Clone BO12052 Report

Search the DGRC for BO12052

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:120
Well:52
Vector:pDNR-Dual
Associated Gene/TranscriptCG8412-RA
Protein status:BO12052.pep:
Sequenced Size:2068

Clone Sequence Records

BO12052.3prime Sequence

902 bp (775 high quality bases) assembled on 2006-04-20

> BO12052.3prime
ATGGTCTAGAAAGCTTGCTTTGGATTTCAAACCCTCGCTGTCATCTATTT
TGTCTATGACCTGTTTTAAGCAATCTTTGGTCGAAGTCCTTTCCAAATCG
CAGATGCGTGTCAGATCCATCGTAGCGATCTGCTCGATCATTTCCTTGAT
CTTCTCCTGCTTTATGATGGACTTTACGGATTGCCGTAATCCAGCCTTTC
CTTGCGTTTTTTGGGTCTCTGCGGAGTCGTTTTCGATTTGTTTGCCCTTG
GCGCGGTAGTGCTGCTCGATAATTTGTCGAATCTTCATCTTGGTGGCTGC
TCTCGACTTCTTGGTTGCCTGTCCCAAGGCGAGGGTTCTCAGCTCCTGGA
AATTGATCTCCTTCAAGGGCGTTTCGATGGTCTCTGCCCCAGCATGGGGC
TCAGTATCCGTTTCCAGTTCTAGCGACATTTCCTCCACAGTGGACACGAT
GCCATCATCATCATCCGCATCGACTTGTAACCTGGATTTCATTTTCGGAT
CTCCTATCACTTTTGGAAATTCTTTAACAGGAGCTAATAACGTTTCTTTT
TCCACCGGGTATGTCTTAGTTTTTGCTATTTTCTCTTTTGTTTTTGATGC
CTCTTTTGGAGCCACTGGTCTCTTTTTAAGTATACCAATGCAAGGCTTCG
TCTTTATTCGCACCGGCAGCAGAGAATTGTATTGAATGCCGATGCTGTTG
AAGCAGTCAATAAACTCTAGCGTATCGAATTCGTTTTGGAGCGATGCCCA
TAGTTCCGTGTTTTGCTTGTTCTTCGCCTCGACCAAAAGATGTGTGTATG
CAACCAAATCCGCCTGGGTATAGTTCATTGTCTCGTCCTTGCTGTAAGTC
CATTCATTATTATTTTCCTAAAACGCGACACGCCGCTCTGGGCGGCCAGT
TG

BO12052.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:36:07
Subject Length Description Subject Range Query Range Score Percent Strand
CG8412-PA 2037 CG8412-RA 1192..2034 861..19 4190 99.8 Minus
CG8412-PA 2037 CG8412-RA 1154..1183 898..869 150 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-02 17:48:16
Subject Length Description Subject Range Query Range Score Percent Strand
CG8412-RA 2527 CG8412-RA 1542..2422 898..19 4335 99.5 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-02 17:48:08
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 9758328..9759208 898..19 4310 99.5 Minus
Blast to na_te.dros performed on 2015-02-02 17:48:12 has no hits.

BO12052.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:24:36 Download gff for BO12052.3prime
Subject Subject Range Query Range Percent Splice Strand
CG8412-PA 1149..2037 16..902 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 04:55:32 Download gff for BO12052.3prime
Subject Subject Range Query Range Percent Splice Strand
CG8412-PA 1149..2037 16..902 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-08 17:27:49 Download gff for BO12052.3prime
Subject Subject Range Query Range Percent Splice Strand
CG8412-RA 1537..2428 15..902 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-02 20:48:32 Download gff for BO12052.3prime
Subject Subject Range Query Range Percent Splice Strand
CG8412-RA 1537..2428 15..902 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-02 20:48:32 Download gff for BO12052.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 9758323..9759214 15..902 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-08 17:27:49 Download gff for BO12052.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 5584045..5584936 15..902 99   Minus

BO12052.5prime Sequence

942 bp (844 high quality bases) assembled on 2006-04-18

> BO12052.5prime
GAAGTTATCAGTCGACATGGACATCCTAATCTTTGTGACGGCGGCGGCCC
ATTTGGTCTACACGCCCTTTACGAAAGTGGAGGAGAGCTTCAATCTCCAG
GCCATGCACGACATTCTTTATCTGCGAAACAACTTTACGCAGTACGATCA
CCATGACTATCCGGGCGTGGTTCCACGCACCTTCATCGGCCCATTGGTGG
TGTCCATTATCTCTGCCCCGTTTGTCCTGCTCTTCGAGACCCTTAGCATC
AACAAGTTCTGGGCCCAATATGTAGTGCGCCTTGTCTTGGCTGGGGCCAT
CTCTGTGGCCTGGAACAGCCTACGGCAGGCGGTGACAAAGATTTACGGAG
TTGAGGTCCGCCTGTGGTTCACAGCCATCACTATTACGCAGTTCCACTTC
ATGTTCTACATGACTAGGCCTCTGCCCAATATCTTTGCCCTGCCGATAGT
GCTCTTTGCCATTGCCTATTGGCTACGCGACCAGCACAAGCCATTCATCA
TCTGCTCTGGTATATCCATTCTCGTCTTTCGATCCGAGTTGGCGTTATTT
TTGGGTATTTTGCTGGTGGTGAGCCTCCTACGGCGAAAAGTTTCCATTGA
CGGGCTACTCAAAGTTGCACTGCCGGCGGGCGTCTGCATTTTGGCTGCCA
CAGTGCTGGTGGACTCGTTCTTTTGGCGCCGCCTGCTTTGGCCCGAGGGT
GAGGTGCTATGGTACAACACCGTACTCAATAAGAGCTCCAACTGGGGTAC
CTCGCCTTTTCTATGGTACTTTTACTCCGCCCTGCCACGTGCCATGGGTG
CATCGCTGGTGCTCGTGCCCATCGGCGTCGCATTGGAGCCACGTATTCGG
CCATTGGTCCTGTCGGCTCTCCTCTTTGCCTTTTGTACTCCATTCTGCCG
CACAAGGAGCTGCGCTTCATCATCTAAGTGTTTCAGTTCTCA

BO12052.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:36:08
Subject Length Description Subject Range Query Range Score Percent Strand
CG8412-PA 2037 CG8412-RA 1..862 17..878 4285 99.8 Plus
CG8412-PA 2037 CG8412-RA 864..919 879..934 255 98.2 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 11:14:50
Subject Length Description Subject Range Query Range Score Percent Strand
CG8412-RA 2527 CG8412-RA 387..1316 15..942 4570 99.6 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 11:14:45
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 9757702..9758034 603..934 1600 99.4 Plus
3R 32079331 3R 9757253..9757429 273..449 885 100 Plus
3R 32079331 3R 9757494..9757650 448..604 785 100 Plus
3R 32079331 3R 9757062..9757197 140..275 665 99.3 Plus
3R 32079331 3R 9756877..9757004 15..142 640 100 Plus
Blast to na_te.dros performed on 2015-02-12 11:14:48 has no hits.

BO12052.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:24:37 Download gff for BO12052.5prime
Subject Subject Range Query Range Percent Splice Strand
CG8412-PA 1..927 17..941 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 04:55:34 Download gff for BO12052.5prime
Subject Subject Range Query Range Percent Splice Strand
CG8412-PA 1..927 17..941 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 06:29:01 Download gff for BO12052.5prime
Subject Subject Range Query Range Percent Splice Strand
CG8412-RA 387..1315 15..941 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 13:25:01 Download gff for BO12052.5prime
Subject Subject Range Query Range Percent Splice Strand
CG8412-RA 387..1315 15..941 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 13:25:01 Download gff for BO12052.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 9756877..9757004 15..142 100 -> Plus
3R 9757065..9757197 143..275 99 -> Plus
3R 9757256..9757429 276..449 100 -> Plus
3R 9757496..9757649 450..603 100 -> Plus
3R 9757703..9758042 604..941 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 06:29:01 Download gff for BO12052.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 5582599..5582726 15..142 100 -> Plus
arm_3R 5582787..5582919 143..275 99 -> Plus
arm_3R 5582978..5583151 276..449 100 -> Plus
arm_3R 5583218..5583371 450..603 100 -> Plus
arm_3R 5583425..5583764 604..941 99   Plus

BO12052.complete Sequence

2068 bp assembled on 2008-01-17

GenBank Submission: FJ632293

> BO12052.complete
GAAGTTATCAGTCGACATGGACATCCTAATCTTTGTGACGGCGGCGGCCC
ATTTGGTCTACACGCCCTTTACGAAAGTGGAGGAGAGCTTCAATCTCCAG
GCCATGCACGACATTCTTTATCTGCGAAACAACTTTACGCAGTACGATCA
CCATGACTATCCGGGCGTGGTTCCACGCACCTTCATCGGCCCATTGGTGG
TGTCCATTATCTCTGCCCCGTTTGTCCTGCTCTTCGAGACCCTTAGCATC
AACAAGTTCTGGGCCCAATATGTAGTGCGCCTTGTCTTGGCTGGGGCCAT
CTCTGTGGCCTGGAACAGCCTACGGCAGGCGGTGACAAAGATTTACGGAG
TTGAGGTCCGCCTGTGGTTCACAGCCATCACTATTACGCAGTTCCACTTC
ATGTTCTACATGACTAGGCCTCTGCCCAATATCTTTGCCCTGCCGATAGT
GCTCTTTGCCATTGCCTATTGGCTACGCGACCAGCACAAGCCATTCATCA
TCTGCTCTGGTATATCCATTCTCGTCTTTCGATCCGAGTTGGCGTTATTT
TTGGGTATTTTGCTGGTGGTGAGCCTCCTACGGCGAAAAGTTTCCATTGA
CGGGCTACTCAAAGTTGCACTGCCGGCGGGCGTCTGCATTTTGGCTGCCA
CAGTGCTGGTGGACTCGTTCTTTTGGCGCCGCCTGCTTTGGCCCGAGGGT
GAGGTGCTATGGTACAACACCGTACTCAATAAGAGCTCCAACTGGGGTAC
CTCGCCTTTTCTATGGTACTTTTACTCCGCCCTGCCACGTGCCATGGGTG
CATCGCTGGTGCTCGTGCCCATCGGCGTCGCATTGGAGCCACGTATTCGG
CCATTGGTCCTGTCGGCTCTCCTCTTTGTCCTTTTGTACTCCATTCTGCC
GCACAAGGAGCTGCGCTTCATCATCTACGTGTTTCCAGTTCTCAACATTG
CTGCGGCTTGCGCATGCCAACGAATTTGGATGAACAGCGCCAAGTCAACG
TGGCATAGCTTTCTGGCGCTCGCCTGTGGAGCCCATCTCCTGCTAAATGT
CTTTATAACGCTCTTCCTGCTTGTCATTTCGGGCACCAACTATCCGGGCG
GAGCAGCCCTCTCCCGATTGCATCGCTTGGAAGCTGGCACCTCAAACGTT
TCCGTTCACATTTCCAACTTGGCCGCCCAGAGCGGCGTGTCGCGTTTTAT
GGAAATAAATAATGAATGGACTTACAGCAAGGACGAGACAATGAACTATA
CCCAGGCGGATTTGGTTGCATACACACATCTTTTGGTCGAGGCGAAGAAC
AAGCAAAACACTGAACTATGGGCATCGCTCCAAAACGAATTCGATACGCT
AGAGTTTATTGACTGCTTCAACAGCATCGGCATTCAATACAATTCTCTGC
TGCCGGTGCGAATAAAGACGAAGCCTTGCATTGGTATACTTAAAAAGAGA
CCAGTGGCTCCAAAAGAGGCATCAAAAACAAAAGAGAAAATAGCAAAAAC
TAAGACATACCCGGTGGAAAAAGAAACGTTATTAGCTCCTGTTAAAGAAT
TTCCAAAAGTGATAGGAGATCCGAAAATGAAATCCAGGTTACAAGTCGAT
GCGGATGATGATGATGGCATCGTGTCCACTGTGGAGGAAATGTCGCTAGA
ACTGGAAACGGATACTGAGCCCCATGCTGGGGCAGAGACCATCGAAACGC
CCTTGAAGGAGATCAATTTCCAGGAGCTGAGAACCCTCGCCTTGGGACAG
GCAACCAAGAAGTCGAGAGCAGCCACCAAGATGAAGATTCGACAAATTAT
CGAGCAGCACTACCGCGCCAAGGGCAAACAAATCGAAAACGACTCCGCAG
AGACCCAAAAAACGCAAGGAAAGGCTGGATTACGGCAATCCGTAAAGTCC
ATCATAAAGCAGGAGAAGATCAAGGAAATGATCGAGCAGATCGCTACGAT
GGATCTGACACGCATCTGCGATTTGGAAAGGACTTCGACCAAAGATTGCT
TAAAACAGGTCATAGACAAAATAGATGACAGCGAGGGTTTGAAATCCAAA
GCAAGCTTTCTAGACCAT

BO12052.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 14:42:44
Subject Length Description Subject Range Query Range Score Percent Strand
CG8412-RA 2037 CG8412-PA 1..2034 17..2050 10155 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 14:42:45
Subject Length Description Subject Range Query Range Score Percent Strand
CG8412-RA 2527 CG8412-RA 387..2422 15..2050 10165 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 14:42:42
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 9758134..9759208 976..2050 5375 100 Plus
3R 32079331 3R 9757702..9758074 603..975 1865 100 Plus
3R 32079331 3R 9757253..9757429 273..449 885 100 Plus
3R 32079331 3R 9757494..9757650 448..604 785 100 Plus
3R 32079331 3R 9757062..9757197 140..275 665 99.3 Plus
3R 32079331 3R 9756877..9757004 15..142 640 100 Plus
Blast to na_te.dros performed on 2014-11-26 14:42:43 has no hits.

BO12052.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 13:59:44 Download gff for BO12052.complete
Subject Subject Range Query Range Percent Splice Strand
CG8412-RA 1..2037 17..2053 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-07-28 15:36:01 Download gff for BO12052.complete
Subject Subject Range Query Range Percent Splice Strand
CG8412-RA 387..2420 17..2052 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 23:40:59 Download gff for BO12052.complete
Subject Subject Range Query Range Percent Splice Strand
CG8412-RA 389..2422 17..2052 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 13:59:44 Download gff for BO12052.complete
Subject Subject Range Query Range Percent Splice Strand
CG8412-RA 385..2426 15..2054 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 15:58:48 Download gff for BO12052.complete
Subject Subject Range Query Range Percent Splice Strand
CG8412-RA 389..2422 17..2052 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 15:58:48 Download gff for BO12052.complete
Subject Subject Range Query Range Percent Splice Strand
3R 9757065..9757197 143..275 99 -> Plus
3R 9757256..9757429 276..449 100 -> Plus
3R 9757496..9757649 450..603 100 -> Plus
3R 9756879..9757004 17..142 100 -> Plus
3R 9757703..9758074 604..975 100 -> Plus
3R 9758134..9759208 976..2052 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 23:40:59 Download gff for BO12052.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 5582601..5582726 17..142 100 -> Plus
arm_3R 5582787..5582919 143..275 99 -> Plus
arm_3R 5582978..5583151 276..449 100 -> Plus
arm_3R 5583218..5583371 450..603 100 -> Plus
arm_3R 5583425..5583796 604..975 100 -> Plus
arm_3R 5583856..5584930 976..2052 99   Plus

BO12052.pep Sequence

Translation from 16 to 2068

> BO12052.pep
MDILIFVTAAAHLVYTPFTKVEESFNLQAMHDILYLRNNFTQYDHHDYPG
VVPRTFIGPLVVSIISAPFVLLFETLSINKFWAQYVVRLVLAGAISVAWN
SLRQAVTKIYGVEVRLWFTAITITQFHFMFYMTRPLPNIFALPIVLFAIA
YWLRDQHKPFIICSGISILVFRSELALFLGILLVVSLLRRKVSIDGLLKV
ALPAGVCILAATVLVDSFFWRRLLWPEGEVLWYNTVLNKSSNWGTSPFLW
YFYSALPRAMGASLVLVPIGVALEPRIRPLVLSALLFVLLYSILPHKELR
FIIYVFPVLNIAAACACQRIWMNSAKSTWHSFLALACGAHLLLNVFITLF
LLVISGTNYPGGAALSRLHRLEAGTSNVSVHISNLAAQSGVSRFMEINNE
WTYSKDETMNYTQADLVAYTHLLVEAKNKQNTELWASLQNEFDTLEFIDC
FNSIGIQYNSLLPVRIKTKPCIGILKKRPVAPKEASKTKEKIAKTKTYPV
EKETLLAPVKEFPKVIGDPKMKSRLQVDADDDDGIVSTVEEMSLELETDT
EPHAGAETIETPLKEINFQELRTLALGQATKKSRAATKMKIRQIIEQHYR
AKGKQIENDSAETQKTQGKAGLRQSVKSIIKQEKIKEMIEQIATMDLTRI
CDLERTSTKDCLKQVIDKIDDSEGLKSKASFLDH

BO12052.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 02:26:52
Subject Length Description Subject Range Query Range Score Percent Strand
CG8412-PA 678 CG8412-PA 1..678 1..678 3467 100 Plus