Clone Sequence Records
BO12054.3prime Sequence
693 bp (692 high quality bases) assembled on 2006-04-20
> BO12054.3prime
ATGGTCTAGAAAGCTTGCGTGACGCAGGCGACTCAGGATGTTGGCGGGTA
GGTAGTTGCTCTGGGGCACCTGTTGAGGAGTAACGCGTGCTGGAGCAGCT
CCCTGGGATGCAAAGTTGATGGCATTAGCCACGCCACCGTTGATGGACTG
GCTGGAGCCGCCGAGTTGATCGTACTGCGATTGGATTGCCCGCTGGGCAT
TGGCAGCATCCTCAGGTGTCCTGTACTTGACGAAGTGCACCTCGGGCTTC
TTGTTGGCATTCTGGCGCACGGCATTGAATTTCTGGGCCAGCTCGTTGAT
ATCAGTCTGTTTGTGCAGCACATATATGGCAGTCTGCTGCTGGGCCGCCT
GTTTAGCCAGGGCCAAAACGGCATTCTCGTAGCCACGGTTCTCCGGCGAC
TTGATGAAGATGACGCGAATGTTCTTCTTGACCGAGGCAAGAGCCCTCTG
GAGAGCAGCCTTATCCTCGAAGTCGTCATCGTTGGCATAGAAGCTGTAGA
ACTCCTTGTGAACTGACGCCTGGGGAGCGGCACTATAGCTAACTGGTCCC
GCCAGTGCAGGGACTGGGGATACACCACTGCCCCCAATACTGGTTGTCGC
ACCTTGTCCGTAATTATATCCGGACAAGCTACCGGCACTTGCCGCTGCCA
CAATGCTTAGAATAATGAGGGCACGCATGGTCGACTGATAACT
BO12054.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:36:10
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG14240-PA | 663 | CG14240-RA | 1..660 | 678..19 | 3300 | 100 | Minus |
| CG6452-PA | 690 | CG6452-RA | 442..516 | 243..169 | 225 | 92 | Minus |
| CG5476-PA | 930 | CG5476-RA | 689..723 | 257..223 | 150 | 97.1 | Minus |
| CG6460-PA | 744 | CG6460-RA | 507..540 | 256..223 | 145 | 97 | Minus |
| CG6478-PA | 861 | CG6478-RA | 627..660 | 256..223 | 145 | 97 | Minus |
| CG5468-PA | 867 | CG5468-RA | 639..672 | 256..223 | 145 | 97 | Minus |
| CG5471-PA | 924 | CG5471-RA | 615..648 | 256..223 | 145 | 97 | Minus |
| CG6447-PB | 840 | CG6447-RB | 610..642 | 255..223 | 140 | 96.9 | Minus |
| CG6447-PA | 858 | CG6447-RA | 628..660 | 255..223 | 140 | 96.9 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 03:54:52
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| TwdlP-RA | 757 | CG14240-RA | 41..700 | 678..19 | 3300 | 100 | Minus |
| TwdlO-RA | 807 | CG6452-RA | 309..620 | 417..106 | 645 | 80.4 | Minus |
| TwdlN-RA | 1088 | CG5476-RA | 594..902 | 414..106 | 480 | 77.8 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 03:54:50
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 26620665..26621324 | 19..678 | 3300 | 100 | Plus |
| 3R | 32079331 | 3R | 26626119..26626430 | 106..417 | 645 | 80.4 | Plus |
| 3R | 32079331 | 3R | 26632462..26632770 | 414..106 | 480 | 77 | Minus |
| 3R | 32079331 | 3R | 26624784..26625073 | 128..417 | 460 | 77.2 | Plus |
| 3R | 32079331 | 3R | 26619721..26620004 | 417..134 | 445 | 77.1 | Minus |
| 3R | 32079331 | 3R | 26622700..26622963 | 154..417 | 435 | 77.7 | Plus |
| 3R | 32079331 | 3R | 26628090..26628362 | 145..417 | 405 | 76.6 | Plus |
| 3R | 32079331 | 3R | 26630310..26630560 | 417..167 | 385 | 76.9 | Minus |
| 3R | 32079331 | 3R | 26634193..26634450 | 411..154 | 270 | 73.6 | Minus |
| 3R | 32079331 | 3R | 26640630..26640705 | 257..182 | 185 | 82.9 | Minus |
Blast to na_te.dros performed on 2015-02-12 03:54:52 has no hits.
BO12054.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:24:40 Download gff for
BO12054.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14240-PA | 1..663 | 18..678 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 04:55:39 Download gff for
BO12054.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14240-PA | 1..663 | 18..678 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 22:56:19 Download gff for
BO12054.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| TwdlP-RA | 30..700 | 19..689 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 06:49:55 Download gff for
BO12054.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| TwdlP-RA | 30..700 | 19..689 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 06:49:55 Download gff for
BO12054.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 26620665..26621335 | 19..689 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 22:56:19 Download gff for
BO12054.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 22446387..22447057 | 19..689 | 99 | | Plus |
BO12054.5prime Sequence
693 bp (692 high quality bases) assembled on 2006-04-18
> BO12054.5prime
GAAGTTATCAGTCGACCATGCGTGCCCTCATTATTCTAAGCATTGTGGCA
GCGGCAAGTGCCGGTAGCTTGTCCGGATATAATTACGGACAAGGTGCGAC
AACCAGTATTGGGGGCAGTGGTGTATCCCCAGTCCCTGCACTGGCGGGAC
CAGTTAGCTATAGTGCCGCTCCCCAGGCGTCAGTTCACAAGGAGTTCTAC
AGCTTCTATGCCAACGATGACGACTTCGAGGATAAGGCTGCTCTCCAGAG
GGCTCTTGCCTCGGTCAAGAAGAACATTCGCGTCATCTTCATCAAGTCGC
CGGAGAACCGTGGCTACGAGAATGCCGTTTTGGCCCTGGCTAAACAGGCG
GCCCAGCAGCAGACTGCCATATATGTGCTGCACAAACAGACTGATATCAA
CGAGCTGGCCCAGAAATTCAATGCCGTGCGCCAGAATGCCAACAAGAAGC
CCGAGGTGCACTTCGTCAAGTACAGGACACCTGAGGATGCTGCCAATGCC
CAGCGGGCAATCCAATCGCAGTACGATCAACTCGGCGGCTCCAGCCAGTC
CATCAACGGTGGCGTGGCTAATGCCATCAACTTTGCATCCCAGGGAGCTG
CTCCAGCACGCGTTACTCCTCAACAGGTGCCCCAGAGCAACTACCTACCC
GCCAACATCCTGAGTCGCCTGCGTCACGCAAGCTTTCTAGACC
BO12054.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:36:11
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG14240-PA | 663 | CG14240-RA | 1..660 | 18..677 | 3300 | 100 | Plus |
| CG6452-PA | 690 | CG6452-RA | 442..516 | 453..527 | 225 | 92 | Plus |
| CG5476-PA | 930 | CG5476-RA | 689..723 | 439..473 | 150 | 97.1 | Plus |
| CG6460-PA | 744 | CG6460-RA | 507..540 | 440..473 | 145 | 97 | Plus |
| CG6478-PA | 861 | CG6478-RA | 627..660 | 440..473 | 145 | 97 | Plus |
| CG5468-PA | 867 | CG5468-RA | 639..672 | 440..473 | 145 | 97 | Plus |
| CG5471-PA | 924 | CG5471-RA | 615..648 | 440..473 | 145 | 97 | Plus |
| CG6447-PB | 840 | CG6447-RB | 610..642 | 441..473 | 140 | 96.9 | Plus |
| CG6447-PA | 858 | CG6447-RA | 628..660 | 441..473 | 140 | 96.9 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 02:01:37
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| TwdlP-RA | 757 | CG14240-RA | 41..700 | 18..677 | 3300 | 100 | Plus |
| TwdlO-RA | 807 | CG6452-RA | 309..620 | 279..590 | 645 | 80.4 | Plus |
| TwdlN-RA | 1088 | CG5476-RA | 594..902 | 282..590 | 480 | 77.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 02:01:31
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 26620665..26621324 | 677..18 | 3300 | 100 | Minus |
| 3R | 32079331 | 3R | 26626119..26626430 | 590..279 | 645 | 80.4 | Minus |
| 3R | 32079331 | 3R | 26632462..26632770 | 282..590 | 480 | 77 | Plus |
| 3R | 32079331 | 3R | 26624784..26625073 | 568..279 | 460 | 77.2 | Minus |
| 3R | 32079331 | 3R | 26619721..26620004 | 279..562 | 445 | 77.1 | Plus |
| 3R | 32079331 | 3R | 26622700..26622963 | 542..279 | 435 | 77.7 | Minus |
| 3R | 32079331 | 3R | 26628090..26628362 | 551..279 | 405 | 76.6 | Minus |
| 3R | 32079331 | 3R | 26630310..26630560 | 279..529 | 385 | 76.9 | Plus |
| 3R | 32079331 | 3R | 26634193..26634450 | 285..542 | 270 | 73.6 | Plus |
| 3R | 32079331 | 3R | 26640630..26640705 | 439..514 | 185 | 82.9 | Plus |
Blast to na_te.dros performed on 2015-02-13 02:01:34 has no hits.
BO12054.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:24:41 Download gff for
BO12054.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14240-PA | 1..663 | 18..678 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 04:55:40 Download gff for
BO12054.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14240-PA | 1..663 | 18..678 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 12:09:52 Download gff for
BO12054.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| TwdlP-RA | 30..700 | 7..677 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 03:31:11 Download gff for
BO12054.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| TwdlP-RA | 30..700 | 7..677 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 03:31:11 Download gff for
BO12054.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 26620665..26621335 | 7..677 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 12:09:52 Download gff for
BO12054.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 22446387..22447057 | 7..677 | 99 | | Minus |
BO12054.complete Sequence
695 bp assembled on 2011-06-28
GenBank Submission: KX793873
> BO12054.complete
GAAGTTATCAGTCGACCATGCGTGCCCTCATTATTCTAAGCATTGTGGCA
GCGGCAAGTGCCGGTAGCTTGTCCGGATATAATTACGGACAAGGTGCGAC
AACCAGTATTGGGGGCAGTGGTGTATCCCCAGTCCCTGCACTGGCGGGAC
CAGTTAGCTATAGTGCCGCTCCCCAGGCGTCAGTTCACAAGGAGTTCTAC
AGCTTCTATGCCAACGATGACGACTTCGAGGATAAGGCTGCTCTCCAGAG
GGCTCTTGCCTCGGTCAAGAAGAACATTCGCGTCATCTTCATCAAGTCGC
CGGAGAACCGTGGCTACGAGAATGCCGTTTTGGCCCTGGCTAAACAGGCG
GCCCAGCAGCAGACTGCCATATATGTGCTGCACAAACAGACTGATATCAA
CGAGCTGGCCCAGAAATTCAATGCCGTGCGCCAGAATGCCAACAAGAAGC
CCGAGGTGCACTTCGTCAAGTACAGGACACCTGAGGATGCTGCCAATGCC
CAGCGGGCAATCCAATCGCAGTACGATCAACTCGGCGGCTCCAGCCAGTC
CATCAACGGTGGCGTGGCTAATGCCATCAACTTTGCATCCCAGGGAGCTG
CTCCAGCACGCGTTACTCCTCAACAGGTGCCCCAGAGCAACTACCTACCC
GCCAACATCCTGAGTCGCCTGCGTCACGCAAGCTTTCTAGACCAT
BO12054.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 16:12:31
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| TwdlP-RA | 663 | CG14240-PA | 1..660 | 18..677 | 3300 | 100 | Plus |
| TwdlO-RA | 690 | CG6452-PA | 268..579 | 279..590 | 645 | 80.4 | Plus |
| TwdlN-RA | 930 | CG5476-PA | 532..840 | 282..590 | 480 | 77 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:12:32
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| TwdlP-RA | 757 | CG14240-RA | 41..700 | 18..677 | 3300 | 100 | Plus |
| TwdlO-RA | 807 | CG6452-RA | 309..620 | 279..590 | 645 | 80.4 | Plus |
| TwdlN-RA | 1088 | CG5476-RA | 594..902 | 282..590 | 480 | 77 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 16:12:29
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 26620665..26621324 | 677..18 | 3300 | 100 | Minus |
| 3R | 32079331 | 3R | 26626119..26626430 | 590..279 | 645 | 80.4 | Minus |
| 3R | 32079331 | 3R | 26632462..26632770 | 282..590 | 480 | 77 | Plus |
| 3R | 32079331 | 3R | 26624784..26625073 | 568..279 | 460 | 77.2 | Minus |
| 3R | 32079331 | 3R | 26619721..26620004 | 279..562 | 445 | 77.1 | Plus |
| 3R | 32079331 | 3R | 26622700..26622963 | 542..279 | 435 | 77.7 | Minus |
| 3R | 32079331 | 3R | 26628090..26628362 | 551..279 | 405 | 76.6 | Minus |
| 3R | 32079331 | 3R | 26630310..26630560 | 279..529 | 385 | 76.9 | Plus |
| 3R | 32079331 | 3R | 26634193..26634450 | 285..542 | 270 | 73.6 | Plus |
| 3R | 32079331 | 3R | 26640630..26640705 | 439..514 | 185 | 82.9 | Plus |
Blast to na_te.dros performed on 2014-11-26 16:12:30 has no hits.
BO12054.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-06-28 12:16:20 Download gff for
BO12054.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| TwdlP-RA | 36..696 | 17..679 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 01:54:57 Download gff for
BO12054.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| TwdlP-RA | 40..700 | 17..679 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:13:37 Download gff for
BO12054.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| TwdlP-RA | 40..700 | 17..679 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 17:13:37 Download gff for
BO12054.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 26620663..26621324 | 17..679 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 01:54:57 Download gff for
BO12054.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 22446385..22447046 | 17..679 | 99 | | Minus |
BO12054.pep Sequence
Translation from 17 to 695
> BO12054.pep
MRALIILSIVAAASAGSLSGYNYGQGATTSIGGSGVSPVPALAGPVSYSA
APQASVHKEFYSFYANDDDFEDKAALQRALASVKKNIRVIFIKSPENRGY
ENAVLALAKQAAQQQTAIYVLHKQTDINELAQKFNAVRQNANKKPEVHFV
KYRTPEDAANAQRAIQSQYDQLGGSSQSINGGVANAINFASQGAAPARVT
PQQVPQSNYLPANILSRLRHASFLDH
BO12054.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 06:50:33
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| TwdlP-PA | 220 | CG14240-PA | 1..220 | 1..220 | 1099 | 100 | Plus |
| TwdlN-PA | 309 | CG5476-PA | 107..307 | 18..220 | 641 | 63.2 | Plus |
| TwdlO-PA | 229 | CG6452-PA | 1..227 | 1..219 | 612 | 60 | Plus |
| TwdlL-PB | 279 | CG6447-PB | 69..277 | 8..217 | 604 | 59.7 | Plus |
| TwdlL-PA | 285 | CG6447-PA | 75..283 | 8..217 | 604 | 59.7 | Plus |
