Clone Sequence Records
BO12064.5prime Sequence
908 bp (806 high quality bases) assembled on 2006-04-18
> BO12064.5prime
GAAGTTATCAGTCGACATGTACGACATCAAGCGCCTGGAAGCGGGACAAC
AGAAACTACAGCAAGCACAGCAACCACTGGGCCTTGACCTGAGCGGCCAG
CAACAGCAACTCACCTGCAGCGTGATCACAGCGCCCGAGCATCGGGCTAA
TCCCAATCCCAGCTCCATTTCGCAATCCAACCCCAGCGAGGCCACCCACA
TGACTTTGTTGACGCTGCGCCGGCGCCGTTCGCTGCAGCGACGCGCCTGC
CTTCTGAGCATCCTCGCCGCCTTCGTCTTTGGCATGGCACTGGGCGTTGT
TGTGCCCATGTTCGGCCTGCCCCGCCACCAGGACTCCCCGCCAGATCTGC
CGGAGGAGCAGATACAGATGGTTGCCGTGGAGCCGCTGAGCAGCTACCGC
GTGGAGTTCATCAAGGAGACGGACGAGCTGAGTGCCGAGCAGGTATTCCG
CAATGCCTTCCATCTGGAGCAGGACAAGGATGCTCCGGACTCGATGGTGG
TGAAGAAATTGGACACCAACGACGGCAGCATCAAGGAATTCCATGTGCAG
CGCACCGCCAGCGGTCGTTATCGCAAGGGTCCGGAGAGGAGGCTGTCCAA
GAAGATGCCGGAAAGGGTGCAGCCACAAGAGACCTCTCGTTCTCCGACGA
CCTCGCCGACAAATCCTACCAGTGAGCACCAAGCGGGATTTATTGAGGAG
GACGTCTATTGGGGTCCCACTGTGGAGCAGGCTCTGCCCAAGGGATTCGC
CGCCAAGGACCAAGTCTCTTGGGAACGCTTCGTTGGAGAGCAGGGCCGAG
TAGTTCGCCTGGAGCAGGGATGCGGAAAAATGCAAAATCGCATGGTGGTC
TTTGCGGAAGGAACAAGGGCCTGTGCCCGCTACCGCCAGAATACGGATCA
GATTCAGG
BO12064.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:36:21
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG10917-PA | 1752 | fj-RA | 1..892 | 17..908 | 4410 | 99.7 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 22:41:20
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| fj-RA | 3551 | CG10917-RA | 1350..2241 | 17..908 | 4430 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 22:41:14
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 18234110..18235001 | 17..908 | 4430 | 99.8 | Plus |
Blast to na_te.dros performed on 2015-02-10 22:41:17 has no hits.
BO12064.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed on 2007-01-18 05:24:57 has no hits.
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 04:56:01 Download gff for
BO12064.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10917-PA | 1..892 | 17..908 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-22 05:42:25 Download gff for
BO12064.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| fj-RA | 1350..2241 | 17..908 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 00:13:40 Download gff for
BO12064.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| fj-RA | 1350..2241 | 17..908 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 00:13:40 Download gff for
BO12064.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 18234110..18235001 | 17..908 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-22 05:42:25 Download gff for
BO12064.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 14121615..14122506 | 17..908 | 99 | | Plus |
BO12064.complete Sequence
1783 bp assembled on 2008-01-17
GenBank Submission: FJ632295
> BO12064.complete
GAAGTTATCAGTCGACATGTACGACATCAAGCGCCTGGAAGCGGGACAAC
AGAAACTACAGCAAGCACAGCAACCACTGGGCCTTGACCTGAGCGGCCAG
CAACAGCAACTCACCTGCAGCGTGATCACAGCGCCCGAGCATCGGGCTAA
TCCCAATCCCAGCTCCATTTCGCAATCCAACCCCAGCGAGGCCACCCACA
TGACTTTGTTGACGCTGCGCCGGCGCCGTTCGCTGCAGCGACGCGCCTGC
CTTCTGAGCATCCTCGCCGCCTTCGTCTTTGGCATGGCACTGGGCGTTGT
TGTGCCCATGTTCGGCCTGCCCCGCCACCAGGACTCCCCGCCAGATCTGC
CGGAGGAGCAGATACAGATGGTTGCCGTGGAGCCGCTGAGCAGCTACCGC
GTGGAGTTCATCAAGGAGACGGACGAGCTGAGTGCCGAGCAGGTATTCCG
CAATGCCTTCCATCTGGAGCAGGACAAGGATGCTCCGGACTCGATGGTGG
TGAAGAAATTGGACACCAACGACGGCAGCATCAAGGAATTCCATGTGCAG
CGCACCGCCAGCGGTCGTTATCGCAAGGGTCCGGAGAGGAGGCTGTCCAA
GAAGATGCCGGAAAGGGTGCAGCCACAAGAGACCTCTCGTTCTCCGACGA
CCTCGCCGACAAATCCTACCAGTGAGCACCAAGCGGGATTTATTGAGGAG
GACGTCTATTGGGGTCCCACTGTGGAGCAGGCTCTGCCCAAGGGATTCGC
CGCCAAGGACCAAGTCTCTTGGGAACGCTTCGTTGGAGAGCAGGGCCGAG
TAGTTCGCCTGGAGCAGGGATGCGGAAGAATGCAAAATCGCATGGTGGTC
TTTGCGGATGGAACAAGGGCCTGTGCCCGCTACCGCCAGAATACGGATCA
GATTCAGGGCGAGATATTCAGCTACTACTTGGGCCAGCTCTTAAACATAA
GCAATCTGGCCCCGAGTGCCGCCACCGTGGTGGACACCAGCACGCCCAAT
TGGGCCGCTGCCCTGGGCGACATTACACAGGCGCAGTGGAAGGAGCGCCG
ACCAGTGGTGCTGACCCGCTGGCTGTCCGATCTGGAGCCGGCTGGGATAC
CACAGCCCTTTCAGCCGCTGGAGCGGCATCTCAACAAACACGACGTCTGG
AACCTGACGCGGCACATGCAATCCGAAAGGCAAGCGCAATCGCAGCCGCA
CGGATTACTCAAGCGGTTGGGGGCTGCCAGTTCGCCCGGCTCCGCTCATC
AATCAAACGCGATTGAGGAGACAGGAACAGGAACCGAAACGGCCAACGGA
GCGCTGGTGCAGCGACTAATTGAATTGGCACAATGGTCCGATTTAATCGT
CTTCGATTACCTGATCGCGAACCTCGATCGCGTGGTTAATAACCTGTACA
ACTTTCAATGGAACGCCGACATCATGGCCGCGCCGGCGCACAACCTTGCC
CGCCAGTCCGCCTCGCAGCTGCTCGTCTTCCTGGACAACGAAAGCGGCCT
GCTGCACGGCTACCGGCTGTTGAAGAAGTACGAGGCATACCACAGCCTCC
TGCTCGACAACCTGTGCGTCTTCCGGCGGCCCACAATCGACGCCCTGCGA
CGTTTGCGGGCGGCGGGTGCGGGACGCCGGCTGCGTGACCTCTTCGAGCG
GACGACCAGCGCCGGAGTGCGGGATGTTTTACCTTCTCTGCCGGACAAGT
CCGTGAAAATCCTGGTGGAGCGCATCGATCGGGTGCTGGGCCAGGTGCAG
AAGTGCCAGGGCAGCGCAAGCTTTCTAGACCAT
BO12064.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 01:14:35
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| fj-RA | 1752 | CG10917-PA | 1..1749 | 17..1765 | 8745 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 01:14:36
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| fj-RA | 3551 | CG10917-RA | 1350..3098 | 17..1765 | 8745 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 01:14:32
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 18234110..18235858 | 17..1765 | 8745 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 01:14:34 has no hits.
BO12064.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 13:59:46 Download gff for
BO12064.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| fj-RA | 1..1752 | 17..1769 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-07-28 15:29:36 Download gff for
BO12064.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| fj-RA | 1348..3096 | 17..1767 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 04:48:51 Download gff for
BO12064.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| fj-RA | 1350..3098 | 17..1767 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 13:59:46 Download gff for
BO12064.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| fj-RA | 1348..3099 | 17..1769 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 02:21:34 Download gff for
BO12064.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| fj-RA | 1350..3098 | 17..1767 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 02:21:34 Download gff for
BO12064.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 18234110..18235858 | 17..1767 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 04:48:51 Download gff for
BO12064.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 14121615..14123363 | 17..1767 | 99 | | Plus |
BO12064.pep Sequence
Translation from 16 to 1783
> BO12064.pep
MYDIKRLEAGQQKLQQAQQPLGLDLSGQQQQLTCSVITAPEHRANPNPSS
ISQSNPSEATHMTLLTLRRRRSLQRRACLLSILAAFVFGMALGVVVPMFG
LPRHQDSPPDLPEEQIQMVAVEPLSSYRVEFIKETDELSAEQVFRNAFHL
EQDKDAPDSMVVKKLDTNDGSIKEFHVQRTASGRYRKGPERRLSKKMPER
VQPQETSRSPTTSPTNPTSEHQAGFIEEDVYWGPTVEQALPKGFAAKDQV
SWERFVGEQGRVVRLEQGCGRMQNRMVVFADGTRACARYRQNTDQIQGEI
FSYYLGQLLNISNLAPSAATVVDTSTPNWAAALGDITQAQWKERRPVVLT
RWLSDLEPAGIPQPFQPLERHLNKHDVWNLTRHMQSERQAQSQPHGLLKR
LGAASSPGSAHQSNAIEETGTGTETANGALVQRLIELAQWSDLIVFDYLI
ANLDRVVNNLYNFQWNADIMAAPAHNLARQSASQLLVFLDNESGLLHGYR
LLKKYEAYHSLLLDNLCVFRRPTIDALRRLRAAGAGRRLRDLFERTTSAG
VRDVLPSLPDKSVKILVERIDRVLGQVQKCQGSASFLDH
BO12064.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 02:26:50
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| fj-PA | 583 | CG10917-PA | 1..583 | 1..583 | 3008 | 100 | Plus |
