Clone Sequence Records
BO12066.5prime Sequence
876 bp (794 high quality bases) assembled on 2006-04-18
> BO12066.5prime
GAAGTTATCAGTCGACATGTTCCAAGTCCTGCCCCGTCCGTCAAGATCCA
CGTTCCACTGCATAGCGGCAGCCGTTGTCACAGTCGTCCTAATGTCATGG
GCCCGACCGCTGGGCGTGCTATTCCTGGGACTACTTGGCTACTGGATCTA
CTGGACGCGCTGCAGCTTCCGCGTTGTGCCTACGGACGAGCTGCGCGGCA
AGATCAACACCTGGCTGCAGAGGATCGACGACTGGCGCCACCGCAGTCCC
AGCATGTTCTGCTTGGCCAGCAGCGGTTGCTTGGGCACCCTCGCAGTGCT
CGGTCACCTTATATCCGGATCAACGCTGGTACTGACCATCCTGGTCGTCT
CCGCACTAGTCTCCACCAAGTACACCTTCAAGCTGCTGAAGATCGAGCAC
AGGGACTTTCAGTGGTCGGAGAAGCTGAACTACAACAACTTGGAAGCCGA
GGCAGAGGATGAGTTCCTGCCGGACGTGAACGAGTCGAATCTGTTTGTGT
TGGAGCGGGCCAGCGATGTGGCCACCATAAGTTCGCCCACCGATGCGAAT
GATGAGGACGATGACGATCGCAGCGACGACGTACCGTCGGAGCTCCTCAT
TCCGGATGCGATACCCGAGATTGACGAGCAATCCACCGACGAGGACGATG
AACTAGCCCCGCTGGCGCCCAAGAGGCAGGAGAAGCTGCAGCCACAGGAG
CAGCCGGCCAAGGAGAGCGAGGATATGAACTTCCGAAAGAGTCACTTCAA
GCGTGACTCGTCGCTGTCCACATCCTCCTCGTCGGAGGAAAGCCTGTCAA
AGGGGCTGCAGTTCCCCGATCACACCACCGTAGATGCCACTGGCAACCCT
CAGTTGCGTCAGATAACCGCTTGGCC
BO12066.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:36:24
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG12576-PA | 1110 | CG12576-RA | 1..855 | 17..871 | 4275 | 100 | Plus |
CG12576-PB | 873 | CG12576-RB | 1..618 | 254..871 | 3090 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 17:00:08
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG12576-RE | 2404 | CG12576-RE | 415..1269 | 17..871 | 4275 | 100 | Plus |
CG12576-RF | 2547 | CG12576-RF | 558..1412 | 17..871 | 4275 | 100 | Plus |
CG12576-RA | 2407 | CG12576-RA | 418..1272 | 17..871 | 4275 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 17:00:05
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 22475986..22476453 | 871..404 | 2340 | 100 | Minus |
X | 23542271 | X | 22477179..22477484 | 404..99 | 1530 | 100 | Minus |
X | 23542271 | X | 22480511..22480594 | 100..17 | 420 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-12 17:00:07 has no hits.
BO12066.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:25:00 Download gff for
BO12066.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12576-PA | 1..859 | 17..876 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 04:56:05 Download gff for
BO12066.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12576-PA | 1..859 | 17..876 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 18:38:12 Download gff for
BO12066.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12576-RA | 410..1276 | 9..876 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 18:54:36 Download gff for
BO12066.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12576-RA | 410..1276 | 9..876 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 18:54:36 Download gff for
BO12066.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 22475982..22476452 | 405..876 | 99 | <- | Minus |
X | 22477179..22477483 | 100..404 | 100 | <- | Minus |
X | 22480512..22480602 | 9..99 | 95 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 18:38:12 Download gff for
BO12066.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 21877818..21878288 | 405..876 | 99 | <- | Minus |
arm_X | 21879015..21879319 | 100..404 | 100 | <- | Minus |
arm_X | 21882348..21882438 | 9..99 | 95 | | Minus |
BO12066.complete Sequence
1141 bp assembled on 2008-01-17
GenBank Submission: FJ632297
> BO12066.complete
GAAGTTATCAGTCGACATGTTCCAAGTCCTGCCCCGTCCGTCAAGATCCA
CGTTCCACTGCATAGCGGCAGCCGTTGTCACAGTCGTCCTAATGTCATGG
GCCCGACCGCTGGGCGTGCTATTCCTGGGACTACTTGGCTACTGGATCTA
CTGGACGCGCTGCAGCTTCCGCGTTGTGCCTACGGACGAGCTGCGCGGCA
AGATCAACACCTGGCTGCAGAGGATCGACGACTGGCGCCACCGCAGTCCC
AGCATGTTCTGCTTGGCCAGCAGCGGTTGCTTGGGCACCCTCGCAGTGCT
CGGTCACCTTATATCCGGATCAACGCTGGTACTGACCATCCTGGTCGTCT
CCGCACTAGTCTCCACCAAGTACACCTTCAAGCTGCTGAAGATCGAGCAC
AGGGACTTTCAGTGGTCGGAGAAGCTGAACTACAACAACTTGGAAGCCGA
GGCAGAGGATGAGTTCCTGCCGGACGTGAACGAGTCGAATCTGTTTGTGT
TGGAGCGGGCCAGCGATGTGGCCACCATAAGTTCGCCCACCGATGCGAAT
GATGAGGACGATGACGATCGCAGCGACGACGTACCGTCGGAGCTCCTCAT
TCCGGATGCGATACCCGAGATTGACGAGCAATCCACCGACGAGGACGATG
AACTAGCCCCGCTGGCGCCCAAGAGGCAGGAGAAGCTGCAGCCACAGGAG
CAGCCGGCCAAGGAGAGCGAGGATATGAACTTCCGAAAGAGTCACTTCAA
GCGTGACTCGTCGCTGTCCACATCCTCCTCGTCGGAGGAAAGCCTGTCAA
AGGGGCTGCAGTTCCCCGATCACACCACCGTAGATGCCACTGGCAACCCT
CAGTTGCGTCAGATAACCGCTGGCCCGGATCCCGCCGGCGAGCTTGTAGC
CCTGGCCGTGAAAACGCAGGCTCAGGCGCTCCTGGCAAACAGCGGGAAGC
TCCTGCCCAGCCTTGTTACCGGCCTGGTGCAATGGGGAGCAGGTGGTGCT
GCTGCAGCCGGTGCCAGCGATTGCACGGATTCAAATCGAGATCGTGACCA
GCAGCGCATTGTCACCGCCCTGGATTCGTCGGACGAGAGCGATTTTGAGA
TACTCGAATCGGATGACTTTAAGGCAAGCTTTCTAGACCAT
BO12066.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 01:25:38
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG12576-RE | 1110 | CG12576-PE | 1..1107 | 17..1123 | 5535 | 100 | Plus |
CG12576-RF | 1110 | CG12576-PF | 1..1107 | 17..1123 | 5535 | 100 | Plus |
CG12576-RA | 1110 | CG12576-PA | 1..1107 | 17..1123 | 5535 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 01:25:40
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG12576-RE | 2404 | CG12576-RE | 415..1521 | 17..1123 | 5535 | 100 | Plus |
CG12576-RF | 2547 | CG12576-RF | 558..1664 | 17..1123 | 5535 | 100 | Plus |
CG12576-RA | 2407 | CG12576-RA | 418..1524 | 17..1123 | 5535 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 01:25:36
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 22475734..22476453 | 1123..404 | 3600 | 100 | Minus |
X | 23542271 | X | 22477179..22477484 | 404..99 | 1530 | 100 | Minus |
X | 23542271 | X | 22480511..22480594 | 100..17 | 420 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 01:25:37 has no hits.
BO12066.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 13:59:47 Download gff for
BO12066.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12576-RA | 1..1110 | 17..1127 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-07-28 15:30:11 Download gff for
BO12066.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12576-RA | 483..1584 | 22..1125 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 04:53:37 Download gff for
BO12066.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12576-RA | 423..1524 | 22..1125 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 13:59:47 Download gff for
BO12066.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12576-RA | 470..1592 | 9..1131 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 02:25:14 Download gff for
BO12066.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12576-RA | 423..1524 | 22..1125 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 02:25:14 Download gff for
BO12066.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 22475732..22476452 | 405..1125 | 99 | <- | Minus |
X | 22477179..22477483 | 100..404 | 100 | <- | Minus |
X | 22480512..22480589 | 22..99 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 04:53:37 Download gff for
BO12066.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 21877568..21878288 | 405..1125 | 99 | <- | Minus |
arm_X | 21879015..21879319 | 100..404 | 100 | <- | Minus |
arm_X | 21882348..21882425 | 22..99 | 100 | | Minus |
BO12066.pep Sequence
Translation from 16 to 1141
> BO12066.pep
MFQVLPRPSRSTFHCIAAAVVTVVLMSWARPLGVLFLGLLGYWIYWTRCS
FRVVPTDELRGKINTWLQRIDDWRHRSPSMFCLASSGCLGTLAVLGHLIS
GSTLVLTILVVSALVSTKYTFKLLKIEHRDFQWSEKLNYNNLEAEAEDEF
LPDVNESNLFVLERASDVATISSPTDANDEDDDDRSDDVPSELLIPDAIP
EIDEQSTDEDDELAPLAPKRQEKLQPQEQPAKESEDMNFRKSHFKRDSSL
STSSSSEESLSKGLQFPDHTTVDATGNPQLRQITAGPDPAGELVALAVKT
QAQALLANSGKLLPSLVTGLVQWGAGGAAAAGASDCTDSNRDRDQQRIVT
ALDSSDESDFEILESDDFKASFLDH
BO12066.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:31:02
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG12576-PE | 369 | CG12576-PE | 1..369 | 1..369 | 1897 | 100 | Plus |
CG12576-PF | 369 | CG12576-PF | 1..369 | 1..369 | 1897 | 100 | Plus |
CG12576-PA | 369 | CG12576-PA | 1..369 | 1..369 | 1897 | 100 | Plus |
CG12576-PB | 290 | CG12576-PB | 1..290 | 80..369 | 1463 | 100 | Plus |