Clone Sequence Records
BO12059.3prime Sequence
800 bp (799 high quality bases) assembled on 2006-04-20
> BO12059.3prime
ATGGTCTAGAAAGCTTGCTAGCCGATAATTGGTGGCTGGCGCCTTGCTGG
CGTTGCGCTTCTGGCCGAACACTTTCTTGCCCGGACTGTGCATGGCGGCA
TCATCGCCATCCGCGTCCTGCCCTACGCCGCCGCCACCGCCTCCTCCGCC
TGTGCAACAGATGCGCCGCTGCACCAGGCGAATGGGGCGGGTGAGGTCAA
TGGTGTCGCCGTGCTGGCGCAGTTCCGCCTCGGCCACGCACTCCATGTGC
CGCCACTGGCGAAGGCCAAGGACGAACGCATCCGTCACATTGGTTGCCGC
CTTCGATGACGTCTCGATGTGGCAGGCCACCTTCTGCTCCGCGCACCACT
GCTGCACTGCGTCGGAGCTCACCTGTCGCTTCTGCGCCGGAATGTCGTTC
TTATTTCCCACCACGATGAATGGAAACTTGTCCTGGTCCACATCTGCGTA
GTTGAGGAACTCATTGCGCCACACACCCAATCCCTTCAAGCTGTCCCGGT
CGTCGAGTGCGTAGCAGAGCAGACAGATGTCCGATCCTCTGTAGAACGGG
GTGCGTAGAGCCCGGAATCGCTCCTGGCCAGCGGTGTCCCATATCTGCAG
AGTGTAGCGCTCCCCGTCGACGACTATGTCCTTGTTCATGAACTCCACGC
CGATGGTGTGGAAGTTGTTCTCCTCGTAGCGATTGGCGACGAATCGGGTG
AGCAGGGCGGACTTGCCAACGCCTCCGTCGCCCAGTATGACGACCTTCAG
CAGCTTGGACTTCTGCGGCGGCCGCATGTTCGTCATGTCGACTGATAACT
BO12059.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:36:17
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9994-PA | 771 | Rab9-RA | 1..768 | 786..19 | 3815 | 99.8 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 22:58:04
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Rab9-RA | 1604 | CG9994-RA | 299..1066 | 786..19 | 3825 | 99.9 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 22:57:58
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 19434921..19435303 | 401..19 | 1900 | 99.7 | Minus |
2L | 23513712 | 2L | 19434665..19434861 | 596..400 | 985 | 100 | Minus |
2L | 23513712 | 2L | 19432872..19433063 | 786..595 | 960 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-10 22:58:01 has no hits.
BO12059.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:24:50 Download gff for
BO12059.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Rab9-PA | 1..771 | 16..786 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 04:55:51 Download gff for
BO12059.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9994-PA | 1..771 | 16..786 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 07:50:19 Download gff for
BO12059.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Rab9-RA | 291..1071 | 13..794 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 00:15:00 Download gff for
BO12059.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Rab9-RA | 291..1071 | 13..794 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 00:15:00 Download gff for
BO12059.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 19432864..19433063 | 595..794 | 98 | -> | Minus |
2L | 19434667..19434861 | 400..594 | 100 | -> | Minus |
2L | 19434923..19435308 | 13..399 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 07:50:19 Download gff for
BO12059.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 19432864..19433063 | 595..794 | 98 | -> | Minus |
arm_2L | 19434667..19434861 | 400..594 | 100 | -> | Minus |
arm_2L | 19434923..19435308 | 13..399 | 98 | | Minus |
BO12059.5prime Sequence
800 bp (799 high quality bases) assembled on 2006-04-18
> BO12059.5prime
GAAGTTATCAGTCGACATGACGAACATGCGGCCGCCGCAGAAGTCCAAGC
TGCTGAAGGTCGTCATACTGGGCGACGGAGGCGTTGGCAAGTCCGCCCTG
CTCACCCGATTCGTCGCCAATCGCTACGAGGAGAACAACTTCCACACCAT
CGGCGTGGAGTTCATGAACAAGGACATAGTCGTCGACGGGGAGCGCTACA
CTCTGCAGATATGGGACACCGCTGGCCAGGAGCGATTCCGGGCTCTACGC
ACCCCGTTCTACAGAGGATCGGACATCTGTCTGCTCTGCTACGCACTCGA
CGACCGGGACAGCTTGAAGGGATTGGGTGTGTGGCGCAATGAGTTCCTCA
ACTACGCAGATGTGGACCAGGACAAGTTTCCATTCATCGTGGTGGGAAAT
AAGAACGACATTCCGGCGCAGAAGCGACAGGTGAGCTCCGACGCAGTGCA
GCAGTGGTGCGCGGAGCAGAAGGTGGCCTGCCACATCGAGACGTCATCGA
AGGCGGCAACCAATGTGACGGATGCGTTCGTCCTTGGCCTTCGCCAGTGG
CGGCACATGGAGTGCGTGGCCGAGGCGGAACTGCGCCAGCACGGCGACAC
CATTGACCTCACCCGCCCCATTCGCCTGGTGCAGCGGCGCATCTGTTGCA
CAGGCGGAGGAGGCGGTGGCGGCGGCGTAGGGCAGGACGCGGATGGCGAT
GATGCCGCCATGCACAGTCCGGGCAAGAAAGTGTTCGGCCAGAAGCGCAA
CGCCAGCAAGGCGCCAGCCACCAATTATCGGCTAGCAAGCTTTCTAGACC
BO12059.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:36:17
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9994-PA | 771 | Rab9-RA | 1..768 | 17..784 | 3815 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 11:07:23
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Rab9-RA | 1604 | CG9994-RA | 299..1066 | 17..784 | 3825 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 11:07:19
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 19434921..19435303 | 402..784 | 1900 | 99.7 | Plus |
2L | 23513712 | 2L | 19434665..19434861 | 207..403 | 985 | 100 | Plus |
2L | 23513712 | 2L | 19432872..19433063 | 17..208 | 960 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-11 11:07:21 has no hits.
BO12059.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:24:51 Download gff for
BO12059.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Rab9-PA | 1..771 | 17..787 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 04:55:53 Download gff for
BO12059.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9994-PA | 1..771 | 17..787 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-24 16:42:52 Download gff for
BO12059.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Rab9-RA | 291..1071 | 9..790 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 12:40:16 Download gff for
BO12059.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Rab9-RA | 291..1071 | 9..790 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 12:40:16 Download gff for
BO12059.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 19434667..19434861 | 209..403 | 100 | -> | Plus |
2L | 19432864..19433063 | 9..208 | 98 | -> | Plus |
2L | 19434923..19435308 | 404..790 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 16:42:52 Download gff for
BO12059.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 19432864..19433063 | 9..208 | 98 | -> | Plus |
arm_2L | 19434667..19434861 | 209..403 | 100 | -> | Plus |
arm_2L | 19434923..19435308 | 404..790 | 98 | | Plus |
BO12059.complete Sequence
802 bp assembled on 2006-10-11
GenBank Submission: FJ632294
> BO12059.complete
GAAGTTATCAGTCGACATGACGAACATGCGGCCGCCGCAGAAGTCCAAGC
TGCTGAAGGTCGTCATACTGGGCGACGGAGGCGTTGGCAAGTCCGCCCTG
CTCACCCGATTCGTCGCCAATCGCTACGAGGAGAACAACTTCCACACCAT
CGGCGTGGAGTTCATGAACAAGGACATAGTCGTCGACGGGGAGCGCTACA
CTCTGCAGATATGGGACACCGCTGGCCAGGAGCGATTCCGGGCTCTACGC
ACCCCGTTCTACAGAGGATCGGACATCTGTCTGCTCTGCTACGCACTCGA
CGACCGGGACAGCTTGAAGGGATTGGGTGTGTGGCGCAATGAGTTCCTCA
ACTACGCAGATGTGGACCAGGACAAGTTTCCATTCATCGTGGTGGGAAAT
AAGAACGACATTCCGGCGCAGAAGCGACAGGTGAGCTCCGACGCAGTGCA
GCAGTGGTGCGCGGAGCAGAAGGTGGCCTGCCACATCGAGACGTCATCGA
AGGCGGCAACCAATGTGACGGATGCGTTCGTCCTTGGCCTTCGCCAGTGG
CGGCACATGGAGTGCGTGGCCGAGGCGGAACTGCGCCAGCACGGCGACAC
CATTGACCTCACCCGCCCCATTCGCCTGGTGCAGCGGCGCATCTGTTGCA
CAGGCGGAGGAGGCGGTGGCGGCGGCGTAGGGCAGGACGCGGATGGCGAT
GATGCCGCCATGCACAGTCCGGGCAAGAAAGTGTTCGGCCAGAAGCGCAA
CGCCAGCAAGGCGCCAGCCACCAATTATCGGCTAGCAAGCTTTCTAGACC
AT
BO12059.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 11:08:38
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Rab9-RA | 771 | CG9994-PA | 1..768 | 17..784 | 3825 | 99.9 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:08:39
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Rab9-RA | 1604 | CG9994-RA | 299..1066 | 17..784 | 3825 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 11:08:36
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 19434921..19435303 | 402..784 | 1900 | 99.7 | Plus |
2L | 23513712 | 2L | 19434665..19434861 | 207..403 | 985 | 100 | Plus |
2L | 23513712 | 2L | 19432872..19433063 | 17..208 | 960 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 11:08:37 has no hits.
BO12059.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 13:40:51 Download gff for
BO12059.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Rab9-RA | 1..771 | 17..787 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:03:40 Download gff for
BO12059.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Rab9-RA | 272..1052 | 9..790 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:45:13 Download gff for
BO12059.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Rab9-RA | 299..1066 | 17..786 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 13:40:51 Download gff for
BO12059.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Rab9-RA | 272..1052 | 9..790 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:39:43 Download gff for
BO12059.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Rab9-RA | 299..1066 | 17..786 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 11:39:43 Download gff for
BO12059.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 19434923..19435303 | 404..786 | 99 | | Plus |
2L | 19432872..19433063 | 17..208 | 100 | -> | Plus |
2L | 19434667..19434861 | 209..403 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:45:13 Download gff for
BO12059.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 19432872..19433063 | 17..208 | 100 | -> | Plus |
arm_2L | 19434667..19434861 | 209..403 | 100 | -> | Plus |
arm_2L | 19434923..19435303 | 404..786 | 99 | | Plus |
BO12059.pep Sequence
Translation from 16 to 802
> BO12059.pep
MTNMRPPQKSKLLKVVILGDGGVGKSALLTRFVANRYEENNFHTIGVEFM
NKDIVVDGERYTLQIWDTAGQERFRALRTPFYRGSDICLLCYALDDRDSL
KGLGVWRNEFLNYADVDQDKFPFIVVGNKNDIPAQKRQVSSDAVQQWCAE
QKVACHIETSSKAATNVTDAFVLGLRQWRHMECVAEAELRQHGDTIDLTR
PIRLVQRRICCTGGGGGGGGVGQDADGDDAAMHSPGKKVFGQKRNASKAP
ATNYRLASFLDH
BO12059.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:51:48
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Rab9-PA | 256 | CG9994-PA | 1..256 | 1..256 | 1361 | 100 | Plus |
Rab7-PC | 207 | CG5915-PC | 4..181 | 8..186 | 382 | 45 | Plus |
Rab7-PB | 207 | CG5915-PB | 4..181 | 8..186 | 382 | 45 | Plus |
Rab7-PA | 207 | CG5915-PA | 4..181 | 8..186 | 382 | 45 | Plus |
Rab1-PA | 205 | CG3320-PA | 6..166 | 7..172 | 303 | 39.8 | Plus |