Clone BO12066 Report

Search the DGRC for BO12066

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:120
Well:66
Vector:pDNR-Dual
Associated Gene/TranscriptCG12576-RA
Protein status:BO12066.pep:
Sequenced Size:1141

Clone Sequence Records

BO12066.5prime Sequence

876 bp (794 high quality bases) assembled on 2006-04-18

> BO12066.5prime
GAAGTTATCAGTCGACATGTTCCAAGTCCTGCCCCGTCCGTCAAGATCCA
CGTTCCACTGCATAGCGGCAGCCGTTGTCACAGTCGTCCTAATGTCATGG
GCCCGACCGCTGGGCGTGCTATTCCTGGGACTACTTGGCTACTGGATCTA
CTGGACGCGCTGCAGCTTCCGCGTTGTGCCTACGGACGAGCTGCGCGGCA
AGATCAACACCTGGCTGCAGAGGATCGACGACTGGCGCCACCGCAGTCCC
AGCATGTTCTGCTTGGCCAGCAGCGGTTGCTTGGGCACCCTCGCAGTGCT
CGGTCACCTTATATCCGGATCAACGCTGGTACTGACCATCCTGGTCGTCT
CCGCACTAGTCTCCACCAAGTACACCTTCAAGCTGCTGAAGATCGAGCAC
AGGGACTTTCAGTGGTCGGAGAAGCTGAACTACAACAACTTGGAAGCCGA
GGCAGAGGATGAGTTCCTGCCGGACGTGAACGAGTCGAATCTGTTTGTGT
TGGAGCGGGCCAGCGATGTGGCCACCATAAGTTCGCCCACCGATGCGAAT
GATGAGGACGATGACGATCGCAGCGACGACGTACCGTCGGAGCTCCTCAT
TCCGGATGCGATACCCGAGATTGACGAGCAATCCACCGACGAGGACGATG
AACTAGCCCCGCTGGCGCCCAAGAGGCAGGAGAAGCTGCAGCCACAGGAG
CAGCCGGCCAAGGAGAGCGAGGATATGAACTTCCGAAAGAGTCACTTCAA
GCGTGACTCGTCGCTGTCCACATCCTCCTCGTCGGAGGAAAGCCTGTCAA
AGGGGCTGCAGTTCCCCGATCACACCACCGTAGATGCCACTGGCAACCCT
CAGTTGCGTCAGATAACCGCTTGGCC

BO12066.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:36:24
Subject Length Description Subject Range Query Range Score Percent Strand
CG12576-PA 1110 CG12576-RA 1..855 17..871 4275 100 Plus
CG12576-PB 873 CG12576-RB 1..618 254..871 3090 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 17:00:08
Subject Length Description Subject Range Query Range Score Percent Strand
CG12576-RE 2404 CG12576-RE 415..1269 17..871 4275 100 Plus
CG12576-RF 2547 CG12576-RF 558..1412 17..871 4275 100 Plus
CG12576-RA 2407 CG12576-RA 418..1272 17..871 4275 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 17:00:05
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 22475986..22476453 871..404 2340 100 Minus
X 23542271 X 22477179..22477484 404..99 1530 100 Minus
X 23542271 X 22480511..22480594 100..17 420 100 Minus
Blast to na_te.dros performed on 2015-02-12 17:00:07 has no hits.

BO12066.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:25:00 Download gff for BO12066.5prime
Subject Subject Range Query Range Percent Splice Strand
CG12576-PA 1..859 17..876 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 04:56:05 Download gff for BO12066.5prime
Subject Subject Range Query Range Percent Splice Strand
CG12576-PA 1..859 17..876 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 18:38:12 Download gff for BO12066.5prime
Subject Subject Range Query Range Percent Splice Strand
CG12576-RA 410..1276 9..876 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 18:54:36 Download gff for BO12066.5prime
Subject Subject Range Query Range Percent Splice Strand
CG12576-RA 410..1276 9..876 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 18:54:36 Download gff for BO12066.5prime
Subject Subject Range Query Range Percent Splice Strand
X 22475982..22476452 405..876 99 <- Minus
X 22477179..22477483 100..404 100 <- Minus
X 22480512..22480602 9..99 95   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 18:38:12 Download gff for BO12066.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 21877818..21878288 405..876 99 <- Minus
arm_X 21879015..21879319 100..404 100 <- Minus
arm_X 21882348..21882438 9..99 95   Minus

BO12066.complete Sequence

1141 bp assembled on 2008-01-17

GenBank Submission: FJ632297

> BO12066.complete
GAAGTTATCAGTCGACATGTTCCAAGTCCTGCCCCGTCCGTCAAGATCCA
CGTTCCACTGCATAGCGGCAGCCGTTGTCACAGTCGTCCTAATGTCATGG
GCCCGACCGCTGGGCGTGCTATTCCTGGGACTACTTGGCTACTGGATCTA
CTGGACGCGCTGCAGCTTCCGCGTTGTGCCTACGGACGAGCTGCGCGGCA
AGATCAACACCTGGCTGCAGAGGATCGACGACTGGCGCCACCGCAGTCCC
AGCATGTTCTGCTTGGCCAGCAGCGGTTGCTTGGGCACCCTCGCAGTGCT
CGGTCACCTTATATCCGGATCAACGCTGGTACTGACCATCCTGGTCGTCT
CCGCACTAGTCTCCACCAAGTACACCTTCAAGCTGCTGAAGATCGAGCAC
AGGGACTTTCAGTGGTCGGAGAAGCTGAACTACAACAACTTGGAAGCCGA
GGCAGAGGATGAGTTCCTGCCGGACGTGAACGAGTCGAATCTGTTTGTGT
TGGAGCGGGCCAGCGATGTGGCCACCATAAGTTCGCCCACCGATGCGAAT
GATGAGGACGATGACGATCGCAGCGACGACGTACCGTCGGAGCTCCTCAT
TCCGGATGCGATACCCGAGATTGACGAGCAATCCACCGACGAGGACGATG
AACTAGCCCCGCTGGCGCCCAAGAGGCAGGAGAAGCTGCAGCCACAGGAG
CAGCCGGCCAAGGAGAGCGAGGATATGAACTTCCGAAAGAGTCACTTCAA
GCGTGACTCGTCGCTGTCCACATCCTCCTCGTCGGAGGAAAGCCTGTCAA
AGGGGCTGCAGTTCCCCGATCACACCACCGTAGATGCCACTGGCAACCCT
CAGTTGCGTCAGATAACCGCTGGCCCGGATCCCGCCGGCGAGCTTGTAGC
CCTGGCCGTGAAAACGCAGGCTCAGGCGCTCCTGGCAAACAGCGGGAAGC
TCCTGCCCAGCCTTGTTACCGGCCTGGTGCAATGGGGAGCAGGTGGTGCT
GCTGCAGCCGGTGCCAGCGATTGCACGGATTCAAATCGAGATCGTGACCA
GCAGCGCATTGTCACCGCCCTGGATTCGTCGGACGAGAGCGATTTTGAGA
TACTCGAATCGGATGACTTTAAGGCAAGCTTTCTAGACCAT

BO12066.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 01:25:38
Subject Length Description Subject Range Query Range Score Percent Strand
CG12576-RE 1110 CG12576-PE 1..1107 17..1123 5535 100 Plus
CG12576-RF 1110 CG12576-PF 1..1107 17..1123 5535 100 Plus
CG12576-RA 1110 CG12576-PA 1..1107 17..1123 5535 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 01:25:40
Subject Length Description Subject Range Query Range Score Percent Strand
CG12576-RE 2404 CG12576-RE 415..1521 17..1123 5535 100 Plus
CG12576-RF 2547 CG12576-RF 558..1664 17..1123 5535 100 Plus
CG12576-RA 2407 CG12576-RA 418..1524 17..1123 5535 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 01:25:36
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 22475734..22476453 1123..404 3600 100 Minus
X 23542271 X 22477179..22477484 404..99 1530 100 Minus
X 23542271 X 22480511..22480594 100..17 420 100 Minus
Blast to na_te.dros performed on 2014-11-27 01:25:37 has no hits.

BO12066.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 13:59:47 Download gff for BO12066.complete
Subject Subject Range Query Range Percent Splice Strand
CG12576-RA 1..1110 17..1127 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-07-28 15:30:11 Download gff for BO12066.complete
Subject Subject Range Query Range Percent Splice Strand
CG12576-RA 483..1584 22..1125 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 04:53:37 Download gff for BO12066.complete
Subject Subject Range Query Range Percent Splice Strand
CG12576-RA 423..1524 22..1125 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 13:59:47 Download gff for BO12066.complete
Subject Subject Range Query Range Percent Splice Strand
CG12576-RA 470..1592 9..1131 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 02:25:14 Download gff for BO12066.complete
Subject Subject Range Query Range Percent Splice Strand
CG12576-RA 423..1524 22..1125 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 02:25:14 Download gff for BO12066.complete
Subject Subject Range Query Range Percent Splice Strand
X 22475732..22476452 405..1125 99 <- Minus
X 22477179..22477483 100..404 100 <- Minus
X 22480512..22480589 22..99 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 04:53:37 Download gff for BO12066.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 21877568..21878288 405..1125 99 <- Minus
arm_X 21879015..21879319 100..404 100 <- Minus
arm_X 21882348..21882425 22..99 100   Minus

BO12066.pep Sequence

Translation from 16 to 1141

> BO12066.pep
MFQVLPRPSRSTFHCIAAAVVTVVLMSWARPLGVLFLGLLGYWIYWTRCS
FRVVPTDELRGKINTWLQRIDDWRHRSPSMFCLASSGCLGTLAVLGHLIS
GSTLVLTILVVSALVSTKYTFKLLKIEHRDFQWSEKLNYNNLEAEAEDEF
LPDVNESNLFVLERASDVATISSPTDANDEDDDDRSDDVPSELLIPDAIP
EIDEQSTDEDDELAPLAPKRQEKLQPQEQPAKESEDMNFRKSHFKRDSSL
STSSSSEESLSKGLQFPDHTTVDATGNPQLRQITAGPDPAGELVALAVKT
QAQALLANSGKLLPSLVTGLVQWGAGGAAAAGASDCTDSNRDRDQQRIVT
ALDSSDESDFEILESDDFKASFLDH

BO12066.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:31:02
Subject Length Description Subject Range Query Range Score Percent Strand
CG12576-PE 369 CG12576-PE 1..369 1..369 1897 100 Plus
CG12576-PF 369 CG12576-PF 1..369 1..369 1897 100 Plus
CG12576-PA 369 CG12576-PA 1..369 1..369 1897 100 Plus
CG12576-PB 290 CG12576-PB 1..290 80..369 1463 100 Plus