Clone Sequence Records
BO12041.3prime Sequence
885 bp (763 high quality bases) assembled on 2006-04-20
> BO12041.3prime
ATGGTCTAGAAAGCTTGCAAATGCATAGCGCTGACGCCAATTGGTGGAAG
GTTCCTCAAGCAGCTCCGCCGTCTGCTGGCAGTAGTCAACGAACGTCTGC
AGTCCATATTTGGTCACCGCTTTCGTTACATTGTGGTTTAGTTGTATGGG
ATCCTGTACCACCATCGGTTTTTTCAGCTGGATCGAGCATTCAGGGTTGT
CCGACACATATGCTGAATACCTAGCATGCAGCATCCTCTCAATCTTCGCG
ATTTCAACATTAGCCTGACCTATATATGGGCAGACCAAGAAATGCTCGTA
GTCAAATTTGGCGAAATACGCAAAGAAGTTTCGAAGGAAGCCCTTGATGA
CGGGGACGGTCGCCTTTAATTGCTGCAGTCCCAGTTCGCTAAACGATTTT
TGTGCAAAGTTGACAACCCACGGACCCACGAGCACGGCCTGATTGGCTGC
ATCCTCTATCTGCAGCATGGCAATGGGGGGCAGCAGGGCCTGGAGCTGCA
GGAAGTAAATCACCATCAGTGTAATGCTGTACGTCGATATTTGTTCAGTT
AGCTTGCAGCGCTCCAGCCAGTTCTTTACATATATGCACATATATTGAGT
CAGTGGCTGTGACTCAAATATGTATTTGAGCAGATTTGTATTGCAAAAGC
CCATGCTGTTCAGACAAATGTCGCACTCGATACCGGTTGGTAAGTGGCAC
GTCTTGATGATGGGCACGCGAGCCTGTTCGATGAAATTAATAAGACGCCA
GTCCTCGCTGTCGCAGAAGAACTTCCTCATAGCCCGCAGCTTGGCGACGG
TAGCGTTGGAAGCTCGATGCTCGAACGTGTGAAATGTGTTGCCGATGTCG
ACGAAAAGGTCCAGGTCCGAGGATCGATTTCCAAT
BO12041.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:35:51
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG1091-PB | 1683 | CG1091-RB | 814..1680 | 885..19 | 4310 | 99.8 | Minus |
CG1091-PA | 1518 | CG1091-RA | 649..1515 | 885..19 | 4310 | 99.8 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 16:18:14
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG1091-RA | 1792 | CG1091-RA | 766..1632 | 885..19 | 4320 | 99.9 | Minus |
CG1091-RB | 1943 | CG1091-RB | 917..1783 | 885..19 | 4320 | 99.9 | Minus |
CG1091-RC | 1952 | CG1091-RC | 917..1792 | 885..19 | 4220 | 98.9 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 16:18:06
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 7083385..7083590 | 19..224 | 1030 | 100 | Plus |
3R | 32079331 | 3R | 7083688..7083891 | 219..422 | 1020 | 100 | Plus |
3R | 32079331 | 3R | 7083948..7084124 | 423..599 | 885 | 100 | Plus |
3R | 32079331 | 3R | 7084183..7084318 | 600..735 | 680 | 100 | Plus |
3R | 32079331 | 3R | 7084375..7084482 | 736..843 | 540 | 100 | Plus |
3R | 32079331 | 3R | 7084542..7084585 | 842..885 | 205 | 97.7 | Plus |
Blast to na_te.dros performed on 2015-02-10 16:18:10 has no hits.
BO12041.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:24:12 Download gff for
BO12041.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1091-PA | 649..1518 | 15..885 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 04:55:03 Download gff for
BO12041.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1091-PA | 649..1518 | 15..885 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-20 02:28:41 Download gff for
BO12041.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1091-RB | 917..1788 | 14..885 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:46:01 Download gff for
BO12041.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1091-RB | 917..1788 | 14..885 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:46:01 Download gff for
BO12041.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 7083380..7083586 | 14..220 | 99 | <- | Plus |
3R | 7083690..7083891 | 221..422 | 100 | <- | Plus |
3R | 7083948..7084124 | 423..599 | 100 | <- | Plus |
3R | 7084183..7084318 | 600..735 | 100 | <- | Plus |
3R | 7084375..7084481 | 736..842 | 100 | <- | Plus |
3R | 7084543..7084585 | 843..885 | 97 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-20 02:28:41 Download gff for
BO12041.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 2909905..2910040 | 600..735 | 100 | <- | Plus |
arm_3R | 2909412..2909613 | 221..422 | 100 | <- | Plus |
arm_3R | 2909670..2909846 | 423..599 | 100 | <- | Plus |
arm_3R | 2909102..2909308 | 14..220 | 99 | <- | Plus |
arm_3R | 2910097..2910203 | 736..842 | 100 | <- | Plus |
arm_3R | 2910265..2910307 | 843..885 | 97 | | Plus |
BO12041.5prime Sequence
775 bp (772 high quality bases) assembled on 2006-04-18
> BO12041.5prime
GAAGTTATCAGTCGACATGCGGATCGAACCTGGGGACTCCTTTTGGACGA
AAAAGGCGATGTTTTCCAACGCAGAAAGGCAGTACTTTGAGACGGTCCGT
CCGCGGAAGACCAGTCTTCCGGGCTCCACCGCGCCCAACATAGCCGCTCC
GGTAACAAAGGCCACGAAGAAGAATAAGACGATGGCCGAGATGATGCCAA
ACAAACTGCTTTACATGAATCCGCTTACCATGGAGGCACACTTCTTTCTG
CAGACCCTAAACTCAGTGAACCAGACGACGAATCCGCCGCAGCTAGACCC
GCACCTGGCCAACCTGCTGGAGCGCATTATGGTGGGCATCGAGAGCTACT
TGGACAGGAATCCCACATACGTTTTGCCGCAGGAGATGGCCGCACCGGGT
GAGGGCGTGGCCTTCGTCCAGCCCCAGGAGCTGCAGACAATAAAGCGAAC
ATTCAGCTGTAGTTCCTGCAGCAACCGCATAGTGGGCACCACCATCGCAA
AAGCTGTGGCCCACCTTTCGGAGCAGCATCCAAAACCCAATCCCAACAAT
CAGCCAGTCCAGCCGCATCCGACGCATCAGACGAAACAGGAGAAAAAGCA
GGCCCAGGTGAAGGCTCGTCAGCATATAACAGTACGGCTACCCAAGAAGG
CCAGGGCAATGATTGTGGGAGAGATTACGAATGTGTTTAAGGACAAATAC
CCAATAGCGGACAAGTTAAAGGTGATTCCCGAGTACGACGTTATCGAACA
GGACCTGTGCAAGCTTTTGTCGCCG
BO12041.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:35:52
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG1091-PB | 1683 | CG1091-RB | 1..759 | 17..775 | 3795 | 100 | Plus |
CG1091-PA | 1518 | CG1091-RA | 1..594 | 182..775 | 2970 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 07:26:55
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG1091-RC | 1952 | CG1091-RC | 103..862 | 16..775 | 3800 | 100 | Plus |
CG1091-RB | 1943 | CG1091-RB | 103..862 | 16..775 | 3800 | 100 | Plus |
CG1091-RA | 1792 | CG1091-RA | 52..711 | 116..775 | 3300 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 07:26:48
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 7084925..7085357 | 647..215 | 2165 | 100 | Minus |
3R | 32079331 | 3R | 7084640..7084767 | 775..648 | 640 | 100 | Minus |
3R | 32079331 | 3R | 7085410..7085512 | 218..116 | 500 | 99 | Minus |
3R | 32079331 | 3R | 7085882..7085981 | 115..16 | 500 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-10 07:26:51 has no hits.
BO12041.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:24:14 Download gff for
BO12041.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1091-PB | 1..759 | 17..775 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 04:55:04 Download gff for
BO12041.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1091-PB | 1..759 | 17..775 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-13 09:32:17 Download gff for
BO12041.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1091-RB | 97..862 | 9..775 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 10:50:07 Download gff for
BO12041.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1091-RB | 97..862 | 9..775 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 10:50:07 Download gff for
BO12041.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 7084640..7084767 | 648..775 | 100 | <- | Minus |
3R | 7084925..7085357 | 215..647 | 100 | <- | Minus |
3R | 7085414..7085512 | 116..214 | 100 | <- | Minus |
3R | 7085882..7085987 | 9..115 | 97 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-13 09:32:17 Download gff for
BO12041.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 2910362..2910489 | 648..775 | 100 | <- | Minus |
arm_3R | 2910647..2911079 | 215..647 | 100 | <- | Minus |
arm_3R | 2911136..2911234 | 116..214 | 100 | <- | Minus |
arm_3R | 2911604..2911709 | 9..115 | 97 | | Minus |
BO12041.complete Sequence
1714 bp assembled on 2008-01-17
GenBank Submission: FJ638693
> BO12041.complete
GAAGTTATCAGTCGACATGCGGATCGAACCTGGGGACTCCTTTTGGACGA
AAAAGGCGATGTTTTCCAACGCAGAAAGGCAGTACTTTGAGACGGTCCGT
CCGCGGAAGACCAGTCTTCCGGGCTCCACCGCGCCCAACATAGCCGCTCC
GGTAACAAAGGCCACGAAGAAGAATAAGACGATGGCCGAGATGATGCCAA
ACAAACTGCTTTACATGAATCCGCTTACCATGGAGGCACACTTCTTTCTG
CAGACCCTAAACTCAGTGAACCAGACGACGAATCCGCCGCAGCTAGACCC
GCACCTGGCCAACCTGCTGGAGCGCATTATGGTGGGCATCGAGAGCTACT
TGGACAGGAATCCCACATACGTTTTGCCGCAGGAGATGGCCGCACCGGGT
GAGGGCGTGGCCTTCGTCCAGCCCCAGGAGCTGCAGACAATAAAGCGAAC
ATTCAGCTGTAGTTCCTGCAGCAACCGCATAGTGGGCACCACCATCGCAA
AAGCTGTGGCCCACCTTTCGGAGCAGCATCCAAAACCCAATCCCAACAAT
CAGCCAGTCCAGCCGCATCCGACGCATCAGACGAAACAGGAGAAAAAGCA
GGCCCAGGTGAAGGCTCGTCAGCATATAACAGTACGGCTACCCAAGAAGG
CCAGGGCAATGATTGTGGGAGAGATTACGAATGTGTTTAAGGACAAATAC
CCAATAGCGGACAAGTTAAAGGTGATTCCCGAGTACGACGTTATCGAACA
GGACCTGTGCAAGCTTTTGTCGCCGGGCTTTCCCAAACAACCACTGCGAG
TCTACAAGTTCGGGTCCCGCATCACAGGCATTGGAAATCGATCCTCGGAC
CTGGACCTCTTCGTCGACATCGGCAACACATTTCACACGTTCGAGCATCG
AGCTTCCAACGCTACCGTCGCCAAGCTGCGGGCTATGAGGAAGTTCTTCT
GCGACAGCGAGGACTGGCGTCTTATTAATTTCATCGAACAGGCTCGCGTG
CCCATCATCAAGACGTGCCACTTACCAACCGGTATCGAGTGCGACATTTG
TCTGAACAGCATGGGCTTTTGCAATACAAATCTGCTCAAATACATATTTG
AGTCACAGCCACTGACTCAATATATGTGCATATATGTAAAGAACTGGCTG
GAGCGCTGCAAGCTAACTGAACAAATATCGACGTACAGCATTACACTGAT
GGTGATTTACTTCCTGCAGCTCCAGGCCCTGCTGCCCCCCATTGCCATGC
TGCAGATAGAGGATGCAGCCAATCAGGCCGTGCTCGTGGGTCCGTGGGTT
GTCAACTTTGCACAAAAATCGTTTAGCGAACTGGGACTGCAGCAATTAAA
GGCGACCGTCCCCGTCATCAAGGGCTTCCTTCGAAACTTCTTTGCGTATT
TCGCCAAATTTGACTACGAGCATTTCTTGGTCTGCCCATATATAGGTCAG
GCTAATGTTGAAATCGCGAAGATTGAGAGGATGCTGCATGCTAGGTATTC
AGCATATGTGTCGGACAACCCTGAATGCTCGATCCAGCTGAAAAAACCGA
TGGTGGTACAGGATCCCATACAACTAAACCACAATGTAACGAAAGCGGTG
ACCAAATATGGACTGCAGACGTTCGTTGACTACTGCCAGCAGACGGCGGA
GCTGCTTGAGGAACCTTCCACCAATTGGCGTCAGCGCTATGCATTTGCAA
GCTTTCTAGACCAT
BO12041.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 15:01:17
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG1091-RB | 1683 | CG1091-PB | 1..1680 | 17..1696 | 8400 | 100 | Plus |
CG1091-RC | 1692 | CG1091-PC | 1..1689 | 17..1696 | 8275 | 99.5 | Plus |
CG1091-RA | 1518 | CG1091-PA | 1..1515 | 182..1696 | 7575 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:01:18
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG1091-RB | 1943 | CG1091-RB | 103..1783 | 16..1696 | 8405 | 100 | Plus |
CG1091-RC | 1952 | CG1091-RC | 103..1792 | 16..1696 | 8280 | 99.5 | Plus |
CG1091-RA | 1792 | CG1091-RA | 52..1632 | 116..1696 | 7905 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 15:01:13
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 7084925..7085357 | 647..215 | 2165 | 100 | Minus |
3R | 32079331 | 3R | 7084542..7084767 | 873..648 | 1130 | 100 | Minus |
3R | 32079331 | 3R | 7083385..7083590 | 1696..1491 | 1030 | 100 | Minus |
3R | 32079331 | 3R | 7083688..7083891 | 1496..1293 | 1020 | 100 | Minus |
3R | 32079331 | 3R | 7083948..7084124 | 1292..1116 | 885 | 100 | Minus |
3R | 32079331 | 3R | 7084183..7084318 | 1115..980 | 680 | 100 | Minus |
3R | 32079331 | 3R | 7084375..7084482 | 979..872 | 540 | 100 | Minus |
3R | 32079331 | 3R | 7085410..7085512 | 218..116 | 500 | 99 | Minus |
3R | 32079331 | 3R | 7085882..7085981 | 115..16 | 500 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 15:01:16 has no hits.
BO12041.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 13:59:42 Download gff for
BO12041.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1091-RB | 1..1683 | 17..1700 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-07-28 15:35:56 Download gff for
BO12041.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1091-RB | 110..1789 | 17..1698 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:36:08 Download gff for
BO12041.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1091-RB | 104..1783 | 17..1698 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 13:59:42 Download gff for
BO12041.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1091-RB | 103..1794 | 9..1701 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:58:04 Download gff for
BO12041.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1091-RB | 104..1783 | 17..1698 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 15:58:04 Download gff for
BO12041.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 7083383..7083586 | 1495..1698 | 99 | <- | Minus |
3R | 7083690..7083891 | 1293..1494 | 100 | <- | Minus |
3R | 7083948..7084124 | 1116..1292 | 100 | <- | Minus |
3R | 7084183..7084318 | 980..1115 | 100 | <- | Minus |
3R | 7084375..7084481 | 873..979 | 100 | <- | Minus |
3R | 7084543..7084767 | 648..872 | 100 | <- | Minus |
3R | 7084925..7085357 | 215..647 | 100 | <- | Minus |
3R | 7085414..7085512 | 116..214 | 100 | <- | Minus |
3R | 7085882..7085980 | 17..115 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:36:08 Download gff for
BO12041.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 2911136..2911234 | 116..214 | 100 | <- | Minus |
arm_3R | 2911604..2911702 | 17..115 | 100 | | Minus |
arm_3R | 2909105..2909308 | 1495..1698 | 99 | <- | Minus |
arm_3R | 2909412..2909613 | 1293..1494 | 100 | <- | Minus |
arm_3R | 2909670..2909846 | 1116..1292 | 100 | <- | Minus |
arm_3R | 2909905..2910040 | 980..1115 | 100 | <- | Minus |
arm_3R | 2910097..2910203 | 873..979 | 100 | <- | Minus |
arm_3R | 2910265..2910489 | 648..872 | 100 | <- | Minus |
arm_3R | 2910647..2911079 | 215..647 | 100 | <- | Minus |
BO12041.pep Sequence
Translation from 16 to 1714
> BO12041.pep
MRIEPGDSFWTKKAMFSNAERQYFETVRPRKTSLPGSTAPNIAAPVTKAT
KKNKTMAEMMPNKLLYMNPLTMEAHFFLQTLNSVNQTTNPPQLDPHLANL
LERIMVGIESYLDRNPTYVLPQEMAAPGEGVAFVQPQELQTIKRTFSCSS
CSNRIVGTTIAKAVAHLSEQHPKPNPNNQPVQPHPTHQTKQEKKQAQVKA
RQHITVRLPKKARAMIVGEITNVFKDKYPIADKLKVIPEYDVIEQDLCKL
LSPGFPKQPLRVYKFGSRITGIGNRSSDLDLFVDIGNTFHTFEHRASNAT
VAKLRAMRKFFCDSEDWRLINFIEQARVPIIKTCHLPTGIECDICLNSMG
FCNTNLLKYIFESQPLTQYMCIYVKNWLERCKLTEQISTYSITLMVIYFL
QLQALLPPIAMLQIEDAANQAVLVGPWVVNFAQKSFSELGLQQLKATVPV
IKGFLRNFFAYFAKFDYEHFLVCPYIGQANVEIAKIERMLHARYSAYVSD
NPECSIQLKKPMVVQDPIQLNHNVTKAVTKYGLQTFVDYCQQTAELLEEP
STNWRQRYAFASFLDH
BO12041.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 02:26:54
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG1091-PB | 560 | CG1091-PB | 1..560 | 1..560 | 2946 | 100 | Plus |
CG1091-PC | 563 | CG1091-PC | 1..563 | 1..560 | 2932 | 99.5 | Plus |
CG1091-PA | 505 | CG1091-PA | 1..505 | 56..560 | 2659 | 100 | Plus |
mkg-p-PD | 659 | CG7163-PD | 120..384 | 260..529 | 222 | 27.1 | Plus |
mkg-p-PB | 659 | CG7163-PB | 120..384 | 260..529 | 222 | 27.1 | Plus |