Clone BO12041 Report

Search the DGRC for BO12041

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:120
Well:41
Vector:pDNR-Dual
Associated Gene/TranscriptCG1091-RB
Protein status:BO12041.pep:
Sequenced Size:1714

Clone Sequence Records

BO12041.3prime Sequence

885 bp (763 high quality bases) assembled on 2006-04-20

> BO12041.3prime
ATGGTCTAGAAAGCTTGCAAATGCATAGCGCTGACGCCAATTGGTGGAAG
GTTCCTCAAGCAGCTCCGCCGTCTGCTGGCAGTAGTCAACGAACGTCTGC
AGTCCATATTTGGTCACCGCTTTCGTTACATTGTGGTTTAGTTGTATGGG
ATCCTGTACCACCATCGGTTTTTTCAGCTGGATCGAGCATTCAGGGTTGT
CCGACACATATGCTGAATACCTAGCATGCAGCATCCTCTCAATCTTCGCG
ATTTCAACATTAGCCTGACCTATATATGGGCAGACCAAGAAATGCTCGTA
GTCAAATTTGGCGAAATACGCAAAGAAGTTTCGAAGGAAGCCCTTGATGA
CGGGGACGGTCGCCTTTAATTGCTGCAGTCCCAGTTCGCTAAACGATTTT
TGTGCAAAGTTGACAACCCACGGACCCACGAGCACGGCCTGATTGGCTGC
ATCCTCTATCTGCAGCATGGCAATGGGGGGCAGCAGGGCCTGGAGCTGCA
GGAAGTAAATCACCATCAGTGTAATGCTGTACGTCGATATTTGTTCAGTT
AGCTTGCAGCGCTCCAGCCAGTTCTTTACATATATGCACATATATTGAGT
CAGTGGCTGTGACTCAAATATGTATTTGAGCAGATTTGTATTGCAAAAGC
CCATGCTGTTCAGACAAATGTCGCACTCGATACCGGTTGGTAAGTGGCAC
GTCTTGATGATGGGCACGCGAGCCTGTTCGATGAAATTAATAAGACGCCA
GTCCTCGCTGTCGCAGAAGAACTTCCTCATAGCCCGCAGCTTGGCGACGG
TAGCGTTGGAAGCTCGATGCTCGAACGTGTGAAATGTGTTGCCGATGTCG
ACGAAAAGGTCCAGGTCCGAGGATCGATTTCCAAT

BO12041.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:35:51
Subject Length Description Subject Range Query Range Score Percent Strand
CG1091-PB 1683 CG1091-RB 814..1680 885..19 4310 99.8 Minus
CG1091-PA 1518 CG1091-RA 649..1515 885..19 4310 99.8 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 16:18:14
Subject Length Description Subject Range Query Range Score Percent Strand
CG1091-RA 1792 CG1091-RA 766..1632 885..19 4320 99.9 Minus
CG1091-RB 1943 CG1091-RB 917..1783 885..19 4320 99.9 Minus
CG1091-RC 1952 CG1091-RC 917..1792 885..19 4220 98.9 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 16:18:06
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 7083385..7083590 19..224 1030 100 Plus
3R 32079331 3R 7083688..7083891 219..422 1020 100 Plus
3R 32079331 3R 7083948..7084124 423..599 885 100 Plus
3R 32079331 3R 7084183..7084318 600..735 680 100 Plus
3R 32079331 3R 7084375..7084482 736..843 540 100 Plus
3R 32079331 3R 7084542..7084585 842..885 205 97.7 Plus
Blast to na_te.dros performed on 2015-02-10 16:18:10 has no hits.

BO12041.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:24:12 Download gff for BO12041.3prime
Subject Subject Range Query Range Percent Splice Strand
CG1091-PA 649..1518 15..885 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 04:55:03 Download gff for BO12041.3prime
Subject Subject Range Query Range Percent Splice Strand
CG1091-PA 649..1518 15..885 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-20 02:28:41 Download gff for BO12041.3prime
Subject Subject Range Query Range Percent Splice Strand
CG1091-RB 917..1788 14..885 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:46:01 Download gff for BO12041.3prime
Subject Subject Range Query Range Percent Splice Strand
CG1091-RB 917..1788 14..885 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:46:01 Download gff for BO12041.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 7083380..7083586 14..220 99 <- Plus
3R 7083690..7083891 221..422 100 <- Plus
3R 7083948..7084124 423..599 100 <- Plus
3R 7084183..7084318 600..735 100 <- Plus
3R 7084375..7084481 736..842 100 <- Plus
3R 7084543..7084585 843..885 97   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-20 02:28:41 Download gff for BO12041.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 2909905..2910040 600..735 100 <- Plus
arm_3R 2909412..2909613 221..422 100 <- Plus
arm_3R 2909670..2909846 423..599 100 <- Plus
arm_3R 2909102..2909308 14..220 99 <- Plus
arm_3R 2910097..2910203 736..842 100 <- Plus
arm_3R 2910265..2910307 843..885 97   Plus

BO12041.5prime Sequence

775 bp (772 high quality bases) assembled on 2006-04-18

> BO12041.5prime
GAAGTTATCAGTCGACATGCGGATCGAACCTGGGGACTCCTTTTGGACGA
AAAAGGCGATGTTTTCCAACGCAGAAAGGCAGTACTTTGAGACGGTCCGT
CCGCGGAAGACCAGTCTTCCGGGCTCCACCGCGCCCAACATAGCCGCTCC
GGTAACAAAGGCCACGAAGAAGAATAAGACGATGGCCGAGATGATGCCAA
ACAAACTGCTTTACATGAATCCGCTTACCATGGAGGCACACTTCTTTCTG
CAGACCCTAAACTCAGTGAACCAGACGACGAATCCGCCGCAGCTAGACCC
GCACCTGGCCAACCTGCTGGAGCGCATTATGGTGGGCATCGAGAGCTACT
TGGACAGGAATCCCACATACGTTTTGCCGCAGGAGATGGCCGCACCGGGT
GAGGGCGTGGCCTTCGTCCAGCCCCAGGAGCTGCAGACAATAAAGCGAAC
ATTCAGCTGTAGTTCCTGCAGCAACCGCATAGTGGGCACCACCATCGCAA
AAGCTGTGGCCCACCTTTCGGAGCAGCATCCAAAACCCAATCCCAACAAT
CAGCCAGTCCAGCCGCATCCGACGCATCAGACGAAACAGGAGAAAAAGCA
GGCCCAGGTGAAGGCTCGTCAGCATATAACAGTACGGCTACCCAAGAAGG
CCAGGGCAATGATTGTGGGAGAGATTACGAATGTGTTTAAGGACAAATAC
CCAATAGCGGACAAGTTAAAGGTGATTCCCGAGTACGACGTTATCGAACA
GGACCTGTGCAAGCTTTTGTCGCCG

BO12041.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:35:52
Subject Length Description Subject Range Query Range Score Percent Strand
CG1091-PB 1683 CG1091-RB 1..759 17..775 3795 100 Plus
CG1091-PA 1518 CG1091-RA 1..594 182..775 2970 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 07:26:55
Subject Length Description Subject Range Query Range Score Percent Strand
CG1091-RC 1952 CG1091-RC 103..862 16..775 3800 100 Plus
CG1091-RB 1943 CG1091-RB 103..862 16..775 3800 100 Plus
CG1091-RA 1792 CG1091-RA 52..711 116..775 3300 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 07:26:48
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 7084925..7085357 647..215 2165 100 Minus
3R 32079331 3R 7084640..7084767 775..648 640 100 Minus
3R 32079331 3R 7085410..7085512 218..116 500 99 Minus
3R 32079331 3R 7085882..7085981 115..16 500 100 Minus
Blast to na_te.dros performed on 2015-02-10 07:26:51 has no hits.

BO12041.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:24:14 Download gff for BO12041.5prime
Subject Subject Range Query Range Percent Splice Strand
CG1091-PB 1..759 17..775 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 04:55:04 Download gff for BO12041.5prime
Subject Subject Range Query Range Percent Splice Strand
CG1091-PB 1..759 17..775 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-13 09:32:17 Download gff for BO12041.5prime
Subject Subject Range Query Range Percent Splice Strand
CG1091-RB 97..862 9..775 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 10:50:07 Download gff for BO12041.5prime
Subject Subject Range Query Range Percent Splice Strand
CG1091-RB 97..862 9..775 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 10:50:07 Download gff for BO12041.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 7084640..7084767 648..775 100 <- Minus
3R 7084925..7085357 215..647 100 <- Minus
3R 7085414..7085512 116..214 100 <- Minus
3R 7085882..7085987 9..115 97   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-13 09:32:17 Download gff for BO12041.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 2910362..2910489 648..775 100 <- Minus
arm_3R 2910647..2911079 215..647 100 <- Minus
arm_3R 2911136..2911234 116..214 100 <- Minus
arm_3R 2911604..2911709 9..115 97   Minus

BO12041.complete Sequence

1714 bp assembled on 2008-01-17

GenBank Submission: FJ638693

> BO12041.complete
GAAGTTATCAGTCGACATGCGGATCGAACCTGGGGACTCCTTTTGGACGA
AAAAGGCGATGTTTTCCAACGCAGAAAGGCAGTACTTTGAGACGGTCCGT
CCGCGGAAGACCAGTCTTCCGGGCTCCACCGCGCCCAACATAGCCGCTCC
GGTAACAAAGGCCACGAAGAAGAATAAGACGATGGCCGAGATGATGCCAA
ACAAACTGCTTTACATGAATCCGCTTACCATGGAGGCACACTTCTTTCTG
CAGACCCTAAACTCAGTGAACCAGACGACGAATCCGCCGCAGCTAGACCC
GCACCTGGCCAACCTGCTGGAGCGCATTATGGTGGGCATCGAGAGCTACT
TGGACAGGAATCCCACATACGTTTTGCCGCAGGAGATGGCCGCACCGGGT
GAGGGCGTGGCCTTCGTCCAGCCCCAGGAGCTGCAGACAATAAAGCGAAC
ATTCAGCTGTAGTTCCTGCAGCAACCGCATAGTGGGCACCACCATCGCAA
AAGCTGTGGCCCACCTTTCGGAGCAGCATCCAAAACCCAATCCCAACAAT
CAGCCAGTCCAGCCGCATCCGACGCATCAGACGAAACAGGAGAAAAAGCA
GGCCCAGGTGAAGGCTCGTCAGCATATAACAGTACGGCTACCCAAGAAGG
CCAGGGCAATGATTGTGGGAGAGATTACGAATGTGTTTAAGGACAAATAC
CCAATAGCGGACAAGTTAAAGGTGATTCCCGAGTACGACGTTATCGAACA
GGACCTGTGCAAGCTTTTGTCGCCGGGCTTTCCCAAACAACCACTGCGAG
TCTACAAGTTCGGGTCCCGCATCACAGGCATTGGAAATCGATCCTCGGAC
CTGGACCTCTTCGTCGACATCGGCAACACATTTCACACGTTCGAGCATCG
AGCTTCCAACGCTACCGTCGCCAAGCTGCGGGCTATGAGGAAGTTCTTCT
GCGACAGCGAGGACTGGCGTCTTATTAATTTCATCGAACAGGCTCGCGTG
CCCATCATCAAGACGTGCCACTTACCAACCGGTATCGAGTGCGACATTTG
TCTGAACAGCATGGGCTTTTGCAATACAAATCTGCTCAAATACATATTTG
AGTCACAGCCACTGACTCAATATATGTGCATATATGTAAAGAACTGGCTG
GAGCGCTGCAAGCTAACTGAACAAATATCGACGTACAGCATTACACTGAT
GGTGATTTACTTCCTGCAGCTCCAGGCCCTGCTGCCCCCCATTGCCATGC
TGCAGATAGAGGATGCAGCCAATCAGGCCGTGCTCGTGGGTCCGTGGGTT
GTCAACTTTGCACAAAAATCGTTTAGCGAACTGGGACTGCAGCAATTAAA
GGCGACCGTCCCCGTCATCAAGGGCTTCCTTCGAAACTTCTTTGCGTATT
TCGCCAAATTTGACTACGAGCATTTCTTGGTCTGCCCATATATAGGTCAG
GCTAATGTTGAAATCGCGAAGATTGAGAGGATGCTGCATGCTAGGTATTC
AGCATATGTGTCGGACAACCCTGAATGCTCGATCCAGCTGAAAAAACCGA
TGGTGGTACAGGATCCCATACAACTAAACCACAATGTAACGAAAGCGGTG
ACCAAATATGGACTGCAGACGTTCGTTGACTACTGCCAGCAGACGGCGGA
GCTGCTTGAGGAACCTTCCACCAATTGGCGTCAGCGCTATGCATTTGCAA
GCTTTCTAGACCAT

BO12041.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 15:01:17
Subject Length Description Subject Range Query Range Score Percent Strand
CG1091-RB 1683 CG1091-PB 1..1680 17..1696 8400 100 Plus
CG1091-RC 1692 CG1091-PC 1..1689 17..1696 8275 99.5 Plus
CG1091-RA 1518 CG1091-PA 1..1515 182..1696 7575 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:01:18
Subject Length Description Subject Range Query Range Score Percent Strand
CG1091-RB 1943 CG1091-RB 103..1783 16..1696 8405 100 Plus
CG1091-RC 1952 CG1091-RC 103..1792 16..1696 8280 99.5 Plus
CG1091-RA 1792 CG1091-RA 52..1632 116..1696 7905 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 15:01:13
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 7084925..7085357 647..215 2165 100 Minus
3R 32079331 3R 7084542..7084767 873..648 1130 100 Minus
3R 32079331 3R 7083385..7083590 1696..1491 1030 100 Minus
3R 32079331 3R 7083688..7083891 1496..1293 1020 100 Minus
3R 32079331 3R 7083948..7084124 1292..1116 885 100 Minus
3R 32079331 3R 7084183..7084318 1115..980 680 100 Minus
3R 32079331 3R 7084375..7084482 979..872 540 100 Minus
3R 32079331 3R 7085410..7085512 218..116 500 99 Minus
3R 32079331 3R 7085882..7085981 115..16 500 100 Minus
Blast to na_te.dros performed on 2014-11-27 15:01:16 has no hits.

BO12041.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 13:59:42 Download gff for BO12041.complete
Subject Subject Range Query Range Percent Splice Strand
CG1091-RB 1..1683 17..1700 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-07-28 15:35:56 Download gff for BO12041.complete
Subject Subject Range Query Range Percent Splice Strand
CG1091-RB 110..1789 17..1698 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:36:08 Download gff for BO12041.complete
Subject Subject Range Query Range Percent Splice Strand
CG1091-RB 104..1783 17..1698 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 13:59:42 Download gff for BO12041.complete
Subject Subject Range Query Range Percent Splice Strand
CG1091-RB 103..1794 9..1701 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:58:04 Download gff for BO12041.complete
Subject Subject Range Query Range Percent Splice Strand
CG1091-RB 104..1783 17..1698 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 15:58:04 Download gff for BO12041.complete
Subject Subject Range Query Range Percent Splice Strand
3R 7083383..7083586 1495..1698 99 <- Minus
3R 7083690..7083891 1293..1494 100 <- Minus
3R 7083948..7084124 1116..1292 100 <- Minus
3R 7084183..7084318 980..1115 100 <- Minus
3R 7084375..7084481 873..979 100 <- Minus
3R 7084543..7084767 648..872 100 <- Minus
3R 7084925..7085357 215..647 100 <- Minus
3R 7085414..7085512 116..214 100 <- Minus
3R 7085882..7085980 17..115 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:36:08 Download gff for BO12041.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 2911136..2911234 116..214 100 <- Minus
arm_3R 2911604..2911702 17..115 100   Minus
arm_3R 2909105..2909308 1495..1698 99 <- Minus
arm_3R 2909412..2909613 1293..1494 100 <- Minus
arm_3R 2909670..2909846 1116..1292 100 <- Minus
arm_3R 2909905..2910040 980..1115 100 <- Minus
arm_3R 2910097..2910203 873..979 100 <- Minus
arm_3R 2910265..2910489 648..872 100 <- Minus
arm_3R 2910647..2911079 215..647 100 <- Minus

BO12041.pep Sequence

Translation from 16 to 1714

> BO12041.pep
MRIEPGDSFWTKKAMFSNAERQYFETVRPRKTSLPGSTAPNIAAPVTKAT
KKNKTMAEMMPNKLLYMNPLTMEAHFFLQTLNSVNQTTNPPQLDPHLANL
LERIMVGIESYLDRNPTYVLPQEMAAPGEGVAFVQPQELQTIKRTFSCSS
CSNRIVGTTIAKAVAHLSEQHPKPNPNNQPVQPHPTHQTKQEKKQAQVKA
RQHITVRLPKKARAMIVGEITNVFKDKYPIADKLKVIPEYDVIEQDLCKL
LSPGFPKQPLRVYKFGSRITGIGNRSSDLDLFVDIGNTFHTFEHRASNAT
VAKLRAMRKFFCDSEDWRLINFIEQARVPIIKTCHLPTGIECDICLNSMG
FCNTNLLKYIFESQPLTQYMCIYVKNWLERCKLTEQISTYSITLMVIYFL
QLQALLPPIAMLQIEDAANQAVLVGPWVVNFAQKSFSELGLQQLKATVPV
IKGFLRNFFAYFAKFDYEHFLVCPYIGQANVEIAKIERMLHARYSAYVSD
NPECSIQLKKPMVVQDPIQLNHNVTKAVTKYGLQTFVDYCQQTAELLEEP
STNWRQRYAFASFLDH

BO12041.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 02:26:54
Subject Length Description Subject Range Query Range Score Percent Strand
CG1091-PB 560 CG1091-PB 1..560 1..560 2946 100 Plus
CG1091-PC 563 CG1091-PC 1..563 1..560 2932 99.5 Plus
CG1091-PA 505 CG1091-PA 1..505 56..560 2659 100 Plus
mkg-p-PD 659 CG7163-PD 120..384 260..529 222 27.1 Plus
mkg-p-PB 659 CG7163-PB 120..384 260..529 222 27.1 Plus