Clone Sequence Records
BO12044.3prime Sequence
389 bp (388 high quality bases) assembled on 2006-04-18
> BO12044.3prime
ATGGTCTAGAAAGCTTGCCTTCTTCAGCAGCAGAGGAGCGGCAGCGGTGG
CCACATAGGGAGAGCTGTAGGCCAGGGGCGAGGTGTAGGCGGCGGCGTAG
GGAGCGATGGGAGCGGCATAGGCAGCGGCCACTGGAGCGGTATAGGCGGC
AGCAACGGGAGCGGTGTAGGCGGCGGTGTAGGCAGCTGGGAAGGCTGCGC
TGTGAGCCACCGAGTGGGCGCTGTAGCTGGAGGCATAGGGAGCCACGTAC
GCGGCACTGCCCACCACAGCCGGAGCGGTGTAGGCCAGAGGAGCGGCGGC
CAGAGGAGCCACAAGTCCAGGCTTGGCAGCAGCCACAGCCACAACAGCGA
AGAAGCAGACGGCGATGAATTTCATGTCGACTGATAACT
BO12044.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:35:56
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG13679-PB | 360 | CG13679-RB | 1..357 | 375..19 | 1785 | 100 | Minus |
CG13679-PA | 438 | CG13679-RA | 88..435 | 366..19 | 1740 | 100 | Minus |
CG13678-PA | 387 | CG13678-RA | 21..192 | 355..184 | 685 | 95.9 | Minus |
CG13674-PA | 414 | CG13674-RA | 67..251 | 294..110 | 650 | 94 | Minus |
CG13678-PA | 387 | CG13678-RA | 286..338 | 102..50 | 240 | 98.1 | Minus |
CG13674-PA | 414 | CG13674-RA | 1..53 | 375..323 | 240 | 98.1 | Minus |
CG13678-PA | 387 | CG13678-RA | 342..384 | 61..19 | 140 | 93 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 04:13:05
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG13679-RB | 489 | CG13679-RB | 66..424 | 377..19 | 1795 | 100 | Minus |
CG13674-RB | 559 | CG13674-RB | 65..317 | 377..110 | 865 | 88.4 | Minus |
CG13674-RA | 687 | CG13674-RA | 65..317 | 377..110 | 865 | 88.4 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 04:13:02
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 8202933..8203280 | 366..19 | 1740 | 100 | Minus |
3L | 28110227 | 3L | 8218602..8218842 | 110..365 | 795 | 88.3 | Plus |
3L | 28110227 | 3L | 8222475..8222792 | 355..50 | 775 | 83.6 | Minus |
3L | 28110227 | 3L | 8218581..8218639 | 113..171 | 190 | 88.1 | Plus |
Blast to na_te.dros performed on 2015-02-12 04:13:03 has no hits.
BO12044.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:24:19 Download gff for
BO12044.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13679-PB | 1..360 | 15..375 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 04:55:12 Download gff for
BO12044.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13679-PB | 1..360 | 15..375 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 23:35:54 Download gff for
BO12044.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13679-RB | 54..429 | 11..389 | 97 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 06:55:49 Download gff for
BO12044.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13679-RB | 54..429 | 11..389 | 97 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 06:55:49 Download gff for
BO12044.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 8202929..8203285 | 11..370 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 23:35:54 Download gff for
BO12044.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 8196029..8196385 | 11..370 | 98 | | Minus |
BO12044.5prime Sequence
389 bp (388 high quality bases) assembled on 2006-04-18
> BO12044.5prime
GAAGTTATCAGTCGACATGAAATTCATCGCCGTCTGCTTCTTCGCTGTTG
TGGCTGTGGCTGCTGCCAAGCCTGGACTTGTGGCTCCTCTGGCCGCCGCT
CCTCTGGCCTACACCGCTCCGGCTGTGGTGGGCAGTGCCGCGTACGTGGC
TCCCTATGCCTCCAGCTACAGCGCCCACTCGGTGGCTCACAGCGCAGCCT
TCCCAGCTGCCTACACCGCCGCCTACACCGCTCCCGTTGCTGCCGCCTAT
ACCGCTCCAGTGGCCGCTGCCTATGCCGCTCCCATCGCTCCCTACGCCGC
CGCCTACACCTCGCCCCTGGCCTACAGCTCTCCCTATGTGGCCACCGCTG
CCGCTCCTCTGCTGCTGAAGAAGGCAAGCTTTCTAGACC
BO12044.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:35:57
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG13679-PB | 360 | CG13679-RB | 1..357 | 17..373 | 1785 | 100 | Plus |
CG13679-PA | 438 | CG13679-RA | 88..435 | 26..373 | 1740 | 100 | Plus |
CG13678-PA | 387 | CG13678-RA | 21..192 | 37..208 | 685 | 95.9 | Plus |
CG13674-PA | 414 | CG13674-RA | 67..251 | 98..282 | 650 | 94 | Plus |
CG13678-PA | 387 | CG13678-RA | 286..338 | 290..342 | 240 | 98.1 | Plus |
CG13674-PA | 414 | CG13674-RA | 1..53 | 17..69 | 240 | 98.1 | Plus |
CG13678-PA | 387 | CG13678-RA | 342..384 | 331..373 | 140 | 93 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 05:25:17
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG13679-RB | 489 | CG13679-RB | 66..424 | 15..373 | 1795 | 100 | Plus |
CG13674-RB | 559 | CG13674-RB | 65..317 | 15..282 | 865 | 88.4 | Plus |
CG13674-RA | 687 | CG13674-RA | 65..317 | 15..282 | 865 | 88.4 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 05:25:10
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 8202933..8203280 | 26..373 | 1740 | 100 | Plus |
3L | 28110227 | 3L | 8218602..8218842 | 282..27 | 795 | 88.3 | Minus |
3L | 28110227 | 3L | 8222475..8222792 | 37..342 | 775 | 83.6 | Plus |
3L | 28110227 | 3L | 8218581..8218639 | 279..221 | 190 | 88.1 | Minus |
Blast to na_te.dros performed on 2015-02-12 05:25:14 has no hits.
BO12044.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:24:20 Download gff for
BO12044.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13679-PB | 1..360 | 17..377 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 04:55:13 Download gff for
BO12044.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13679-PB | 1..360 | 17..377 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 03:59:02 Download gff for
BO12044.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13679-RB | 54..429 | 2..381 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 07:22:50 Download gff for
BO12044.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13679-RB | 54..429 | 2..381 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 07:22:50 Download gff for
BO12044.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 8202929..8203285 | 22..381 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 03:59:02 Download gff for
BO12044.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 8196029..8196385 | 22..381 | 98 | | Plus |
BO12044.complete Sequence
391 bp assembled on 2007-06-22
GenBank Submission: FJ632291
> BO12044.complete
GAAGTTATCAGTCGACATGAAATTCATCGCCGTCTGCTTCTTCGCTGTTG
TGGCTGTGGCTGCTGCCAAGCCTGGACTTGTGGCTCCTCTGGCCGCCGCT
CCTCTGGCCTACACCGCTCCGGCTGTGGTGGGCAGTGCCGCGTACGTGGC
TCCCTATGCCTCCAGCTACAGCGCCCACTCGGTGGCTCACAGCGCAGCCT
TCCCAGCTGCCTACACCGCCGCCTACACCGCTCCCGTTGCTGCCGCCTAT
ACCGCTCCAGTGGCCGCTGCCTATGCCGCTCCCATCGCTCCCTACGCCGC
CGCCTACACCTCGCCCCTGGCCTACAGCTCTCCCTATGTGGCCACCGCTG
CCGCTCCTCTGCTGCTGAAGAAGGCAAGCTTTCTAGACCAT
BO12044.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 01:10:19
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG13679-RB | 360 | CG13679-PB | 1..357 | 17..373 | 1785 | 100 | Plus |
CG13674-RB | 414 | CG13674-PB | 1..251 | 17..282 | 830 | 88.3 | Plus |
CG13674-RA | 414 | CG13674-PA | 1..251 | 17..282 | 830 | 88.3 | Plus |
CG13674-RB | 414 | CG13674-PB | 214..272 | 221..279 | 190 | 88.1 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:10:20
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG13679-RB | 489 | CG13679-RB | 66..424 | 15..373 | 1795 | 100 | Plus |
CG13674-RB | 559 | CG13674-RB | 65..317 | 15..282 | 840 | 88.4 | Plus |
CG13674-RA | 687 | CG13674-RA | 65..317 | 15..282 | 840 | 88.4 | Plus |
CG13674-RB | 559 | CG13674-RB | 280..338 | 221..279 | 190 | 88.1 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 01:10:18
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 8202933..8203280 | 26..373 | 1740 | 100 | Plus |
3L | 28110227 | 3L | 8218602..8218842 | 282..27 | 795 | 88.3 | Minus |
3L | 28110227 | 3L | 8222475..8222792 | 37..342 | 775 | 83.6 | Plus |
3L | 28110227 | 3L | 8218581..8218639 | 279..221 | 190 | 88.1 | Minus |
Blast to na_te.dros performed on 2014-11-28 01:10:19 has no hits.
BO12044.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:08:36 Download gff for
BO12044.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13679-RB | 1..360 | 17..377 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:25:21 Download gff for
BO12044.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13679-RB | 52..427 | 2..381 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:41:02 Download gff for
BO12044.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13679-RB | 68..424 | 17..375 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:08:36 Download gff for
BO12044.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13679-RB | 52..427 | 2..381 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:46:26 Download gff for
BO12044.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13679-RB | 68..424 | 17..375 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:46:26 Download gff for
BO12044.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 8202929..8203280 | 22..375 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:41:02 Download gff for
BO12044.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 8196029..8196380 | 22..375 | 98 | | Plus |
BO12044.pep Sequence
Translation from 16 to 391
> BO12044.pep
MKFIAVCFFAVVAVAAAKPGLVAPLAAAPLAYTAPAVVGSAAYVAPYASS
YSAHSVAHSAAFPAAYTAAYTAPVAAAYTAPVAAAYAAPIAPYAAAYTSP
LAYSSPYVATAAAPLLLKKASFLDH
BO12044.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 02:39:01
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG13679-PB | 119 | CG13679-PB | 1..119 | 1..119 | 587 | 100 | Plus |
CG13678-PA | 128 | CG13678-PA | 3..128 | 2..119 | 439 | 77.1 | Plus |
CG13674-PB | 137 | CG13674-PB | 1..119 | 1..115 | 426 | 74.2 | Plus |
CG13674-PA | 137 | CG13674-PA | 1..119 | 1..115 | 426 | 74.2 | Plus |
CG13066-PB | 93 | CG13066-PB | 2..90 | 1..74 | 201 | 57.3 | Plus |