Clone BO12047 Report

Search the DGRC for BO12047

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:120
Well:47
Vector:pDNR-Dual
Associated Gene/TranscriptCG31235-RA
Protein status:BO12047.pep: validated full length
Sequenced Size:1252

Clone Sequence Records

BO12047.3prime Sequence

829 bp (817 high quality bases) assembled on 2006-04-20

> BO12047.3prime
ATGGTCTAGAAAGCTTGCCGGCTGCTTCGTCTCACCATTCCCCTGCCACT
TCTTTTCATCCGCTGCCTGGTTCGTTTCCGTTTCCGGTTCCGCTTCCGCC
GGTTCCTCCAGCCTCAGCTCAGACTCCATCTCCAGCTGCAAATCCAAGCC
GTACTCCTCCCTGTCGACGGTTAGCTTGGTAACGCTTTCGAGGGTTTTTA
TGGTTTGCATATACAGCTTCTTGGCCAACTCCTTGTCTTGGCCCGTCACC
GAACTTGCCGCAATTTCGCAATCATTGAAGTACTCGCCGGTGACTTCCTT
CAGCTGGGGATCGGTGGCCAAGCGGATGGCGCACTGGGCGCCCTCGTAGG
CATTCTTCATGAACAGCCACATCCACGGATAGGTGACCGCCTTCACGCAG
AGGGACGACATCAGCGGCGAGTTGCGAAAATGGCGGGTTCCACGGACGAG
TCCTGGCGTACAGCAGTTGACCGTGACCGAGGTACCTTTCAGTTCCCTGG
CCATCCAACGGGTGGCAAGGAGCACGCAGAGCTTGGAGTGGGCAAATGCT
TCGCGGGCGTGGAACTTCACCGACCAGGTGCCCACATTCAGGGGATCGTC
GAAATCGATTTTGGCGCCCTGATGGGCATGGGCGGAAACGAAGAGGATGC
GTCCTTGCTCCGAGCGTTGCAAGTGTGGCAGGAGCAGGTGGGTCAACAGG
AAGGGGGCCAGATAGTTCACCTGGCTGTGCCGTTCGAAGCCATCCTCGGT
GGGCATCTGAGTGTTGGCGAATACCACTCCGGCATTGTTCACCAGCACAT
CGATCCGCTCGAATTCCGCCATCAGCTGG

BO12047.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:36:00
Subject Length Description Subject Range Query Range Score Percent Strand
CG31235-PA 1221 CG31235-RA 408..1218 829..19 4055 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 10:35:33
Subject Length Description Subject Range Query Range Score Percent Strand
CG31235-RB 2494 CG31235-RB 532..1342 829..19 4055 100 Minus
CG31235-RA 1564 CG31235-RA 532..1342 829..19 4055 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 10:35:28
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 18326003..18326349 483..829 1735 100 Plus
3R 32079331 3R 18317227..18317482 19..274 1280 100 Plus
3R 32079331 3R 18317615..18317765 275..425 740 99.3 Plus
3R 32079331 3R 18325478..18325543 422..487 330 100 Plus
Blast to na_te.dros performed on 2015-02-11 10:35:31 has no hits.

BO12047.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:24:25 Download gff for BO12047.3prime
Subject Subject Range Query Range Percent Splice Strand
CG31235-PA 408..1221 18..829 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 04:55:21 Download gff for BO12047.3prime
Subject Subject Range Query Range Percent Splice Strand
CG31235-PA 408..1221 18..829 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-24 05:06:22 Download gff for BO12047.3prime
Subject Subject Range Query Range Percent Splice Strand
CG31235-RA 532..1342 19..829 100   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 12:14:49 Download gff for BO12047.3prime
Subject Subject Range Query Range Percent Splice Strand
CG31235-RA 532..1342 19..829 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 12:14:49 Download gff for BO12047.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 18317227..18317482 19..274 100 <- Plus
3R 18317615..18317761 275..421 100 <- Plus
3R 18325478..18325541 422..485 100 <- Plus
3R 18326006..18326349 486..829 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 05:06:22 Download gff for BO12047.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 14143337..14143483 275..421 100 <- Plus
arm_3R 14151200..14151263 422..485 100 <- Plus
arm_3R 14142949..14143204 19..274 100 <- Plus
arm_3R 14151728..14152071 486..829 100   Plus

BO12047.5prime Sequence

882 bp (762 high quality bases) assembled on 2006-04-18

> BO12047.5prime
GAAGTTATCAGTCGACATGGAACGATTGCTGACCATGTTCGAGGAGGCGG
ATCCCTTCGCCACGTGGTGGCCCACGATAGCGGCCCTCACGGTGGGCATT
GTGATTACGGTGCGGACCTTAATGAGCGGCCAGCGCTGTCCGAACGATAA
TCAAATCAAGGAGCAAATCGTGGTGGTCACCGGCGGCAACAGCGGCATTG
GCTTCGAAATAGCCCAGGCTCTGGCTGGCCGAGGTGGCCGGATAATCCTC
GCCTGCCGCAATCTCGAGGCCGGGAAGCGGGCGGCGGCCATAATCAAACG
TGAGCTGGGCTGCCGCACACCCCTGAATTCCTTGGATGAGGATGACAATC
CGGAGGACAGGTACTTCGTGGAGGCACGCTACTTGGACCTCTGTTCGCTG
CGCAGTGTCCATCACTTTGCCGGCCAGCTGATGGCGGAATTCGAGCGGAT
CGATGTGCTGGTGAACAATGCCGGAGTGGTATTCGCCAACACTCAGATGC
CCACCGAGGATGGCTTCGAACGGCACAGCCAGGTGAACTATCTGGCCCCC
TTCCTGTTGACCCACCTGCTCCTGCCACACTTGCAACGCTCGGAGCAAGG
ACGCATCCTCTTCGTTTCCGCCCATGCCCATCAGGGCGCCAAAATCGATT
TCGACGATCCCCTGAATGTGGGCACCTGGTCAGTGAAGTTCCACGCCCGC
GAAGCATTTGCCCACTCCAAGCTCTGCGTGCTCCTTGCCACCCGTTGGAT
GGCCAGGGAACTGAAAGGTACCTCGGTCACGGTCAACTGCTGTACGCCAG
GACTCGTCCGTGGAACCCGCCATTTTCGCAACTCGCCGCTGATGTCGTCC
CTCTGCGTGAAGGCGGTCACCTATCCGTGGAT

BO12047.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:36:01
Subject Length Description Subject Range Query Range Score Percent Strand
CG31235-PA 1221 CG31235-RA 1..866 17..882 4305 99.8 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 21:00:02
Subject Length Description Subject Range Query Range Score Percent Strand
CG31235-RB 2494 CG31235-RB 125..990 17..882 4315 99.9 Plus
CG31235-RA 1564 CG31235-RA 125..990 17..882 4315 99.9 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 20:59:57
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 18326003..18326659 770..114 3270 99.8 Minus
3R 32079331 3R 18328720..18328818 115..17 495 100 Minus
3R 32079331 3R 18325478..18325543 831..766 330 100 Minus
3R 32079331 3R 18317711..18317765 882..828 260 98.2 Minus
Blast to na_te.dros performed on 2015-02-10 21:00:00 has no hits.

BO12047.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:24:27 Download gff for BO12047.5prime
Subject Subject Range Query Range Percent Splice Strand
CG31235-PA 1..866 17..882 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 04:55:22 Download gff for BO12047.5prime
Subject Subject Range Query Range Percent Splice Strand
CG31235-PA 1..866 17..882 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 04:04:19 Download gff for BO12047.5prime
Subject Subject Range Query Range Percent Splice Strand
CG31235-RA 116..990 9..882 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:40:37 Download gff for BO12047.5prime
Subject Subject Range Query Range Percent Splice Strand
CG31235-RA 116..990 9..882 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:40:37 Download gff for BO12047.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 18317711..18317761 832..882 100 <- Minus
3R 18325478..18325541 768..831 100 <- Minus
3R 18326006..18326658 115..767 99 <- Minus
3R 18328721..18328827 9..114 96   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 04:04:19 Download gff for BO12047.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 14143433..14143483 832..882 100 <- Minus
arm_3R 14151200..14151263 768..831 100 <- Minus
arm_3R 14151728..14152380 115..767 99 <- Minus
arm_3R 14154443..14154549 9..114 96   Minus

BO12047.complete Sequence

1252 bp assembled on 2006-10-11

GenBank Submission: FJ632292

> BO12047.complete
GAAGTTATCAGTCGACATGGAACGATTGCTGACCATGTTCGAGGAGGCGG
ATCCCTTCGCCACGTGGTGGCCCACGATAGCGGCCCTCACGGTGGGCATT
GTGATTACGGTGCGGACCTTAATGAGCGGCCAGCGCTGTCCGAACGATAA
TCAAATCAAGGAGCAAATCGTGGTGGTCACCGGCGGCAACAGCGGCATTG
GCTTCGAAATAGCCCAGGCTCTGGCTGGCCGAGGTGGCCGGATAATCCTC
GCCTGCCGCAATCTCGAGGCCGGGAAGCGGGCGGCGGCCATAATCAAACG
TGAGCTGGGCTGCCGCACACCCCTGAATTCCTTGGATGAGGATGACAATC
CGGAGGACAGGTACTTCGTGGAGGCACGCTACTTGGACCTCTGTTCGCTG
CGCAGTGTCCATCACTTTGCCGGCCAGCTGATGGCGGAATTCGAGCGGAT
CGATGTGCTGGTGAACAATGCCGGAGTGGTATTCGCCAACACTCAGATGC
CCACCGAGGATGGCTTCGAACGGCACAGCCAGGTGAACTATCTGGCCCCC
TTCCTGTTGACCCACCTGCTCCTGCCACACTTGCAACGCTCGGAGCAAGG
ACGCATCCTCTTCGTTTCCGCCCATGCCCATCAGGGCGCCAAAATCGATT
TCGACGATCCCCTGAATGTGGGCACCTGGTCGGTGAAGTTCCACGCCCGC
GAAGCATTTGCCCACTCCAAGCTCTGCGTGCTCCTTGCCACCCGTTGGAT
GGCCAGGGAACTGAAAGGTACCTCGGTCACGGTCAACTGCTGTACGCCAG
GACTCGTCCGTGGAACCCGCCATTTTCGCAACTCGCCGCTGATGTCGTCC
CTCTGCGTGAAGGCGGTCACCTATCCGTGGATGTGGCTGTTCATGAAGAA
TGCCTACGAGGGCGCCCAGTGCGCCATCCGCTTGGCCACCGATCCCCAGC
TGAAGGAAGTCACCGGCGAGTACTTCAATGATTGCGAAATTGCGGCAAGT
TCGGTGACGGGCCAAGACAAGGAGTTGGCCAAGAAGCTGTATATGCAAAC
CATAAAAACCCTCGAAAGCGTTACCAAGCTAACCGTCGACAGGGAGGAGT
ACGGCTTGGATTTGCAGCTGGAGATGGAGTCTGAGCTGAGGCTGGAGGAA
CCGGCGGAAGCGGAACCGGAAACGGAAACGAACCAGGCAGCGGATGAAAA
GAAGTGGCAGGGGAATGGTGAGACGAAGCAGCCGGCAAGCTTTCTAGACC
AT

BO12047.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 08:05:11
Subject Length Description Subject Range Query Range Score Percent Strand
CG31235-RB 1221 CG31235-PB 1..1218 17..1234 6090 100 Plus
CG31235-RA 1221 CG31235-PA 1..1218 17..1234 6090 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 08:05:12
Subject Length Description Subject Range Query Range Score Percent Strand
CG31235-RB 2494 CG31235-RB 125..1342 17..1234 6090 100 Plus
CG31235-RA 1564 CG31235-RA 125..1342 17..1234 6090 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 08:05:09
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 18326003..18326659 770..114 3285 100 Minus
3R 32079331 3R 18317227..18317482 1234..979 1280 100 Minus
3R 32079331 3R 18317615..18317765 978..828 740 99.3 Minus
3R 32079331 3R 18328720..18328818 115..17 495 100 Minus
3R 32079331 3R 18325478..18325543 831..766 330 100 Minus
Blast to na_te.dros performed on 2014-11-28 08:05:10 has no hits.

BO12047.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 13:40:50 Download gff for BO12047.complete
Subject Subject Range Query Range Percent Splice Strand
CG31235-RA 1..1221 17..1235 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-07-28 16:48:21 Download gff for BO12047.complete
Subject Subject Range Query Range Percent Splice Strand
CG31235-RA 122..1339 17..1236 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:18:48 Download gff for BO12047.complete
Subject Subject Range Query Range Percent Splice Strand
CG31235-RA 125..1342 17..1236 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 13:40:50 Download gff for BO12047.complete
Subject Subject Range Query Range Percent Splice Strand
CG31235-RA 113..1339 9..1234 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 09:10:30 Download gff for BO12047.complete
Subject Subject Range Query Range Percent Splice Strand
CG31235-RA 125..1342 17..1236 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 09:10:30 Download gff for BO12047.complete
Subject Subject Range Query Range Percent Splice Strand
3R 18317225..18317482 979..1236 99 <- Minus
3R 18317615..18317761 832..978 100 <- Minus
3R 18325478..18325541 768..831 100 <- Minus
3R 18326006..18326658 115..767 100 <- Minus
3R 18328721..18328818 17..114 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:18:48 Download gff for BO12047.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 14142947..14143204 979..1236 99 <- Minus
arm_3R 14143337..14143483 832..978 100 <- Minus
arm_3R 14151200..14151263 768..831 100 <- Minus
arm_3R 14151728..14152380 115..767 100 <- Minus
arm_3R 14154443..14154540 17..114 100   Minus

BO12047.pep Sequence

Translation from 16 to 1252

> BO12047.pep
MERLLTMFEEADPFATWWPTIAALTVGIVITVRTLMSGQRCPNDNQIKEQ
IVVVTGGNSGIGFEIAQALAGRGGRIILACRNLEAGKRAAAIIKRELGCR
TPLNSLDEDDNPEDRYFVEARYLDLCSLRSVHHFAGQLMAEFERIDVLVN
NAGVVFANTQMPTEDGFERHSQVNYLAPFLLTHLLLPHLQRSEQGRILFV
SAHAHQGAKIDFDDPLNVGTWSVKFHAREAFAHSKLCVLLATRWMARELK
GTSVTVNCCTPGLVRGTRHFRNSPLMSSLCVKAVTYPWMWLFMKNAYEGA
QCAIRLATDPQLKEVTGEYFNDCEIAASSVTGQDKELAKKLYMQTIKTLE
SVTKLTVDREEYGLDLQLEMESELRLEEPAEAEPETETNQAADEKKWQGN
GETKQPASFLDH

BO12047.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:51:50
Subject Length Description Subject Range Query Range Score Percent Strand
CG31235-PB 406 CG31235-PB 1..406 1..406 2125 100 Plus
CG31235-PA 406 CG31235-PA 1..406 1..406 2125 100 Plus
CG30495-PA 327 CG30495-PA 21..321 26..347 442 35 Plus
CG2070-PB 325 CG2070-PB 17..319 22..347 439 36.1 Plus
CG2070-PA 325 CG2070-PA 17..319 22..347 439 36.1 Plus