Clone Sequence Records
BO12065.3prime Sequence
731 bp (730 high quality bases) assembled on 2006-04-20
> BO12065.3prime
ATGGTCTAGAAAGCTTGCAATCGAATCCCCCTTGGATTCACTCACATCAT
TATCCTCCGATTTGGCATCATTGGGTTCCGTTGCTTTCGACGTTGTTGCC
ATTGCCATTGCCGTTGCCGTTGCCGTTGTCGTTGTCAGCAGTTGTCGCTG
CTGTTGTCGTTGCGCCAGCAACTGCAATTGATGTTGCTCCTTCTGCCGCC
GATGGGCAATCTCGATTTGCTGCCACTGCCGCGGGGTGAAGGTCCCCTGA
TCGCCGGTTTCGATGGTGTGCAGCTCGAGATCTTCGTTATCGTACTCGTT
GTAGTGTAGTCTGCGCTTCTGCACCATCTTGGCCTTGTCATCGCCGAAAC
TCGGTGCCCGTCTAATGGGCTTCTTGGCCAGTTCCTTGGTGTGAGATTTA
TGCTGATGATGACGCACCGGCCGGCTCTGCTGCTCCGACTGCTCCGACTG
CTGCTCCTGCAGATGCTGCTGCAGCTGCCGCTGCAAGTCCAGCTCCCACG
CCATCTGATGTTGCTGCAGGCGCAAATGATGCTGCTCGTGTCTCAGGCGC
AATTCCTCCTGCGGATTCCGGCGCGTTCTGGTTGAACTTTTATCACGTTC
TCGTCTGAAGTCATCAGGCAACACCTTCTGCCAGCCATTATTCTGAACAT
TAGCCTGCGCCTCCAGGCGAACAAAACTTAGGAAAATCAAGGCAAGCCGC
AGGGTATTTAACTGCATGTCGACTGATAACT
BO12065.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:36:22
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG31629-PB | 702 | Pvf3-RB | 1..699 | 717..19 | 3495 | 100 | Minus |
CG31629-PA | 1449 | Pvf3-RA | 1..674 | 717..44 | 3370 | 100 | Minus |
CG7847-PB | 2721 | sr-RB | 2620..2652 | 537..505 | 140 | 96.9 | Minus |
CG7847-PA | 3561 | sr-RA | 3460..3492 | 537..505 | 140 | 96.9 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-06 12:55:23
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Pvf3-RA | 3486 | CG34378-RA | 133..811 | 717..39 | 3380 | 99.9 | Minus |
Pvf3-RE | 2485 | CG34378-RE | 675..1347 | 717..45 | 3365 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-06 12:55:17
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 7132697..7133395 | 19..717 | 3495 | 100 | Plus |
Blast to na_te.dros performed 2015-02-06 12:55:20
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2757..2870 | 192..78 | 221 | 67 | Minus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2305..2421 | 197..80 | 219 | 67.5 | Minus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2400..2883 | 561..80 | 215 | 53.6 | Minus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6734..6854 | 195..74 | 211 | 64.8 | Minus |
roo | 9092 | roo DM_ROO 9092bp | 1076..1171 | 204..108 | 203 | 69.1 | Minus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6722..6878 | 228..74 | 195 | 59.2 | Minus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2255..2420 | 554..386 | 189 | 59.4 | Minus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6720..6827 | 188..80 | 182 | 64.2 | Minus |
Dyak\TART | 8444 | Dyak\TART TARTYAK 8444bp | 7141..7226 | 164..80 | 157 | 66.3 | Minus |
TART-C | 11124 | TART-C TARTC 11124bp | 8594..8679 | 164..80 | 157 | 66.3 | Minus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6794..6917 | 204..80 | 155 | 60.6 | Minus |
BO12065.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:24:58 Download gff for
BO12065.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Pvf3-PB | 1..702 | 15..717 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 04:56:03 Download gff for
BO12065.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31629-PB | 1..702 | 15..717 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-11 07:05:32 Download gff for
BO12065.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Pvf3-RA | 133..817 | 32..717 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-06 13:45:04 Download gff for
BO12065.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Pvf3-RA | 133..817 | 32..717 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-06 13:45:04 Download gff for
BO12065.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 7132694..7133395 | 15..717 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-11 07:05:32 Download gff for
BO12065.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 7132694..7133395 | 15..717 | 99 | | Plus |
BO12065.5prime Sequence
731 bp (730 high quality bases) assembled on 2006-04-18
> BO12065.5prime
GAAGTTATCAGTCGACATGCAGTTAAATACCCTGCGGCTTGCCTTGATTT
TCCTAAGTTTTGTTCGCCTGGAGGCGCAGGCTAATGTTCAGAATAATGGC
TGGCAGAAGGTGTTGCCTGATGACTTCAGACGAGAACGTGATAAAAGTTC
AACCAGAACGCGCCGGAATCCGCAGGAGGAATTGCGCCTGAGACACGAGC
AGCATCATTTGCGCCTGCAGCAACATCAGATGGCGTGGGAGCTGGACTTG
CAGCGGCAGCTGCAGCAGCATCTGCAGGAGCAGCAGTCGGAGCAGTCGGA
GCAGCAGAGCCGGCCGGTGCGTCATCATCAGCATAAATCTCACACCAAGG
AACTGGCCAAGAAGCCCATTAGACGGGCACCGAGTTTCGGCGATGACAAG
GCCAAGATGGTGCAGAAGCGCAGACTACACTACAACGAGTACGATAACGA
AGATCTCGAGCTGCACACCATCGAAACCGGCGATCAGGGGACCTTCACCC
CGCGGCAGTGGCAGCAAATCGAGATTGCCCATCGGCGGCAGAAGGAGCAA
CATCAATTGCAGTTGCTGGCGCAACGACAACAGCAGCGACAACTGCTGAC
AACGACAACGGCAACGGCAACGGCAATGGCAATGGCAACAACGTCGAAAG
CAACGGAACCCAATGATGCCAAATCGGAGGATAATGATGTGAGTGAATCC
AAGGGGGATTCGATTGCAAGCTTTCTAGACC
BO12065.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:36:23
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG31629-PB | 702 | Pvf3-RB | 1..699 | 17..715 | 3495 | 100 | Plus |
CG31629-PA | 1449 | Pvf3-RA | 1..674 | 17..690 | 3370 | 100 | Plus |
CG7847-PB | 2721 | sr-RB | 2620..2652 | 197..229 | 140 | 96.9 | Plus |
CG7847-PA | 3561 | sr-RA | 3460..3492 | 197..229 | 140 | 96.9 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 20:10:16
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Pvf3-RA | 3486 | CG34378-RA | 133..811 | 17..695 | 3380 | 99.9 | Plus |
Pvf3-RE | 2485 | CG34378-RE | 675..1347 | 17..689 | 3365 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 20:10:14
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 7132697..7133395 | 715..17 | 3495 | 100 | Minus |
Blast to na_te.dros performed 2015-02-12 20:10:15
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2757..2870 | 542..656 | 221 | 67 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2305..2421 | 537..654 | 219 | 67.5 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2400..2883 | 173..654 | 215 | 53.6 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6734..6854 | 539..660 | 211 | 64.8 | Plus |
roo | 9092 | roo DM_ROO 9092bp | 1076..1171 | 530..626 | 203 | 69.1 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6722..6878 | 506..660 | 195 | 59.2 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2255..2420 | 180..348 | 189 | 59.4 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6720..6827 | 546..654 | 182 | 64.2 | Plus |
Dyak\TART | 8444 | Dyak\TART TARTYAK 8444bp | 7141..7226 | 570..654 | 157 | 66.3 | Plus |
TART-C | 11124 | TART-C TARTC 11124bp | 8594..8679 | 570..654 | 157 | 66.3 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6794..6917 | 530..654 | 155 | 60.6 | Plus |
BO12065.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:24:59 Download gff for
BO12065.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Pvf3-PB | 1..702 | 17..719 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 04:56:04 Download gff for
BO12065.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31629-PB | 1..702 | 17..719 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 11:57:08 Download gff for
BO12065.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Pvf3-RA | 133..817 | 17..702 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 01:49:00 Download gff for
BO12065.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Pvf3-RA | 133..817 | 17..702 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 01:49:00 Download gff for
BO12065.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 7132694..7133395 | 17..719 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 11:57:08 Download gff for
BO12065.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 7132694..7133395 | 17..719 | 99 | | Minus |
BO12065.complete Sequence
733 bp assembled on 2006-10-11
GenBank Submission: FJ632296
> BO12065.complete
GAAGTTATCAGTCGACATGCAGTTAAATACCCTGCGGCTTGCCTTGATTT
TCCTAAGTTTTGTTCGCCTGGAGGCGCAGGCTAATGTTCAGAATAATGGC
TGGCAGAAGGTGTTGCCTGATGACTTCAGACGAGAACGTGATAAAAGTTC
AACCAGAACGCGCCGGAATCCGCAGGAGGAATTGCGCCTGAGACACGAGC
AGCATCATTTGCGCCTGCAGCAACATCAGATGGCGTGGGAGCTGGACTTG
CAGCGGCAGCTGCAGCAGCATCTGCAGGAGCAGCAGTCGGAGCAGTCGGA
GCAGCAGAGCCGGCCGGTGCGTCATCATCAGCATAAATCTCACACCAAGG
AACTGGCCAAGAAGCCCATTAGACGGGCACCGAGTTTCGGCGATGACAAG
GCCAAGATGGTGCAGAAGCGCAGACTACACTACAACGAGTACGATAACGA
AGATCTCGAGCTGCACACCATCGAAACCGGCGATCAGGGGACCTTCACCC
CGCGGCAGTGGCAGCAAATCGAGATTGCCCATCGGCGGCAGAAGGAGCAA
CATCAATTGCAGTTGCTGGCGCAACGACAACAGCAGCGACAACTGCTGAC
AACGACAACGGCAACGGCAACGGCAATGGCAATGGCAACAACGTCGAAAG
CAACGGAACCCAATGATGCCAAATCGGAGGATAATGATGTGAGTGAATCC
AAGGGGGATTCGATTGCAAGCTTTCTAGACCAT
BO12065.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 15:45:12
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Pvf3-RA | 1449 | CG34378-PA | 1..679 | 17..695 | 3380 | 99.9 | Plus |
Pvf3-RE | 1410 | CG34378-PE | 1..673 | 17..689 | 3365 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 15:45:13
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Pvf3-RA | 3486 | CG34378-RA | 133..811 | 17..695 | 3380 | 99.9 | Plus |
Pvf3-RE | 2485 | CG34378-RE | 675..1347 | 17..689 | 3365 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 15:45:09
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 7132697..7133395 | 715..17 | 3495 | 100 | Minus |
Blast to na_te.dros performed 2014-11-26 15:45:11
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2757..2870 | 542..656 | 221 | 67 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2305..2421 | 537..654 | 219 | 67.5 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2400..2883 | 173..654 | 215 | 53.6 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6734..6854 | 539..660 | 211 | 64.8 | Plus |
roo | 9092 | roo DM_ROO 9092bp | 1076..1171 | 530..626 | 203 | 69.1 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6722..6878 | 506..660 | 195 | 59.2 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2255..2420 | 180..348 | 189 | 59.4 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6720..6827 | 546..654 | 182 | 64.2 | Plus |
Dyak\TART | 8444 | Dyak\TART TARTYAK 8444bp | 7141..7226 | 570..654 | 157 | 66.3 | Plus |
TART-C | 11124 | TART-C TARTC 11124bp | 8594..8679 | 570..654 | 157 | 66.3 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6794..6917 | 530..654 | 155 | 60.6 | Plus |
BO12065.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 13:40:52 Download gff for
BO12065.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Pvf3-RB | 1..702 | 17..719 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:03:42 Download gff for
BO12065.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Pvf3-RB | 289..990 | 17..719 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 01:43:37 Download gff for
BO12065.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Pvf3-RA | 133..817 | 17..702 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 13:40:52 Download gff for
BO12065.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Pvf3-RB | 289..990 | 17..719 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:02:56 Download gff for
BO12065.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Pvf3-RA | 133..817 | 17..702 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 17:02:56 Download gff for
BO12065.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 7132695..7133395 | 17..717 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 01:43:37 Download gff for
BO12065.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 7132695..7133395 | 17..717 | 99 | | Minus |
BO12065.pep Sequence
Translation from 16 to 733
> BO12065.pep
MQLNTLRLALIFLSFVRLEAQANVQNNGWQKVLPDDFRRERDKSSTRTRR
NPQEELRLRHEQHHLRLQQHQMAWELDLQRQLQQHLQEQQSEQSEQQSRP
VRHHQHKSHTKELAKKPIRRAPSFGDDKAKMVQKRRLHYNEYDNEDLELH
TIETGDQGTFTPRQWQQIEIAHRRQKEQHQLQLLAQRQQQRQLLTTTTAT
ATAMAMATTSKATEPNDAKSEDNDVSESKGDSIASFLDH
BO12065.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:51:46
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Pvf3-PA | 482 | CG34378-PA | 1..229 | 1..229 | 1178 | 99.1 | Plus |
Pvf3-PE | 469 | CG34378-PE | 1..228 | 1..228 | 1166 | 98.7 | Plus |