Clone Sequence Records
BO12033.3prime Sequence
485 bp (484 high quality bases) assembled on 2006-04-18
> BO12033.3prime
ATGGTCTAGAAAGCTTGCACGTCGGCCCAGGCCAAAGTTGAAGGGTTGCG
GACGCGTCGTTCGCTTGTTCTGTCGGCCAGGTCGCACAGCACGCTCGGCT
GCCAAGTAGTTCGCTGGCGGCACTCTGTAGTCGATCTCGTTGTCCTGGTC
GTAGTCGTAGTCGCTGCGTTTGCCCAGTCCGAAGGAGTAGGGACGAGACC
TCTTGCCCAGACCGAAGTTATAGACCGGCAGGCGCTTCATGCCCGGTCCG
CCGTTCGTGTACATATAGGCCCGTCGTCCCAGACCGAAGGCGTACCGCTC
CACCCGCTTGTCGATGTTGTCGCCACCGTTGTCGGCCATCTCGTCGGCGG
CCAGCAGGACATCGGCATCGCTGTCTCCGCTGCGCTGATCCTGGCCAATT
ACCGGGGAGCTGGCGATGTAGCCGACGCAGCAAACTGCCAGCAGTAGGAG
GTGGGCGTGAAGGGAGTTCATGTCGACTGATAACT
BO12033.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:35:42
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG13633-PA | 456 | Ast-RA | 1..453 | 471..19 | 2265 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 20:53:50
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| AstA-RB | 1054 | CG13633-RB | 273..725 | 471..19 | 2265 | 100 | Minus |
| AstA-RA | 1459 | CG13633-RA | 276..728 | 471..19 | 2265 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 20:53:45
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 24761390..24761774 | 87..471 | 1925 | 100 | Plus |
| 3R | 32079331 | 3R | 24761261..24761333 | 19..91 | 350 | 98.6 | Plus |
Blast to na_te.dros performed on 2015-02-10 20:53:48 has no hits.
BO12033.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:24:00 Download gff for
BO12033.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Ast-PA | 1..456 | 15..471 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 04:54:46 Download gff for
BO12033.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG13633-PA | 1..456 | 15..471 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 09:57:00 Download gff for
BO12033.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Ast-RA | 266..732 | 14..482 | 98 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:28:13 Download gff for
BO12033.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| AstA-RA | 266..732 | 14..482 | 98 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:28:13 Download gff for
BO12033.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 24761257..24761328 | 14..86 | 97 | <- | Plus |
| 3R | 24761390..24761784 | 87..482 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 09:57:00 Download gff for
BO12033.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 20586979..20587050 | 14..86 | 97 | <- | Plus |
| arm_3R | 20587112..20587506 | 87..482 | 98 | | Plus |
BO12033.5prime Sequence
485 bp (484 high quality bases) assembled on 2006-04-18
> BO12033.5prime
GAAGTTATCAGTCGACATGAACTCCCTTCACGCCCACCTCCTACTGCTGG
CAGTTTGCTGCGTCGGCTACATCGCCAGCTCCCCGGTAATTGGCCAGGAT
CAGCGCAGCGGAGACAGCGATGCCGATGTCCTGCTGGCCGCCGACGAGAT
GGCCGACAACGGTGGCGACAACATCGACAAGCGGGTGGAGCGGTACGCCT
TCGGTCTGGGACGACGGGCCTATATGTACACGAACGGCGGACCGGGCATG
AAGCGCCTGCCGGTCTATAACTTCGGTCTGGGCAAGAGGTCTCGTCCCTA
CTCCTTCGGACTGGGCAAACGCAGCGACTACGACTACGACCAGGACAACG
AGATCGACTACAGAGTGCCGCCAGCGAACTACTTGGCAGCCGAGCGTGCT
GTGCGACCTGGCCGACAGAACAAGCGAACGACGCGTCCGCAACCCTTCAA
CTTTGGCCTGGGCCGACGTGCAAGCTTTCTAGACC
BO12033.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:35:43
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG13633-PA | 456 | Ast-RA | 1..453 | 17..469 | 2265 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 09:30:37
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| AstA-RB | 1054 | CG13633-RB | 273..725 | 17..469 | 2265 | 100 | Plus |
| AstA-RA | 1459 | CG13633-RA | 276..728 | 17..469 | 2265 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 09:30:32
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 24761390..24761774 | 401..17 | 1925 | 100 | Minus |
| 3R | 32079331 | 3R | 24761261..24761333 | 469..397 | 350 | 98.6 | Minus |
Blast to na_te.dros performed on 2015-02-13 09:30:35 has no hits.
BO12033.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:24:01 Download gff for
BO12033.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Ast-PA | 1..456 | 17..473 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 04:54:47 Download gff for
BO12033.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG13633-PA | 1..456 | 17..473 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-02 15:55:39 Download gff for
BO12033.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Ast-RA | 266..732 | 6..474 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 14:03:15 Download gff for
BO12033.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| AstA-RA | 266..732 | 6..474 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 14:03:15 Download gff for
BO12033.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 24761257..24761328 | 402..474 | 97 | <- | Minus |
| 3R | 24761390..24761784 | 6..401 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-02 15:55:39 Download gff for
BO12033.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 20586979..20587050 | 402..474 | 97 | <- | Minus |
| arm_3R | 20587112..20587506 | 6..401 | 98 | | Minus |
BO12033.complete Sequence
487 bp assembled on 2006-10-11
GenBank Submission: FJ632289
> BO12033.complete
GAAGTTATCAGTCGACATGAACTCCCTTCACGCCCACCTCCTACTGCTGG
CAGTTTGCTGCGTCGGCTACATCGCCAGCTCCCCGGTAATTGGCCAGGAT
CAGCGCAGCGGAGACAGCGATGCCGATGTCCTGCTGGCCGCCGACGAGAT
GGCCGACAACGGTGGCGACAACATCGACAAGCGGGTGGAGCGGTACGCCT
TCGGTCTGGGACGACGGGCCTATATGTACACGAACGGCGGACCGGGCATG
AAGCGCCTGCCGGTCTATAACTTCGGTCTGGGCAAGAGGTCTCGTCCCTA
CTCCTTCGGACTGGGCAAACGCAGCGACTACGACTACGACCAGGACAACG
AGATCGACTACAGAGTGCCGCCAGCGAACTACTTGGCAGCCGAGCGTGCT
GTGCGACCTGGCCGACAGAACAAGCGAACGACGCGTCCGCAACCCTTCAA
CTTTGGCCTGGGCCGACGTGCAAGCTTTCTAGACCAT
BO12033.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 13:49:24
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| AstA-RB | 456 | CG13633-PB | 1..453 | 17..469 | 2265 | 100 | Plus |
| AstA-RA | 456 | CG13633-PA | 1..453 | 17..469 | 2265 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 13:49:25
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| AstA-RB | 1054 | CG13633-RB | 273..725 | 17..469 | 2265 | 100 | Plus |
| AstA-RA | 1459 | CG13633-RA | 276..728 | 17..469 | 2265 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 13:49:22
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 24761390..24761774 | 401..17 | 1925 | 100 | Minus |
| 3R | 32079331 | 3R | 24761261..24761333 | 469..397 | 350 | 98.6 | Minus |
Blast to na_te.dros performed on 2014-11-27 13:49:23 has no hits.
BO12033.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:54:57 Download gff for
BO12033.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Ast-RA | 1..456 | 17..473 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:27:17 Download gff for
BO12033.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Ast-RA | 253..719 | 6..474 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 08:33:33 Download gff for
BO12033.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Ast-RA | 276..728 | 17..471 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:54:57 Download gff for
BO12033.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Ast-RA | 253..719 | 6..474 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:27:20 Download gff for
BO12033.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| AstA-RA | 276..728 | 17..471 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 14:27:20 Download gff for
BO12033.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 24761259..24761328 | 402..471 | 97 | <- | Minus |
| 3R | 24761390..24761774 | 17..401 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 08:33:33 Download gff for
BO12033.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 20586981..20587050 | 402..471 | 97 | <- | Minus |
| arm_3R | 20587112..20587496 | 17..401 | 100 | | Minus |
BO12033.pep Sequence
Translation from 16 to 487
> BO12033.pep
MNSLHAHLLLLAVCCVGYIASSPVIGQDQRSGDSDADVLLAADEMADNGG
DNIDKRVERYAFGLGRRAYMYTNGGPGMKRLPVYNFGLGKRSRPYSFGLG
KRSDYDYDQDNEIDYRVPPANYLAAERAVRPGRQNKRTTRPQPFNFGLGR
RASFLDH
BO12033.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 19:18:57
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| AstA-PB | 151 | CG13633-PB | 1..151 | 1..151 | 805 | 100 | Plus |
| AstA-PA | 151 | CG13633-PA | 1..151 | 1..151 | 805 | 100 | Plus |
