Clone BO12059 Report

Search the DGRC for BO12059

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:120
Well:59
Vector:pDNR-Dual
Associated Gene/TranscriptRab9-RA
Protein status:BO12059.pep: validated full length
Sequenced Size:802

Clone Sequence Records

BO12059.3prime Sequence

800 bp (799 high quality bases) assembled on 2006-04-20

> BO12059.3prime
ATGGTCTAGAAAGCTTGCTAGCCGATAATTGGTGGCTGGCGCCTTGCTGG
CGTTGCGCTTCTGGCCGAACACTTTCTTGCCCGGACTGTGCATGGCGGCA
TCATCGCCATCCGCGTCCTGCCCTACGCCGCCGCCACCGCCTCCTCCGCC
TGTGCAACAGATGCGCCGCTGCACCAGGCGAATGGGGCGGGTGAGGTCAA
TGGTGTCGCCGTGCTGGCGCAGTTCCGCCTCGGCCACGCACTCCATGTGC
CGCCACTGGCGAAGGCCAAGGACGAACGCATCCGTCACATTGGTTGCCGC
CTTCGATGACGTCTCGATGTGGCAGGCCACCTTCTGCTCCGCGCACCACT
GCTGCACTGCGTCGGAGCTCACCTGTCGCTTCTGCGCCGGAATGTCGTTC
TTATTTCCCACCACGATGAATGGAAACTTGTCCTGGTCCACATCTGCGTA
GTTGAGGAACTCATTGCGCCACACACCCAATCCCTTCAAGCTGTCCCGGT
CGTCGAGTGCGTAGCAGAGCAGACAGATGTCCGATCCTCTGTAGAACGGG
GTGCGTAGAGCCCGGAATCGCTCCTGGCCAGCGGTGTCCCATATCTGCAG
AGTGTAGCGCTCCCCGTCGACGACTATGTCCTTGTTCATGAACTCCACGC
CGATGGTGTGGAAGTTGTTCTCCTCGTAGCGATTGGCGACGAATCGGGTG
AGCAGGGCGGACTTGCCAACGCCTCCGTCGCCCAGTATGACGACCTTCAG
CAGCTTGGACTTCTGCGGCGGCCGCATGTTCGTCATGTCGACTGATAACT

BO12059.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:36:17
Subject Length Description Subject Range Query Range Score Percent Strand
CG9994-PA 771 Rab9-RA 1..768 786..19 3815 99.8 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 22:58:04
Subject Length Description Subject Range Query Range Score Percent Strand
Rab9-RA 1604 CG9994-RA 299..1066 786..19 3825 99.9 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 22:57:58
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 19434921..19435303 401..19 1900 99.7 Minus
2L 23513712 2L 19434665..19434861 596..400 985 100 Minus
2L 23513712 2L 19432872..19433063 786..595 960 100 Minus
Blast to na_te.dros performed on 2015-02-10 22:58:01 has no hits.

BO12059.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:24:50 Download gff for BO12059.3prime
Subject Subject Range Query Range Percent Splice Strand
Rab9-PA 1..771 16..786 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 04:55:51 Download gff for BO12059.3prime
Subject Subject Range Query Range Percent Splice Strand
CG9994-PA 1..771 16..786 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 07:50:19 Download gff for BO12059.3prime
Subject Subject Range Query Range Percent Splice Strand
Rab9-RA 291..1071 13..794 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 00:15:00 Download gff for BO12059.3prime
Subject Subject Range Query Range Percent Splice Strand
Rab9-RA 291..1071 13..794 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 00:15:00 Download gff for BO12059.3prime
Subject Subject Range Query Range Percent Splice Strand
2L 19432864..19433063 595..794 98 -> Minus
2L 19434667..19434861 400..594 100 -> Minus
2L 19434923..19435308 13..399 98   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 07:50:19 Download gff for BO12059.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 19432864..19433063 595..794 98 -> Minus
arm_2L 19434667..19434861 400..594 100 -> Minus
arm_2L 19434923..19435308 13..399 98   Minus

BO12059.5prime Sequence

800 bp (799 high quality bases) assembled on 2006-04-18

> BO12059.5prime
GAAGTTATCAGTCGACATGACGAACATGCGGCCGCCGCAGAAGTCCAAGC
TGCTGAAGGTCGTCATACTGGGCGACGGAGGCGTTGGCAAGTCCGCCCTG
CTCACCCGATTCGTCGCCAATCGCTACGAGGAGAACAACTTCCACACCAT
CGGCGTGGAGTTCATGAACAAGGACATAGTCGTCGACGGGGAGCGCTACA
CTCTGCAGATATGGGACACCGCTGGCCAGGAGCGATTCCGGGCTCTACGC
ACCCCGTTCTACAGAGGATCGGACATCTGTCTGCTCTGCTACGCACTCGA
CGACCGGGACAGCTTGAAGGGATTGGGTGTGTGGCGCAATGAGTTCCTCA
ACTACGCAGATGTGGACCAGGACAAGTTTCCATTCATCGTGGTGGGAAAT
AAGAACGACATTCCGGCGCAGAAGCGACAGGTGAGCTCCGACGCAGTGCA
GCAGTGGTGCGCGGAGCAGAAGGTGGCCTGCCACATCGAGACGTCATCGA
AGGCGGCAACCAATGTGACGGATGCGTTCGTCCTTGGCCTTCGCCAGTGG
CGGCACATGGAGTGCGTGGCCGAGGCGGAACTGCGCCAGCACGGCGACAC
CATTGACCTCACCCGCCCCATTCGCCTGGTGCAGCGGCGCATCTGTTGCA
CAGGCGGAGGAGGCGGTGGCGGCGGCGTAGGGCAGGACGCGGATGGCGAT
GATGCCGCCATGCACAGTCCGGGCAAGAAAGTGTTCGGCCAGAAGCGCAA
CGCCAGCAAGGCGCCAGCCACCAATTATCGGCTAGCAAGCTTTCTAGACC

BO12059.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:36:17
Subject Length Description Subject Range Query Range Score Percent Strand
CG9994-PA 771 Rab9-RA 1..768 17..784 3815 99.8 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 11:07:23
Subject Length Description Subject Range Query Range Score Percent Strand
Rab9-RA 1604 CG9994-RA 299..1066 17..784 3825 99.9 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 11:07:19
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 19434921..19435303 402..784 1900 99.7 Plus
2L 23513712 2L 19434665..19434861 207..403 985 100 Plus
2L 23513712 2L 19432872..19433063 17..208 960 100 Plus
Blast to na_te.dros performed on 2015-02-11 11:07:21 has no hits.

BO12059.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:24:51 Download gff for BO12059.5prime
Subject Subject Range Query Range Percent Splice Strand
Rab9-PA 1..771 17..787 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 04:55:53 Download gff for BO12059.5prime
Subject Subject Range Query Range Percent Splice Strand
CG9994-PA 1..771 17..787 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-24 16:42:52 Download gff for BO12059.5prime
Subject Subject Range Query Range Percent Splice Strand
Rab9-RA 291..1071 9..790 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 12:40:16 Download gff for BO12059.5prime
Subject Subject Range Query Range Percent Splice Strand
Rab9-RA 291..1071 9..790 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 12:40:16 Download gff for BO12059.5prime
Subject Subject Range Query Range Percent Splice Strand
2L 19434667..19434861 209..403 100 -> Plus
2L 19432864..19433063 9..208 98 -> Plus
2L 19434923..19435308 404..790 98   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 16:42:52 Download gff for BO12059.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 19432864..19433063 9..208 98 -> Plus
arm_2L 19434667..19434861 209..403 100 -> Plus
arm_2L 19434923..19435308 404..790 98   Plus

BO12059.complete Sequence

802 bp assembled on 2006-10-11

GenBank Submission: FJ632294

> BO12059.complete
GAAGTTATCAGTCGACATGACGAACATGCGGCCGCCGCAGAAGTCCAAGC
TGCTGAAGGTCGTCATACTGGGCGACGGAGGCGTTGGCAAGTCCGCCCTG
CTCACCCGATTCGTCGCCAATCGCTACGAGGAGAACAACTTCCACACCAT
CGGCGTGGAGTTCATGAACAAGGACATAGTCGTCGACGGGGAGCGCTACA
CTCTGCAGATATGGGACACCGCTGGCCAGGAGCGATTCCGGGCTCTACGC
ACCCCGTTCTACAGAGGATCGGACATCTGTCTGCTCTGCTACGCACTCGA
CGACCGGGACAGCTTGAAGGGATTGGGTGTGTGGCGCAATGAGTTCCTCA
ACTACGCAGATGTGGACCAGGACAAGTTTCCATTCATCGTGGTGGGAAAT
AAGAACGACATTCCGGCGCAGAAGCGACAGGTGAGCTCCGACGCAGTGCA
GCAGTGGTGCGCGGAGCAGAAGGTGGCCTGCCACATCGAGACGTCATCGA
AGGCGGCAACCAATGTGACGGATGCGTTCGTCCTTGGCCTTCGCCAGTGG
CGGCACATGGAGTGCGTGGCCGAGGCGGAACTGCGCCAGCACGGCGACAC
CATTGACCTCACCCGCCCCATTCGCCTGGTGCAGCGGCGCATCTGTTGCA
CAGGCGGAGGAGGCGGTGGCGGCGGCGTAGGGCAGGACGCGGATGGCGAT
GATGCCGCCATGCACAGTCCGGGCAAGAAAGTGTTCGGCCAGAAGCGCAA
CGCCAGCAAGGCGCCAGCCACCAATTATCGGCTAGCAAGCTTTCTAGACC
AT

BO12059.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 11:08:38
Subject Length Description Subject Range Query Range Score Percent Strand
Rab9-RA 771 CG9994-PA 1..768 17..784 3825 99.9 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:08:39
Subject Length Description Subject Range Query Range Score Percent Strand
Rab9-RA 1604 CG9994-RA 299..1066 17..784 3825 99.9 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 11:08:36
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 19434921..19435303 402..784 1900 99.7 Plus
2L 23513712 2L 19434665..19434861 207..403 985 100 Plus
2L 23513712 2L 19432872..19433063 17..208 960 100 Plus
Blast to na_te.dros performed on 2014-11-27 11:08:37 has no hits.

BO12059.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 13:40:51 Download gff for BO12059.complete
Subject Subject Range Query Range Percent Splice Strand
Rab9-RA 1..771 17..787 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:03:40 Download gff for BO12059.complete
Subject Subject Range Query Range Percent Splice Strand
Rab9-RA 272..1052 9..790 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:45:13 Download gff for BO12059.complete
Subject Subject Range Query Range Percent Splice Strand
Rab9-RA 299..1066 17..786 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 13:40:51 Download gff for BO12059.complete
Subject Subject Range Query Range Percent Splice Strand
Rab9-RA 272..1052 9..790 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:39:43 Download gff for BO12059.complete
Subject Subject Range Query Range Percent Splice Strand
Rab9-RA 299..1066 17..786 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 11:39:43 Download gff for BO12059.complete
Subject Subject Range Query Range Percent Splice Strand
2L 19434923..19435303 404..786 99   Plus
2L 19432872..19433063 17..208 100 -> Plus
2L 19434667..19434861 209..403 100 -> Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:45:13 Download gff for BO12059.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 19432872..19433063 17..208 100 -> Plus
arm_2L 19434667..19434861 209..403 100 -> Plus
arm_2L 19434923..19435303 404..786 99   Plus

BO12059.pep Sequence

Translation from 16 to 802

> BO12059.pep
MTNMRPPQKSKLLKVVILGDGGVGKSALLTRFVANRYEENNFHTIGVEFM
NKDIVVDGERYTLQIWDTAGQERFRALRTPFYRGSDICLLCYALDDRDSL
KGLGVWRNEFLNYADVDQDKFPFIVVGNKNDIPAQKRQVSSDAVQQWCAE
QKVACHIETSSKAATNVTDAFVLGLRQWRHMECVAEAELRQHGDTIDLTR
PIRLVQRRICCTGGGGGGGGVGQDADGDDAAMHSPGKKVFGQKRNASKAP
ATNYRLASFLDH

BO12059.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:51:48
Subject Length Description Subject Range Query Range Score Percent Strand
Rab9-PA 256 CG9994-PA 1..256 1..256 1361 100 Plus
Rab7-PC 207 CG5915-PC 4..181 8..186 382 45 Plus
Rab7-PB 207 CG5915-PB 4..181 8..186 382 45 Plus
Rab7-PA 207 CG5915-PA 4..181 8..186 382 45 Plus
Rab1-PA 205 CG3320-PA 6..166 7..172 303 39.8 Plus