Clone Sequence Records
BO12052.3prime Sequence
902 bp (775 high quality bases) assembled on 2006-04-20
> BO12052.3prime
ATGGTCTAGAAAGCTTGCTTTGGATTTCAAACCCTCGCTGTCATCTATTT
TGTCTATGACCTGTTTTAAGCAATCTTTGGTCGAAGTCCTTTCCAAATCG
CAGATGCGTGTCAGATCCATCGTAGCGATCTGCTCGATCATTTCCTTGAT
CTTCTCCTGCTTTATGATGGACTTTACGGATTGCCGTAATCCAGCCTTTC
CTTGCGTTTTTTGGGTCTCTGCGGAGTCGTTTTCGATTTGTTTGCCCTTG
GCGCGGTAGTGCTGCTCGATAATTTGTCGAATCTTCATCTTGGTGGCTGC
TCTCGACTTCTTGGTTGCCTGTCCCAAGGCGAGGGTTCTCAGCTCCTGGA
AATTGATCTCCTTCAAGGGCGTTTCGATGGTCTCTGCCCCAGCATGGGGC
TCAGTATCCGTTTCCAGTTCTAGCGACATTTCCTCCACAGTGGACACGAT
GCCATCATCATCATCCGCATCGACTTGTAACCTGGATTTCATTTTCGGAT
CTCCTATCACTTTTGGAAATTCTTTAACAGGAGCTAATAACGTTTCTTTT
TCCACCGGGTATGTCTTAGTTTTTGCTATTTTCTCTTTTGTTTTTGATGC
CTCTTTTGGAGCCACTGGTCTCTTTTTAAGTATACCAATGCAAGGCTTCG
TCTTTATTCGCACCGGCAGCAGAGAATTGTATTGAATGCCGATGCTGTTG
AAGCAGTCAATAAACTCTAGCGTATCGAATTCGTTTTGGAGCGATGCCCA
TAGTTCCGTGTTTTGCTTGTTCTTCGCCTCGACCAAAAGATGTGTGTATG
CAACCAAATCCGCCTGGGTATAGTTCATTGTCTCGTCCTTGCTGTAAGTC
CATTCATTATTATTTTCCTAAAACGCGACACGCCGCTCTGGGCGGCCAGT
TG
BO12052.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:36:07
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8412-PA | 2037 | CG8412-RA | 1192..2034 | 861..19 | 4190 | 99.8 | Minus |
CG8412-PA | 2037 | CG8412-RA | 1154..1183 | 898..869 | 150 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-02 17:48:16
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8412-RA | 2527 | CG8412-RA | 1542..2422 | 898..19 | 4335 | 99.5 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-02 17:48:08
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 9758328..9759208 | 898..19 | 4310 | 99.5 | Minus |
Blast to na_te.dros performed on 2015-02-02 17:48:12 has no hits.
BO12052.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:24:36 Download gff for
BO12052.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8412-PA | 1149..2037 | 16..902 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 04:55:32 Download gff for
BO12052.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8412-PA | 1149..2037 | 16..902 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-08 17:27:49 Download gff for
BO12052.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8412-RA | 1537..2428 | 15..902 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-02 20:48:32 Download gff for
BO12052.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8412-RA | 1537..2428 | 15..902 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-02 20:48:32 Download gff for
BO12052.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 9758323..9759214 | 15..902 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-08 17:27:49 Download gff for
BO12052.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 5584045..5584936 | 15..902 | 99 | | Minus |
BO12052.5prime Sequence
942 bp (844 high quality bases) assembled on 2006-04-18
> BO12052.5prime
GAAGTTATCAGTCGACATGGACATCCTAATCTTTGTGACGGCGGCGGCCC
ATTTGGTCTACACGCCCTTTACGAAAGTGGAGGAGAGCTTCAATCTCCAG
GCCATGCACGACATTCTTTATCTGCGAAACAACTTTACGCAGTACGATCA
CCATGACTATCCGGGCGTGGTTCCACGCACCTTCATCGGCCCATTGGTGG
TGTCCATTATCTCTGCCCCGTTTGTCCTGCTCTTCGAGACCCTTAGCATC
AACAAGTTCTGGGCCCAATATGTAGTGCGCCTTGTCTTGGCTGGGGCCAT
CTCTGTGGCCTGGAACAGCCTACGGCAGGCGGTGACAAAGATTTACGGAG
TTGAGGTCCGCCTGTGGTTCACAGCCATCACTATTACGCAGTTCCACTTC
ATGTTCTACATGACTAGGCCTCTGCCCAATATCTTTGCCCTGCCGATAGT
GCTCTTTGCCATTGCCTATTGGCTACGCGACCAGCACAAGCCATTCATCA
TCTGCTCTGGTATATCCATTCTCGTCTTTCGATCCGAGTTGGCGTTATTT
TTGGGTATTTTGCTGGTGGTGAGCCTCCTACGGCGAAAAGTTTCCATTGA
CGGGCTACTCAAAGTTGCACTGCCGGCGGGCGTCTGCATTTTGGCTGCCA
CAGTGCTGGTGGACTCGTTCTTTTGGCGCCGCCTGCTTTGGCCCGAGGGT
GAGGTGCTATGGTACAACACCGTACTCAATAAGAGCTCCAACTGGGGTAC
CTCGCCTTTTCTATGGTACTTTTACTCCGCCCTGCCACGTGCCATGGGTG
CATCGCTGGTGCTCGTGCCCATCGGCGTCGCATTGGAGCCACGTATTCGG
CCATTGGTCCTGTCGGCTCTCCTCTTTGCCTTTTGTACTCCATTCTGCCG
CACAAGGAGCTGCGCTTCATCATCTAAGTGTTTCAGTTCTCA
BO12052.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:36:08
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8412-PA | 2037 | CG8412-RA | 1..862 | 17..878 | 4285 | 99.8 | Plus |
CG8412-PA | 2037 | CG8412-RA | 864..919 | 879..934 | 255 | 98.2 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 11:14:50
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8412-RA | 2527 | CG8412-RA | 387..1316 | 15..942 | 4570 | 99.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 11:14:45
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 9757702..9758034 | 603..934 | 1600 | 99.4 | Plus |
3R | 32079331 | 3R | 9757253..9757429 | 273..449 | 885 | 100 | Plus |
3R | 32079331 | 3R | 9757494..9757650 | 448..604 | 785 | 100 | Plus |
3R | 32079331 | 3R | 9757062..9757197 | 140..275 | 665 | 99.3 | Plus |
3R | 32079331 | 3R | 9756877..9757004 | 15..142 | 640 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-12 11:14:48 has no hits.
BO12052.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:24:37 Download gff for
BO12052.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8412-PA | 1..927 | 17..941 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 04:55:34 Download gff for
BO12052.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8412-PA | 1..927 | 17..941 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 06:29:01 Download gff for
BO12052.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8412-RA | 387..1315 | 15..941 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 13:25:01 Download gff for
BO12052.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8412-RA | 387..1315 | 15..941 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 13:25:01 Download gff for
BO12052.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 9756877..9757004 | 15..142 | 100 | -> | Plus |
3R | 9757065..9757197 | 143..275 | 99 | -> | Plus |
3R | 9757256..9757429 | 276..449 | 100 | -> | Plus |
3R | 9757496..9757649 | 450..603 | 100 | -> | Plus |
3R | 9757703..9758042 | 604..941 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 06:29:01 Download gff for
BO12052.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 5582599..5582726 | 15..142 | 100 | -> | Plus |
arm_3R | 5582787..5582919 | 143..275 | 99 | -> | Plus |
arm_3R | 5582978..5583151 | 276..449 | 100 | -> | Plus |
arm_3R | 5583218..5583371 | 450..603 | 100 | -> | Plus |
arm_3R | 5583425..5583764 | 604..941 | 99 | | Plus |
BO12052.complete Sequence
2068 bp assembled on 2008-01-17
GenBank Submission: FJ632293
> BO12052.complete
GAAGTTATCAGTCGACATGGACATCCTAATCTTTGTGACGGCGGCGGCCC
ATTTGGTCTACACGCCCTTTACGAAAGTGGAGGAGAGCTTCAATCTCCAG
GCCATGCACGACATTCTTTATCTGCGAAACAACTTTACGCAGTACGATCA
CCATGACTATCCGGGCGTGGTTCCACGCACCTTCATCGGCCCATTGGTGG
TGTCCATTATCTCTGCCCCGTTTGTCCTGCTCTTCGAGACCCTTAGCATC
AACAAGTTCTGGGCCCAATATGTAGTGCGCCTTGTCTTGGCTGGGGCCAT
CTCTGTGGCCTGGAACAGCCTACGGCAGGCGGTGACAAAGATTTACGGAG
TTGAGGTCCGCCTGTGGTTCACAGCCATCACTATTACGCAGTTCCACTTC
ATGTTCTACATGACTAGGCCTCTGCCCAATATCTTTGCCCTGCCGATAGT
GCTCTTTGCCATTGCCTATTGGCTACGCGACCAGCACAAGCCATTCATCA
TCTGCTCTGGTATATCCATTCTCGTCTTTCGATCCGAGTTGGCGTTATTT
TTGGGTATTTTGCTGGTGGTGAGCCTCCTACGGCGAAAAGTTTCCATTGA
CGGGCTACTCAAAGTTGCACTGCCGGCGGGCGTCTGCATTTTGGCTGCCA
CAGTGCTGGTGGACTCGTTCTTTTGGCGCCGCCTGCTTTGGCCCGAGGGT
GAGGTGCTATGGTACAACACCGTACTCAATAAGAGCTCCAACTGGGGTAC
CTCGCCTTTTCTATGGTACTTTTACTCCGCCCTGCCACGTGCCATGGGTG
CATCGCTGGTGCTCGTGCCCATCGGCGTCGCATTGGAGCCACGTATTCGG
CCATTGGTCCTGTCGGCTCTCCTCTTTGTCCTTTTGTACTCCATTCTGCC
GCACAAGGAGCTGCGCTTCATCATCTACGTGTTTCCAGTTCTCAACATTG
CTGCGGCTTGCGCATGCCAACGAATTTGGATGAACAGCGCCAAGTCAACG
TGGCATAGCTTTCTGGCGCTCGCCTGTGGAGCCCATCTCCTGCTAAATGT
CTTTATAACGCTCTTCCTGCTTGTCATTTCGGGCACCAACTATCCGGGCG
GAGCAGCCCTCTCCCGATTGCATCGCTTGGAAGCTGGCACCTCAAACGTT
TCCGTTCACATTTCCAACTTGGCCGCCCAGAGCGGCGTGTCGCGTTTTAT
GGAAATAAATAATGAATGGACTTACAGCAAGGACGAGACAATGAACTATA
CCCAGGCGGATTTGGTTGCATACACACATCTTTTGGTCGAGGCGAAGAAC
AAGCAAAACACTGAACTATGGGCATCGCTCCAAAACGAATTCGATACGCT
AGAGTTTATTGACTGCTTCAACAGCATCGGCATTCAATACAATTCTCTGC
TGCCGGTGCGAATAAAGACGAAGCCTTGCATTGGTATACTTAAAAAGAGA
CCAGTGGCTCCAAAAGAGGCATCAAAAACAAAAGAGAAAATAGCAAAAAC
TAAGACATACCCGGTGGAAAAAGAAACGTTATTAGCTCCTGTTAAAGAAT
TTCCAAAAGTGATAGGAGATCCGAAAATGAAATCCAGGTTACAAGTCGAT
GCGGATGATGATGATGGCATCGTGTCCACTGTGGAGGAAATGTCGCTAGA
ACTGGAAACGGATACTGAGCCCCATGCTGGGGCAGAGACCATCGAAACGC
CCTTGAAGGAGATCAATTTCCAGGAGCTGAGAACCCTCGCCTTGGGACAG
GCAACCAAGAAGTCGAGAGCAGCCACCAAGATGAAGATTCGACAAATTAT
CGAGCAGCACTACCGCGCCAAGGGCAAACAAATCGAAAACGACTCCGCAG
AGACCCAAAAAACGCAAGGAAAGGCTGGATTACGGCAATCCGTAAAGTCC
ATCATAAAGCAGGAGAAGATCAAGGAAATGATCGAGCAGATCGCTACGAT
GGATCTGACACGCATCTGCGATTTGGAAAGGACTTCGACCAAAGATTGCT
TAAAACAGGTCATAGACAAAATAGATGACAGCGAGGGTTTGAAATCCAAA
GCAAGCTTTCTAGACCAT
BO12052.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 14:42:44
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8412-RA | 2037 | CG8412-PA | 1..2034 | 17..2050 | 10155 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 14:42:45
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8412-RA | 2527 | CG8412-RA | 387..2422 | 15..2050 | 10165 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 14:42:42
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 9758134..9759208 | 976..2050 | 5375 | 100 | Plus |
3R | 32079331 | 3R | 9757702..9758074 | 603..975 | 1865 | 100 | Plus |
3R | 32079331 | 3R | 9757253..9757429 | 273..449 | 885 | 100 | Plus |
3R | 32079331 | 3R | 9757494..9757650 | 448..604 | 785 | 100 | Plus |
3R | 32079331 | 3R | 9757062..9757197 | 140..275 | 665 | 99.3 | Plus |
3R | 32079331 | 3R | 9756877..9757004 | 15..142 | 640 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-26 14:42:43 has no hits.
BO12052.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 13:59:44 Download gff for
BO12052.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8412-RA | 1..2037 | 17..2053 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-07-28 15:36:01 Download gff for
BO12052.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8412-RA | 387..2420 | 17..2052 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 23:40:59 Download gff for
BO12052.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8412-RA | 389..2422 | 17..2052 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 13:59:44 Download gff for
BO12052.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8412-RA | 385..2426 | 15..2054 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 15:58:48 Download gff for
BO12052.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8412-RA | 389..2422 | 17..2052 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 15:58:48 Download gff for
BO12052.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 9757065..9757197 | 143..275 | 99 | -> | Plus |
3R | 9757256..9757429 | 276..449 | 100 | -> | Plus |
3R | 9757496..9757649 | 450..603 | 100 | -> | Plus |
3R | 9756879..9757004 | 17..142 | 100 | -> | Plus |
3R | 9757703..9758074 | 604..975 | 100 | -> | Plus |
3R | 9758134..9759208 | 976..2052 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 23:40:59 Download gff for
BO12052.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 5582601..5582726 | 17..142 | 100 | -> | Plus |
arm_3R | 5582787..5582919 | 143..275 | 99 | -> | Plus |
arm_3R | 5582978..5583151 | 276..449 | 100 | -> | Plus |
arm_3R | 5583218..5583371 | 450..603 | 100 | -> | Plus |
arm_3R | 5583425..5583796 | 604..975 | 100 | -> | Plus |
arm_3R | 5583856..5584930 | 976..2052 | 99 | | Plus |
BO12052.pep Sequence
Translation from 16 to 2068
> BO12052.pep
MDILIFVTAAAHLVYTPFTKVEESFNLQAMHDILYLRNNFTQYDHHDYPG
VVPRTFIGPLVVSIISAPFVLLFETLSINKFWAQYVVRLVLAGAISVAWN
SLRQAVTKIYGVEVRLWFTAITITQFHFMFYMTRPLPNIFALPIVLFAIA
YWLRDQHKPFIICSGISILVFRSELALFLGILLVVSLLRRKVSIDGLLKV
ALPAGVCILAATVLVDSFFWRRLLWPEGEVLWYNTVLNKSSNWGTSPFLW
YFYSALPRAMGASLVLVPIGVALEPRIRPLVLSALLFVLLYSILPHKELR
FIIYVFPVLNIAAACACQRIWMNSAKSTWHSFLALACGAHLLLNVFITLF
LLVISGTNYPGGAALSRLHRLEAGTSNVSVHISNLAAQSGVSRFMEINNE
WTYSKDETMNYTQADLVAYTHLLVEAKNKQNTELWASLQNEFDTLEFIDC
FNSIGIQYNSLLPVRIKTKPCIGILKKRPVAPKEASKTKEKIAKTKTYPV
EKETLLAPVKEFPKVIGDPKMKSRLQVDADDDDGIVSTVEEMSLELETDT
EPHAGAETIETPLKEINFQELRTLALGQATKKSRAATKMKIRQIIEQHYR
AKGKQIENDSAETQKTQGKAGLRQSVKSIIKQEKIKEMIEQIATMDLTRI
CDLERTSTKDCLKQVIDKIDDSEGLKSKASFLDH
BO12052.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 02:26:52
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8412-PA | 678 | CG8412-PA | 1..678 | 1..678 | 3467 | 100 | Plus |