Clone Sequence Records
BO12040.3prime Sequence
557 bp (556 high quality bases) assembled on 2006-04-20
> BO12040.3prime
ATGGTCTAGAAAGCTTGCTAACTTATGGTTCGACGTTAACCAAATGAGGC
CCTCGGACAGGCCATCGCCGGATGTGGCACATGATGGTTGTACATACCAA
TTGCGATCTCTTATTCTAGTTAAACCTAGTTTTTCCTGGATTTCATGGGG
TTTCATTGCATCAGGCAGATCCTGCTTGTTAGCAAATATCAGTATGATGG
CGTCGCGCATCTCCCTATCGTTAATTATCCTATGCAGCTCCGTGCGCGCC
TCGTCTATCCGATCCCGATCCGCACAATCCACGACGAAGATCAGACCCTG
TGTACCCGTGTAATAGTGTCGCCATAGCGGTCGAATCTTATCCTGCCCAC
CGACGTCCCACACATTGAACTTGACATTCTTATAGGTGACGGTTTCCACA
TTAAAGCCCACAGTGGGTATCGTTGTAACAGATTGGCCAAGTTTCAGTTT
GTACAGAATCGTTGTTTTTCCAGCCGCGTCCAGTCCGAGCATGAGAATTC
GCATTTCCTTGTTGCCGAAAATTTTTGATAGTAACTTTCCCATGTCGACT
GATAACT
BO12040.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:35:50
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG8156-PD | 528 | Arf51F-RD | 1..525 | 543..19 | 2625 | 100 | Minus |
| CG8156-PB | 528 | Arf51F-RB | 1..525 | 543..19 | 2625 | 100 | Minus |
| CG8156-PC | 528 | Arf51F-RC | 1..525 | 543..19 | 2625 | 100 | Minus |
| CG8156-PA | 528 | Arf51F-RA | 1..525 | 543..19 | 2625 | 100 | Minus |
| CG8156-PE | 528 | Arf51F-RE | 1..525 | 543..19 | 2625 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 19:23:29
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Arf51F-RE | 1357 | CG8156-RE | 281..806 | 544..19 | 2630 | 100 | Minus |
| Arf51F-RA | 1352 | CG8156-RA | 276..801 | 544..19 | 2630 | 100 | Minus |
| Arf51F-RC | 1370 | CG8156-RC | 294..819 | 544..19 | 2630 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 19:23:25
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 15323841..15324147 | 465..159 | 1520 | 99.7 | Minus |
| 2R | 25286936 | 2R | 15324201..15324341 | 159..19 | 705 | 100 | Minus |
| 2R | 25286936 | 2R | 15323483..15323565 | 544..462 | 415 | 100 | Minus |
| 3L | 28110227 | 3L | 22869850..22869953 | 416..519 | 220 | 80.8 | Plus |
| 4 | 1348131 | 4 | 1124442..1124648 | 482..276 | 210 | 73.4 | Minus |
Blast to na_te.dros performed on 2015-02-12 19:23:27 has no hits.
BO12040.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:24:10 Download gff for
BO12040.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8156-PA | 1..528 | 16..543 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 04:55:00 Download gff for
BO12040.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8156-PE | 1..528 | 16..543 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 03:54:42 Download gff for
BO12040.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Arf51F-RC | 286..819 | 19..553 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 21:03:49 Download gff for
BO12040.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Arf51F-RC | 286..819 | 19..553 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 21:03:49 Download gff for
BO12040.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 15323475..15323565 | 462..553 | 96 | -> | Minus |
| 2R | 15323845..15324147 | 159..461 | 100 | -> | Minus |
| 2R | 15324202..15324341 | 19..158 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 03:54:42 Download gff for
BO12040.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 11210980..11211070 | 462..553 | 96 | -> | Minus |
| arm_2R | 11211350..11211652 | 159..461 | 100 | -> | Minus |
| arm_2R | 11211707..11211846 | 19..158 | 100 | | Minus |
BO12040.5prime Sequence
557 bp (556 high quality bases) assembled on 2006-04-18
> BO12040.5prime
GAAGTTATCAGTCGACATGGGAAAGTTACTATCAAAAATTTTCGGCAACA
AGGAAATGCGAATTCTCATGCTCGGACTGGACGCGGCTGGAAAAACAACG
ATTCTGTACAAACTGAAACTTGGCCAATCTGTTACAACGATACCCACTGT
GGGCTTTAATGTGGAAACCGTCACCTATAAGAATGTCAAGTTCAATGTGT
GGGACGTCGGTGGGCAGGATAAGATTCGACCGCTATGGCGACACTATTAC
ACGGGTACACAGGGTCTGATCTTCGTCGTGGATTGTGCGGATCGGGATCG
GATAGACGAGGCGCGCACGGAGCTGCATAGGATAATTAACGATAGGGAGA
TGCGCGACGCCATCATACTGATATTTGCTAACAAGCAGGATCTGCCTGAT
GCAATGAAACCCCATGAAATCCAGGAAAAACTAGGTTTAACTAGAATAAG
AGATCGCAATTGGTATGTACAACCATCATGTGCCACATCCGGCGATGGCC
TGTCCGAGGGCCTCATTTGGTTAACGTCGAACCATAAGTTAGCAAGCTTT
CTAGACC
BO12040.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:35:50
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG8156-PD | 528 | Arf51F-RD | 1..525 | 17..541 | 2625 | 100 | Plus |
| CG8156-PB | 528 | Arf51F-RB | 1..525 | 17..541 | 2625 | 100 | Plus |
| CG8156-PC | 528 | Arf51F-RC | 1..525 | 17..541 | 2625 | 100 | Plus |
| CG8156-PA | 528 | Arf51F-RA | 1..525 | 17..541 | 2625 | 100 | Plus |
| CG8156-PE | 528 | Arf51F-RE | 1..525 | 17..541 | 2625 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 21:54:59
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Arf51F-RE | 1357 | CG8156-RE | 281..806 | 16..541 | 2630 | 100 | Plus |
| Arf51F-RA | 1352 | CG8156-RA | 276..801 | 16..541 | 2630 | 100 | Plus |
| Arf51F-RC | 1370 | CG8156-RC | 294..819 | 16..541 | 2630 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 21:54:56
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 15323841..15324147 | 95..401 | 1520 | 99.7 | Plus |
| 2R | 25286936 | 2R | 15324201..15324341 | 401..541 | 705 | 100 | Plus |
| 2R | 25286936 | 2R | 15323483..15323565 | 16..98 | 415 | 100 | Plus |
| 3L | 28110227 | 3L | 22869850..22869953 | 144..41 | 220 | 80.8 | Minus |
| 4 | 1348131 | 4 | 1124442..1124648 | 78..284 | 210 | 73.4 | Plus |
Blast to na_te.dros performed on 2015-02-11 21:54:57 has no hits.
BO12040.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:24:11 Download gff for
BO12040.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8156-PA | 1..528 | 17..544 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 04:55:01 Download gff for
BO12040.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8156-PE | 1..528 | 17..544 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-27 20:28:41 Download gff for
BO12040.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Arf51F-RC | 286..819 | 7..541 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 00:42:55 Download gff for
BO12040.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Arf51F-RC | 286..819 | 7..541 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 00:42:55 Download gff for
BO12040.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 15323475..15323565 | 7..98 | 96 | -> | Plus |
| 2R | 15323845..15324147 | 99..401 | 100 | -> | Plus |
| 2R | 15324202..15324341 | 402..541 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-27 20:28:41 Download gff for
BO12040.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 11210980..11211070 | 7..98 | 96 | -> | Plus |
| arm_2R | 11211350..11211652 | 99..401 | 100 | -> | Plus |
| arm_2R | 11211707..11211846 | 402..541 | 100 | | Plus |
BO12040.complete Sequence
559 bp assembled on 2006-10-11
GenBank Submission: FJ632290
> BO12040.complete
GAAGTTATCAGTCGACATGGGAAAGTTACTATCAAAAATTTTCGGCAACA
AGGAAATGCGAATTCTCATGCTCGGACTGGACGCGGCTGGAAAAACAACG
ATTCTGTACAAACTGAAACTTGGCCAATCTGTTACAACGATACCCACTGT
GGGCTTTAATGTGGAAACCGTCACCTATAAGAATGTCAAGTTCAATGTGT
GGGACGTCGGTGGGCAGGATAAGATTCGACCGCTATGGCGACACTATTAC
ACGGGTACACAGGGTCTGATCTTCGTCGTGGATTGTGCGGATCGGGATCG
GATAGACGAGGCGCGCACGGAGCTGCATAGGATAATTAACGATAGGGAGA
TGCGCGACGCCATCATACTGATATTTGCTAACAAGCAGGATCTGCCTGAT
GCAATGAAACCCCATGAAATCCAGGAAAAACTAGGTTTAACTAGAATAAG
AGATCGCAATTGGTATGTACAACCATCATGTGCCACATCCGGCGATGGCC
TGTCCGAGGGCCTCATTTGGTTAACGTCGAACCATAAGTTAGCAAGCTTT
CTAGACCAT
BO12040.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 07:38:05
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Arf51F-RE | 528 | CG8156-PE | 1..525 | 17..541 | 2625 | 100 | Plus |
| Arf51F-RA | 528 | CG8156-PA | 1..525 | 17..541 | 2625 | 100 | Plus |
| Arf51F-RC | 528 | CG8156-PC | 1..525 | 17..541 | 2625 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 07:38:06
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Arf51F-RE | 1357 | CG8156-RE | 281..806 | 16..541 | 2630 | 100 | Plus |
| Arf51F-RA | 1352 | CG8156-RA | 276..801 | 16..541 | 2630 | 100 | Plus |
| Arf51F-RC | 1370 | CG8156-RC | 294..819 | 16..541 | 2630 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 07:38:02
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 15323841..15324147 | 95..401 | 1520 | 99.7 | Plus |
| 2R | 25286936 | 2R | 15324201..15324341 | 401..541 | 705 | 100 | Plus |
| 2R | 25286936 | 2R | 15323483..15323565 | 16..98 | 415 | 100 | Plus |
| 3L | 28110227 | 3L | 22869850..22869953 | 144..41 | 220 | 80.8 | Minus |
| 4 | 1348131 | 4 | 1124442..1124648 | 78..284 | 210 | 73.4 | Plus |
Blast to na_te.dros performed on 2014-11-27 07:38:03 has no hits.
BO12040.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:08:45 Download gff for
BO12040.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Arf51F-RC | 1..528 | 17..544 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:25:34 Download gff for
BO12040.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Arf51F-RD | 284..817 | 7..541 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 05:19:24 Download gff for
BO12040.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Arf51F-RC | 295..819 | 17..543 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:08:45 Download gff for
BO12040.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Arf51F-RD | 284..817 | 7..541 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 08:14:19 Download gff for
BO12040.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Arf51F-RC | 295..819 | 17..543 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 08:14:19 Download gff for
BO12040.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 15323484..15323565 | 17..98 | 100 | -> | Plus |
| 2R | 15323845..15324147 | 99..401 | 100 | -> | Plus |
| 2R | 15324202..15324341 | 402..543 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 05:19:24 Download gff for
BO12040.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 11210989..11211070 | 17..98 | 100 | -> | Plus |
| arm_2R | 11211350..11211652 | 99..401 | 100 | -> | Plus |
| arm_2R | 11211707..11211846 | 402..543 | 98 | | Plus |
BO12040.pep Sequence
Translation from 16 to 559
> BO12040.pep
MGKLLSKIFGNKEMRILMLGLDAAGKTTILYKLKLGQSVTTIPTVGFNVE
TVTYKNVKFNVWDVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEAR
TELHRIINDREMRDAIILIFANKQDLPDAMKPHEIQEKLGLTRIRDRNWY
VQPSCATSGDGLSEGLIWLTSNHKLASFLDH
BO12040.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 00:21:41
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Arf51F-PE | 175 | CG8156-PE | 1..175 | 1..175 | 921 | 100 | Plus |
| Arf51F-PA | 175 | CG8156-PA | 1..175 | 1..175 | 921 | 100 | Plus |
| Arf51F-PC | 175 | CG8156-PC | 1..175 | 1..175 | 921 | 100 | Plus |
| Arf51F-PB | 175 | CG8156-PB | 1..175 | 1..175 | 921 | 100 | Plus |
| Arf51F-PD | 175 | CG8156-PD | 1..175 | 1..175 | 921 | 100 | Plus |
