Clone Sequence Records
BO12047.3prime Sequence
829 bp (817 high quality bases) assembled on 2006-04-20
> BO12047.3prime
ATGGTCTAGAAAGCTTGCCGGCTGCTTCGTCTCACCATTCCCCTGCCACT
TCTTTTCATCCGCTGCCTGGTTCGTTTCCGTTTCCGGTTCCGCTTCCGCC
GGTTCCTCCAGCCTCAGCTCAGACTCCATCTCCAGCTGCAAATCCAAGCC
GTACTCCTCCCTGTCGACGGTTAGCTTGGTAACGCTTTCGAGGGTTTTTA
TGGTTTGCATATACAGCTTCTTGGCCAACTCCTTGTCTTGGCCCGTCACC
GAACTTGCCGCAATTTCGCAATCATTGAAGTACTCGCCGGTGACTTCCTT
CAGCTGGGGATCGGTGGCCAAGCGGATGGCGCACTGGGCGCCCTCGTAGG
CATTCTTCATGAACAGCCACATCCACGGATAGGTGACCGCCTTCACGCAG
AGGGACGACATCAGCGGCGAGTTGCGAAAATGGCGGGTTCCACGGACGAG
TCCTGGCGTACAGCAGTTGACCGTGACCGAGGTACCTTTCAGTTCCCTGG
CCATCCAACGGGTGGCAAGGAGCACGCAGAGCTTGGAGTGGGCAAATGCT
TCGCGGGCGTGGAACTTCACCGACCAGGTGCCCACATTCAGGGGATCGTC
GAAATCGATTTTGGCGCCCTGATGGGCATGGGCGGAAACGAAGAGGATGC
GTCCTTGCTCCGAGCGTTGCAAGTGTGGCAGGAGCAGGTGGGTCAACAGG
AAGGGGGCCAGATAGTTCACCTGGCTGTGCCGTTCGAAGCCATCCTCGGT
GGGCATCTGAGTGTTGGCGAATACCACTCCGGCATTGTTCACCAGCACAT
CGATCCGCTCGAATTCCGCCATCAGCTGG
BO12047.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:36:00
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG31235-PA | 1221 | CG31235-RA | 408..1218 | 829..19 | 4055 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 10:35:33
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG31235-RB | 2494 | CG31235-RB | 532..1342 | 829..19 | 4055 | 100 | Minus |
CG31235-RA | 1564 | CG31235-RA | 532..1342 | 829..19 | 4055 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 10:35:28
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 18326003..18326349 | 483..829 | 1735 | 100 | Plus |
3R | 32079331 | 3R | 18317227..18317482 | 19..274 | 1280 | 100 | Plus |
3R | 32079331 | 3R | 18317615..18317765 | 275..425 | 740 | 99.3 | Plus |
3R | 32079331 | 3R | 18325478..18325543 | 422..487 | 330 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-11 10:35:31 has no hits.
BO12047.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:24:25 Download gff for
BO12047.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31235-PA | 408..1221 | 18..829 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 04:55:21 Download gff for
BO12047.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31235-PA | 408..1221 | 18..829 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-24 05:06:22 Download gff for
BO12047.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31235-RA | 532..1342 | 19..829 | 100 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 12:14:49 Download gff for
BO12047.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31235-RA | 532..1342 | 19..829 | 100 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 12:14:49 Download gff for
BO12047.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 18317227..18317482 | 19..274 | 100 | <- | Plus |
3R | 18317615..18317761 | 275..421 | 100 | <- | Plus |
3R | 18325478..18325541 | 422..485 | 100 | <- | Plus |
3R | 18326006..18326349 | 486..829 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 05:06:22 Download gff for
BO12047.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 14143337..14143483 | 275..421 | 100 | <- | Plus |
arm_3R | 14151200..14151263 | 422..485 | 100 | <- | Plus |
arm_3R | 14142949..14143204 | 19..274 | 100 | <- | Plus |
arm_3R | 14151728..14152071 | 486..829 | 100 | | Plus |
BO12047.5prime Sequence
882 bp (762 high quality bases) assembled on 2006-04-18
> BO12047.5prime
GAAGTTATCAGTCGACATGGAACGATTGCTGACCATGTTCGAGGAGGCGG
ATCCCTTCGCCACGTGGTGGCCCACGATAGCGGCCCTCACGGTGGGCATT
GTGATTACGGTGCGGACCTTAATGAGCGGCCAGCGCTGTCCGAACGATAA
TCAAATCAAGGAGCAAATCGTGGTGGTCACCGGCGGCAACAGCGGCATTG
GCTTCGAAATAGCCCAGGCTCTGGCTGGCCGAGGTGGCCGGATAATCCTC
GCCTGCCGCAATCTCGAGGCCGGGAAGCGGGCGGCGGCCATAATCAAACG
TGAGCTGGGCTGCCGCACACCCCTGAATTCCTTGGATGAGGATGACAATC
CGGAGGACAGGTACTTCGTGGAGGCACGCTACTTGGACCTCTGTTCGCTG
CGCAGTGTCCATCACTTTGCCGGCCAGCTGATGGCGGAATTCGAGCGGAT
CGATGTGCTGGTGAACAATGCCGGAGTGGTATTCGCCAACACTCAGATGC
CCACCGAGGATGGCTTCGAACGGCACAGCCAGGTGAACTATCTGGCCCCC
TTCCTGTTGACCCACCTGCTCCTGCCACACTTGCAACGCTCGGAGCAAGG
ACGCATCCTCTTCGTTTCCGCCCATGCCCATCAGGGCGCCAAAATCGATT
TCGACGATCCCCTGAATGTGGGCACCTGGTCAGTGAAGTTCCACGCCCGC
GAAGCATTTGCCCACTCCAAGCTCTGCGTGCTCCTTGCCACCCGTTGGAT
GGCCAGGGAACTGAAAGGTACCTCGGTCACGGTCAACTGCTGTACGCCAG
GACTCGTCCGTGGAACCCGCCATTTTCGCAACTCGCCGCTGATGTCGTCC
CTCTGCGTGAAGGCGGTCACCTATCCGTGGAT
BO12047.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:36:01
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG31235-PA | 1221 | CG31235-RA | 1..866 | 17..882 | 4305 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 21:00:02
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG31235-RB | 2494 | CG31235-RB | 125..990 | 17..882 | 4315 | 99.9 | Plus |
CG31235-RA | 1564 | CG31235-RA | 125..990 | 17..882 | 4315 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 20:59:57
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 18326003..18326659 | 770..114 | 3270 | 99.8 | Minus |
3R | 32079331 | 3R | 18328720..18328818 | 115..17 | 495 | 100 | Minus |
3R | 32079331 | 3R | 18325478..18325543 | 831..766 | 330 | 100 | Minus |
3R | 32079331 | 3R | 18317711..18317765 | 882..828 | 260 | 98.2 | Minus |
Blast to na_te.dros performed on 2015-02-10 21:00:00 has no hits.
BO12047.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:24:27 Download gff for
BO12047.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31235-PA | 1..866 | 17..882 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 04:55:22 Download gff for
BO12047.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31235-PA | 1..866 | 17..882 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 04:04:19 Download gff for
BO12047.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31235-RA | 116..990 | 9..882 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:40:37 Download gff for
BO12047.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31235-RA | 116..990 | 9..882 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:40:37 Download gff for
BO12047.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 18317711..18317761 | 832..882 | 100 | <- | Minus |
3R | 18325478..18325541 | 768..831 | 100 | <- | Minus |
3R | 18326006..18326658 | 115..767 | 99 | <- | Minus |
3R | 18328721..18328827 | 9..114 | 96 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 04:04:19 Download gff for
BO12047.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 14143433..14143483 | 832..882 | 100 | <- | Minus |
arm_3R | 14151200..14151263 | 768..831 | 100 | <- | Minus |
arm_3R | 14151728..14152380 | 115..767 | 99 | <- | Minus |
arm_3R | 14154443..14154549 | 9..114 | 96 | | Minus |
BO12047.complete Sequence
1252 bp assembled on 2006-10-11
GenBank Submission: FJ632292
> BO12047.complete
GAAGTTATCAGTCGACATGGAACGATTGCTGACCATGTTCGAGGAGGCGG
ATCCCTTCGCCACGTGGTGGCCCACGATAGCGGCCCTCACGGTGGGCATT
GTGATTACGGTGCGGACCTTAATGAGCGGCCAGCGCTGTCCGAACGATAA
TCAAATCAAGGAGCAAATCGTGGTGGTCACCGGCGGCAACAGCGGCATTG
GCTTCGAAATAGCCCAGGCTCTGGCTGGCCGAGGTGGCCGGATAATCCTC
GCCTGCCGCAATCTCGAGGCCGGGAAGCGGGCGGCGGCCATAATCAAACG
TGAGCTGGGCTGCCGCACACCCCTGAATTCCTTGGATGAGGATGACAATC
CGGAGGACAGGTACTTCGTGGAGGCACGCTACTTGGACCTCTGTTCGCTG
CGCAGTGTCCATCACTTTGCCGGCCAGCTGATGGCGGAATTCGAGCGGAT
CGATGTGCTGGTGAACAATGCCGGAGTGGTATTCGCCAACACTCAGATGC
CCACCGAGGATGGCTTCGAACGGCACAGCCAGGTGAACTATCTGGCCCCC
TTCCTGTTGACCCACCTGCTCCTGCCACACTTGCAACGCTCGGAGCAAGG
ACGCATCCTCTTCGTTTCCGCCCATGCCCATCAGGGCGCCAAAATCGATT
TCGACGATCCCCTGAATGTGGGCACCTGGTCGGTGAAGTTCCACGCCCGC
GAAGCATTTGCCCACTCCAAGCTCTGCGTGCTCCTTGCCACCCGTTGGAT
GGCCAGGGAACTGAAAGGTACCTCGGTCACGGTCAACTGCTGTACGCCAG
GACTCGTCCGTGGAACCCGCCATTTTCGCAACTCGCCGCTGATGTCGTCC
CTCTGCGTGAAGGCGGTCACCTATCCGTGGATGTGGCTGTTCATGAAGAA
TGCCTACGAGGGCGCCCAGTGCGCCATCCGCTTGGCCACCGATCCCCAGC
TGAAGGAAGTCACCGGCGAGTACTTCAATGATTGCGAAATTGCGGCAAGT
TCGGTGACGGGCCAAGACAAGGAGTTGGCCAAGAAGCTGTATATGCAAAC
CATAAAAACCCTCGAAAGCGTTACCAAGCTAACCGTCGACAGGGAGGAGT
ACGGCTTGGATTTGCAGCTGGAGATGGAGTCTGAGCTGAGGCTGGAGGAA
CCGGCGGAAGCGGAACCGGAAACGGAAACGAACCAGGCAGCGGATGAAAA
GAAGTGGCAGGGGAATGGTGAGACGAAGCAGCCGGCAAGCTTTCTAGACC
AT
BO12047.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 08:05:11
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG31235-RB | 1221 | CG31235-PB | 1..1218 | 17..1234 | 6090 | 100 | Plus |
CG31235-RA | 1221 | CG31235-PA | 1..1218 | 17..1234 | 6090 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 08:05:12
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG31235-RB | 2494 | CG31235-RB | 125..1342 | 17..1234 | 6090 | 100 | Plus |
CG31235-RA | 1564 | CG31235-RA | 125..1342 | 17..1234 | 6090 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 08:05:09
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 18326003..18326659 | 770..114 | 3285 | 100 | Minus |
3R | 32079331 | 3R | 18317227..18317482 | 1234..979 | 1280 | 100 | Minus |
3R | 32079331 | 3R | 18317615..18317765 | 978..828 | 740 | 99.3 | Minus |
3R | 32079331 | 3R | 18328720..18328818 | 115..17 | 495 | 100 | Minus |
3R | 32079331 | 3R | 18325478..18325543 | 831..766 | 330 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 08:05:10 has no hits.
BO12047.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 13:40:50 Download gff for
BO12047.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31235-RA | 1..1221 | 17..1235 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-07-28 16:48:21 Download gff for
BO12047.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31235-RA | 122..1339 | 17..1236 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:18:48 Download gff for
BO12047.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31235-RA | 125..1342 | 17..1236 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 13:40:50 Download gff for
BO12047.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31235-RA | 113..1339 | 9..1234 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 09:10:30 Download gff for
BO12047.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31235-RA | 125..1342 | 17..1236 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 09:10:30 Download gff for
BO12047.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 18317225..18317482 | 979..1236 | 99 | <- | Minus |
3R | 18317615..18317761 | 832..978 | 100 | <- | Minus |
3R | 18325478..18325541 | 768..831 | 100 | <- | Minus |
3R | 18326006..18326658 | 115..767 | 100 | <- | Minus |
3R | 18328721..18328818 | 17..114 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:18:48 Download gff for
BO12047.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 14142947..14143204 | 979..1236 | 99 | <- | Minus |
arm_3R | 14143337..14143483 | 832..978 | 100 | <- | Minus |
arm_3R | 14151200..14151263 | 768..831 | 100 | <- | Minus |
arm_3R | 14151728..14152380 | 115..767 | 100 | <- | Minus |
arm_3R | 14154443..14154540 | 17..114 | 100 | | Minus |
BO12047.pep Sequence
Translation from 16 to 1252
> BO12047.pep
MERLLTMFEEADPFATWWPTIAALTVGIVITVRTLMSGQRCPNDNQIKEQ
IVVVTGGNSGIGFEIAQALAGRGGRIILACRNLEAGKRAAAIIKRELGCR
TPLNSLDEDDNPEDRYFVEARYLDLCSLRSVHHFAGQLMAEFERIDVLVN
NAGVVFANTQMPTEDGFERHSQVNYLAPFLLTHLLLPHLQRSEQGRILFV
SAHAHQGAKIDFDDPLNVGTWSVKFHAREAFAHSKLCVLLATRWMARELK
GTSVTVNCCTPGLVRGTRHFRNSPLMSSLCVKAVTYPWMWLFMKNAYEGA
QCAIRLATDPQLKEVTGEYFNDCEIAASSVTGQDKELAKKLYMQTIKTLE
SVTKLTVDREEYGLDLQLEMESELRLEEPAEAEPETETNQAADEKKWQGN
GETKQPASFLDH
BO12047.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:51:50
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG31235-PB | 406 | CG31235-PB | 1..406 | 1..406 | 2125 | 100 | Plus |
CG31235-PA | 406 | CG31235-PA | 1..406 | 1..406 | 2125 | 100 | Plus |
CG30495-PA | 327 | CG30495-PA | 21..321 | 26..347 | 442 | 35 | Plus |
CG2070-PB | 325 | CG2070-PB | 17..319 | 22..347 | 439 | 36.1 | Plus |
CG2070-PA | 325 | CG2070-PA | 17..319 | 22..347 | 439 | 36.1 | Plus |