Clone BO12044 Report

Search the DGRC for BO12044

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:120
Well:44
Vector:pDNR-Dual
Associated Gene/TranscriptCG13679-RB
Protein status:BO12044.pep:
Sequenced Size:391

Clone Sequence Records

BO12044.3prime Sequence

389 bp (388 high quality bases) assembled on 2006-04-18

> BO12044.3prime
ATGGTCTAGAAAGCTTGCCTTCTTCAGCAGCAGAGGAGCGGCAGCGGTGG
CCACATAGGGAGAGCTGTAGGCCAGGGGCGAGGTGTAGGCGGCGGCGTAG
GGAGCGATGGGAGCGGCATAGGCAGCGGCCACTGGAGCGGTATAGGCGGC
AGCAACGGGAGCGGTGTAGGCGGCGGTGTAGGCAGCTGGGAAGGCTGCGC
TGTGAGCCACCGAGTGGGCGCTGTAGCTGGAGGCATAGGGAGCCACGTAC
GCGGCACTGCCCACCACAGCCGGAGCGGTGTAGGCCAGAGGAGCGGCGGC
CAGAGGAGCCACAAGTCCAGGCTTGGCAGCAGCCACAGCCACAACAGCGA
AGAAGCAGACGGCGATGAATTTCATGTCGACTGATAACT

BO12044.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:35:56
Subject Length Description Subject Range Query Range Score Percent Strand
CG13679-PB 360 CG13679-RB 1..357 375..19 1785 100 Minus
CG13679-PA 438 CG13679-RA 88..435 366..19 1740 100 Minus
CG13678-PA 387 CG13678-RA 21..192 355..184 685 95.9 Minus
CG13674-PA 414 CG13674-RA 67..251 294..110 650 94 Minus
CG13678-PA 387 CG13678-RA 286..338 102..50 240 98.1 Minus
CG13674-PA 414 CG13674-RA 1..53 375..323 240 98.1 Minus
CG13678-PA 387 CG13678-RA 342..384 61..19 140 93 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 04:13:05
Subject Length Description Subject Range Query Range Score Percent Strand
CG13679-RB 489 CG13679-RB 66..424 377..19 1795 100 Minus
CG13674-RB 559 CG13674-RB 65..317 377..110 865 88.4 Minus
CG13674-RA 687 CG13674-RA 65..317 377..110 865 88.4 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 04:13:02
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 8202933..8203280 366..19 1740 100 Minus
3L 28110227 3L 8218602..8218842 110..365 795 88.3 Plus
3L 28110227 3L 8222475..8222792 355..50 775 83.6 Minus
3L 28110227 3L 8218581..8218639 113..171 190 88.1 Plus
Blast to na_te.dros performed on 2015-02-12 04:13:03 has no hits.

BO12044.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:24:19 Download gff for BO12044.3prime
Subject Subject Range Query Range Percent Splice Strand
CG13679-PB 1..360 15..375 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 04:55:12 Download gff for BO12044.3prime
Subject Subject Range Query Range Percent Splice Strand
CG13679-PB 1..360 15..375 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 23:35:54 Download gff for BO12044.3prime
Subject Subject Range Query Range Percent Splice Strand
CG13679-RB 54..429 11..389 97   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 06:55:49 Download gff for BO12044.3prime
Subject Subject Range Query Range Percent Splice Strand
CG13679-RB 54..429 11..389 97   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 06:55:49 Download gff for BO12044.3prime
Subject Subject Range Query Range Percent Splice Strand
3L 8202929..8203285 11..370 98   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 23:35:54 Download gff for BO12044.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 8196029..8196385 11..370 98   Minus

BO12044.5prime Sequence

389 bp (388 high quality bases) assembled on 2006-04-18

> BO12044.5prime
GAAGTTATCAGTCGACATGAAATTCATCGCCGTCTGCTTCTTCGCTGTTG
TGGCTGTGGCTGCTGCCAAGCCTGGACTTGTGGCTCCTCTGGCCGCCGCT
CCTCTGGCCTACACCGCTCCGGCTGTGGTGGGCAGTGCCGCGTACGTGGC
TCCCTATGCCTCCAGCTACAGCGCCCACTCGGTGGCTCACAGCGCAGCCT
TCCCAGCTGCCTACACCGCCGCCTACACCGCTCCCGTTGCTGCCGCCTAT
ACCGCTCCAGTGGCCGCTGCCTATGCCGCTCCCATCGCTCCCTACGCCGC
CGCCTACACCTCGCCCCTGGCCTACAGCTCTCCCTATGTGGCCACCGCTG
CCGCTCCTCTGCTGCTGAAGAAGGCAAGCTTTCTAGACC

BO12044.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:35:57
Subject Length Description Subject Range Query Range Score Percent Strand
CG13679-PB 360 CG13679-RB 1..357 17..373 1785 100 Plus
CG13679-PA 438 CG13679-RA 88..435 26..373 1740 100 Plus
CG13678-PA 387 CG13678-RA 21..192 37..208 685 95.9 Plus
CG13674-PA 414 CG13674-RA 67..251 98..282 650 94 Plus
CG13678-PA 387 CG13678-RA 286..338 290..342 240 98.1 Plus
CG13674-PA 414 CG13674-RA 1..53 17..69 240 98.1 Plus
CG13678-PA 387 CG13678-RA 342..384 331..373 140 93 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 05:25:17
Subject Length Description Subject Range Query Range Score Percent Strand
CG13679-RB 489 CG13679-RB 66..424 15..373 1795 100 Plus
CG13674-RB 559 CG13674-RB 65..317 15..282 865 88.4 Plus
CG13674-RA 687 CG13674-RA 65..317 15..282 865 88.4 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 05:25:10
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 8202933..8203280 26..373 1740 100 Plus
3L 28110227 3L 8218602..8218842 282..27 795 88.3 Minus
3L 28110227 3L 8222475..8222792 37..342 775 83.6 Plus
3L 28110227 3L 8218581..8218639 279..221 190 88.1 Minus
Blast to na_te.dros performed on 2015-02-12 05:25:14 has no hits.

BO12044.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:24:20 Download gff for BO12044.5prime
Subject Subject Range Query Range Percent Splice Strand
CG13679-PB 1..360 17..377 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 04:55:13 Download gff for BO12044.5prime
Subject Subject Range Query Range Percent Splice Strand
CG13679-PB 1..360 17..377 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 03:59:02 Download gff for BO12044.5prime
Subject Subject Range Query Range Percent Splice Strand
CG13679-RB 54..429 2..381 97   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 07:22:50 Download gff for BO12044.5prime
Subject Subject Range Query Range Percent Splice Strand
CG13679-RB 54..429 2..381 97   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 07:22:50 Download gff for BO12044.5prime
Subject Subject Range Query Range Percent Splice Strand
3L 8202929..8203285 22..381 98   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 03:59:02 Download gff for BO12044.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 8196029..8196385 22..381 98   Plus

BO12044.complete Sequence

391 bp assembled on 2007-06-22

GenBank Submission: FJ632291

> BO12044.complete
GAAGTTATCAGTCGACATGAAATTCATCGCCGTCTGCTTCTTCGCTGTTG
TGGCTGTGGCTGCTGCCAAGCCTGGACTTGTGGCTCCTCTGGCCGCCGCT
CCTCTGGCCTACACCGCTCCGGCTGTGGTGGGCAGTGCCGCGTACGTGGC
TCCCTATGCCTCCAGCTACAGCGCCCACTCGGTGGCTCACAGCGCAGCCT
TCCCAGCTGCCTACACCGCCGCCTACACCGCTCCCGTTGCTGCCGCCTAT
ACCGCTCCAGTGGCCGCTGCCTATGCCGCTCCCATCGCTCCCTACGCCGC
CGCCTACACCTCGCCCCTGGCCTACAGCTCTCCCTATGTGGCCACCGCTG
CCGCTCCTCTGCTGCTGAAGAAGGCAAGCTTTCTAGACCAT

BO12044.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 01:10:19
Subject Length Description Subject Range Query Range Score Percent Strand
CG13679-RB 360 CG13679-PB 1..357 17..373 1785 100 Plus
CG13674-RB 414 CG13674-PB 1..251 17..282 830 88.3 Plus
CG13674-RA 414 CG13674-PA 1..251 17..282 830 88.3 Plus
CG13674-RB 414 CG13674-PB 214..272 221..279 190 88.1 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:10:20
Subject Length Description Subject Range Query Range Score Percent Strand
CG13679-RB 489 CG13679-RB 66..424 15..373 1795 100 Plus
CG13674-RB 559 CG13674-RB 65..317 15..282 840 88.4 Plus
CG13674-RA 687 CG13674-RA 65..317 15..282 840 88.4 Plus
CG13674-RB 559 CG13674-RB 280..338 221..279 190 88.1 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 01:10:18
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 8202933..8203280 26..373 1740 100 Plus
3L 28110227 3L 8218602..8218842 282..27 795 88.3 Minus
3L 28110227 3L 8222475..8222792 37..342 775 83.6 Plus
3L 28110227 3L 8218581..8218639 279..221 190 88.1 Minus
Blast to na_te.dros performed on 2014-11-28 01:10:19 has no hits.

BO12044.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:08:36 Download gff for BO12044.complete
Subject Subject Range Query Range Percent Splice Strand
CG13679-RB 1..360 17..377 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:25:21 Download gff for BO12044.complete
Subject Subject Range Query Range Percent Splice Strand
CG13679-RB 52..427 2..381 97   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:41:02 Download gff for BO12044.complete
Subject Subject Range Query Range Percent Splice Strand
CG13679-RB 68..424 17..375 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:08:36 Download gff for BO12044.complete
Subject Subject Range Query Range Percent Splice Strand
CG13679-RB 52..427 2..381 97   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:46:26 Download gff for BO12044.complete
Subject Subject Range Query Range Percent Splice Strand
CG13679-RB 68..424 17..375 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:46:26 Download gff for BO12044.complete
Subject Subject Range Query Range Percent Splice Strand
3L 8202929..8203280 22..375 98   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:41:02 Download gff for BO12044.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 8196029..8196380 22..375 98   Plus

BO12044.pep Sequence

Translation from 16 to 391

> BO12044.pep
MKFIAVCFFAVVAVAAAKPGLVAPLAAAPLAYTAPAVVGSAAYVAPYASS
YSAHSVAHSAAFPAAYTAAYTAPVAAAYTAPVAAAYAAPIAPYAAAYTSP
LAYSSPYVATAAAPLLLKKASFLDH

BO12044.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 02:39:01
Subject Length Description Subject Range Query Range Score Percent Strand
CG13679-PB 119 CG13679-PB 1..119 1..119 587 100 Plus
CG13678-PA 128 CG13678-PA 3..128 2..119 439 77.1 Plus
CG13674-PB 137 CG13674-PB 1..119 1..115 426 74.2 Plus
CG13674-PA 137 CG13674-PA 1..119 1..115 426 74.2 Plus
CG13066-PB 93 CG13066-PB 2..90 1..74 201 57.3 Plus