blast to na_te.dros performed on 2014-11-27 16:54:20 has no hits.
BO12031.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:54:56 Download gff for
BO12031.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9921-RA | 1..309 | 17..326 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:27:15 Download gff for
BO12031.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9921-RA | 186..506 | 6..329 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:55:52 Download gff for
BO12031.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9921-RB | 96..395 | 17..316 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:54:56 Download gff for
BO12031.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9921-RA | 186..506 | 6..329 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 17:29:48 Download gff for
BO12031.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9921-RB | 96..395 | 17..316 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 17:29:48 Download gff for
BO12031.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 16331571..16331725 | 162..316 | 100 | <- | Minus |
| X | 16331809..16331953 | 17..161 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:55:52 Download gff for
BO12031.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 16225604..16225758 | 162..316 | 100 | <- | Minus |
| arm_X | 16225842..16225986 | 17..161 | 100 | | Minus |
BO12031.pep Sequence
Translation from 16 to 340
> BO12031.pep
MSNKIEVSLPEEELDWIQLRQDLGPVAEVETTKEKLQRKIKENPLVPLGC
LATTAALTAGLYNFRTGNRKMSQLMMRSRIAAQGFTVMALVVGVVMTYTD
KKASFLDH
BO12031.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 19:18:58
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG9921-PC | 102 | CG9921-PC | 1..102 | 1..102 | 510 | 100 | Plus |
| CG9921-PB | 102 | CG9921-PB | 1..102 | 1..102 | 510 | 100 | Plus |
