Clone Sequence Records
BO12068.3prime Sequence
906 bp (820 high quality bases) assembled on 2006-04-18
> BO12068.3prime
ATGGTCTAGAAAGCTTGCTGATCCTTTCAGTTTCTTCTTGGGATTGTTGC
GCGTCTGATCGGTGGGTGCCGATGGTGGCAGCTCTCGATATTGATTAATC
TCCTCATTATCTGGCACTCGCGAGAGGAAGTCCAATAGCTCGTTGTTGGG
AATGGTATTGGGTCTCAGCAAACGTCTGGAGAACTTCATCAGGCCCCAAA
AGAGCAGCAGCCAGCGGAGCGGGACAAAATGCAAGACCAGAATGGCGCCC
AATAGCAAAACCACAGCCAGCCAGGTCAGTTCGGGGACGGAAAAGTTGAA
TGTGTTAATGGTGCTCTCGCCTAAAGAAGCCAGGTAGCCGATGGTATTCT
GTACCGTTTGGGAGACTTCTTGAATGGCCTGTAATCTCTCCTTGATGGAC
TTCTTTTCCTCCTTCTCCTTGTCATCATCATCATCTTCATCGTACTCATA
GTCGTAGTGAGCAGCTGCATCTGTGGTGCCCGTTATAAGGCGAACCAGCC
AGTTTTTAAGTATGATGAGCAGTAGAACTAGAGGTACTGTCTCCAGATCG
CCGTAGACACAGGCGACTATCCAAAAGACGAAAGCTATGCTGGATCGCAC
AGGAGATTCCCACTCGAAACAGCTCTGGACATAGCGCGCTGCATCTAGGA
TATCCATGATTATCTCCTTGAGTCTATTGACGTTGCGCAGGAAGAGCTGT
CGCTTGAACTTGGCCTCCTGCTGGATGAGCTTTTCCTCCTTGGGCTGCAG
GGCTCGACACACGGCACGGATCTCGCTCCAGACTACCGTCAGTTCCAGCT
GAATTTGCGGTGAGTTTCCTTTGGCCCGCACACAGAGATTCTTGTCCTTC
AGCGTATACCATCGCTTGACTCCACTTTTGATCTTTAGGAGGGGAATGAC
TAGCTT
BO12068.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:36:26
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG15078-PA | 2790 | Mctp-RA | 1900..2787 | 906..19 | 4415 | 99.8 | Minus |
CG15078-PB | 1791 | Mctp-RB | 901..1788 | 906..19 | 4415 | 99.8 | Minus |
CG15078-PC | 2823 | Mctp-RC | 1933..2820 | 906..19 | 4415 | 99.8 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 12:10:14
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Mctp-RG | 4123 | CG15078-RG | 2309..3196 | 906..19 | 4425 | 99.9 | Minus |
Mctp-RF | 4223 | CG15078-RF | 2252..3139 | 906..19 | 4425 | 99.9 | Minus |
Mctp-RE | 4015 | CG15078-RE | 2201..3088 | 906..19 | 4425 | 99.9 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 12:10:08
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 18772618..18772899 | 906..625 | 1395 | 99.6 | Minus |
2R | 25286936 | 2R | 18773398..18773605 | 304..97 | 1040 | 100 | Minus |
2R | 25286936 | 2R | 18773131..18773335 | 509..305 | 1010 | 99.5 | Minus |
2R | 25286936 | 2R | 18772958..18773077 | 625..506 | 600 | 100 | Minus |
2R | 25286936 | 2R | 18773663..18773740 | 96..19 | 390 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-12 12:10:11 has no hits.
BO12068.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:25:03 Download gff for
BO12068.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG33146-PA | 901..1791 | 18..906 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 04:56:09 Download gff for
BO12068.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG15078-PC | 1933..2823 | 18..906 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 03:01:55 Download gff for
BO12068.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Mctp-RB | 1010..1897 | 19..906 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 13:57:20 Download gff for
BO12068.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Mctp-RE | 2201..3088 | 19..906 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 13:57:20 Download gff for
BO12068.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 18772618..18772898 | 626..906 | 99 | -> | Minus |
2R | 18772958..18773077 | 506..625 | 100 | -> | Minus |
2R | 18773135..18773335 | 305..505 | 100 | -> | Minus |
2R | 18773398..18773605 | 97..304 | 100 | -> | Minus |
2R | 18773663..18773740 | 19..96 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 03:01:55 Download gff for
BO12068.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 14660123..14660403 | 626..906 | 99 | -> | Minus |
arm_2R | 14660463..14660582 | 506..625 | 100 | -> | Minus |
arm_2R | 14660640..14660840 | 305..505 | 100 | -> | Minus |
arm_2R | 14660903..14661110 | 97..304 | 100 | -> | Minus |
arm_2R | 14661168..14661245 | 19..96 | 100 | | Minus |
BO12068.5prime Sequence
903 bp (812 high quality bases) assembled on 2006-04-18
> BO12068.5prime
GAAGTTATCAGTCGACATGTTGGGCAACAGTTGGCCCGGTTGCAAGCGGG
CTCCTCGCATGGTGCTCAAACATGTGAGGCGGCAGCACGAGGAGTTGCGG
GAGCAGCTGGAGCAGGGATGCGACGATCTCATGGAGGTGGCCGAGTCTTA
TTTTCCGGATGTCTTGCAGCATTTCCAGCGCAACTCGAAACTGGCTGAGT
CATCGAAGCGATTGAAGTCACAGATCTGGAGCTCAGTGGTTACCATATTG
CTGGTTAAAGCCAAGGATTTGCCCTTAGCTGAAGATGGCAGCAAGCTGAA
TGATACTCACTTCAAATTCAGATTGGGCAATGAGAAGTACAAGAGCAAGT
CTTCCTGGACGGAACGCTGGCTGGAGCAGTTCGACTTGCACCTGTTTGAT
GAAGATCAAAACCTGGAGATCGCACTTTGGAACCGGAACACCCTCTATGG
CAAAGCCATTATTGACCTCAGCGTTTTTCAGCGCGAAAACACGCATGGCA
TTTGGAAACCTCTGGAAGATTGCCCTGGTGAGGTCCACCTTATGCTCACT
ATAAGTGGAACCACTGCCTTGGAGACGATCAGCGATCTGAAGGCCTTCAA
GGAGGATCCTCGAGAGGCTCAATTGCTAAGGGAAAGATATAAATTCCTAA
GATGCCTCCAAAACCTCCGCGATGTGGGTCACCTAACTGTAAAGGTCTTT
GGAGCCACTGGACTGGCTGCAGCGGATATAGGTGGAAAATCCGATCCTTT
TTGTGTATTGGAACTGGGTAACGCCCGACTGCAAACCCAAACTGAGTATA
AAACACTCACTCCTAATTGGAATAAGATATTTACTTTTCATGTTAAAGAC
ATCACGCAGGTCCTGGAGATCACCGTTTTCGATGAGGATCGCGACCATCG
CGT
BO12068.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:36:26
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG15078-PB | 1791 | Mctp-RB | 1..887 | 17..903 | 4385 | 99.7 | Plus |
CG15078-PC | 2823 | Mctp-RC | 1152..1919 | 136..903 | 3790 | 99.7 | Plus |
CG15078-PA | 2790 | Mctp-RA | 1152..1886 | 169..903 | 3625 | 99.7 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-04 05:35:21
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Mctp-RB | 2824 | CG15078-RB | 109..996 | 16..903 | 4410 | 99.8 | Plus |
Mctp-RG | 4123 | CG15078-RG | 1561..2295 | 169..903 | 3645 | 99.7 | Plus |
Mctp-RF | 4223 | CG15078-RF | 1504..2238 | 169..903 | 3645 | 99.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-04 05:35:16
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 18771950..18772470 | 317..837 | 2605 | 100 | Plus |
2R | 25286936 | 2R | 18771586..18771891 | 16..321 | 1530 | 100 | Plus |
2R | 25286936 | 2R | 18772541..18772604 | 840..903 | 320 | 100 | Plus |
Blast to na_te.dros performed 2015-02-04 05:35:19
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
gtwin | 7411 | gtwin GTWIN 7411bp | 1756..1796 | 246..286 | 115 | 75.6 | Plus |
BO12068.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:25:04 Download gff for
BO12068.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG33146-PA | 1..887 | 17..903 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 04:56:10 Download gff for
BO12068.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG15078-PB | 1..887 | 17..903 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-10 07:15:31 Download gff for
BO12068.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Mctp-RB | 109..996 | 16..903 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-04 06:47:13 Download gff for
BO12068.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Mctp-RB | 109..996 | 16..903 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-04 06:47:13 Download gff for
BO12068.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 18771586..18771891 | 16..321 | 100 | -> | Plus |
2R | 18771955..18772470 | 322..837 | 100 | -> | Plus |
2R | 18772539..18772604 | 838..903 | 96 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-10 07:15:31 Download gff for
BO12068.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 14660044..14660109 | 838..903 | 96 | | Plus |
arm_2R | 14659091..14659396 | 16..321 | 100 | -> | Plus |
arm_2R | 14659460..14659975 | 322..837 | 100 | -> | Plus |
BO12068.complete Sequence
1822 bp assembled on 2008-01-17
GenBank Submission: FJ632298
> BO12068.complete
GAAGTTATCAGTCGACATGTTGGGCAACAGTTGGCCCGGTTGCAAGCGGG
CTCCTCGCATGGTGCTCAAACATGTGAGGCGGCAGCACGAGGAGTTGCGG
GAGCAGCTGGAGCAGGGATGCGACGATCTCATGGAGGTGGCCGAGTCTTA
TTTTCCGGATGTCTTGCAGCATTTCCAGCGCAACTCGAAACTGGCTGAGT
CATCGAAGCGATTGAAGTCACAGATCTGGAGCTCAGTGGTTACCATATTG
CTGGTTAAAGCCAAGGATTTGCCCTTAGCTGAAGATGGCAGCAAGCTGAA
TGATACTCACTTCAAATTCAGATTGGGCAATGAGAAGTACAAGAGCAAGT
CTTCCTGGACGGAACGCTGGCTGGAGCAGTTCGACTTGCACCTGTTTGAT
GAAGATCAAAACCTGGAGATCGCACTTTGGAACCGGAACACCCTCTATGG
CAAAGCCATTATTGACCTCAGCGTTTTTCAGCGCGAAAACACGCATGGCA
TTTGGAAACCTCTGGAAGATTGCCCTGGTGAGGTCCACCTTATGCTCACT
ATAAGTGGAACCACTGCCTTGGAGACGATCAGCGATCTGAAGGCCTTCAA
GGAGGATCCTCGAGAGGCTCAATTGCTAAGGGAAAGATATAAATTCCTAA
GATGCCTCCAAAACCTCCGCGATGTGGGTCACCTAACTGTAAAGGTCTTT
GGAGCCACTGGACTGGCTGCAGCGGATATAGGTGGAAAATCCGATCCTTT
TTGTGTATTGGAACTGGGTAACGCCCGACTGCAAACCCAAACTGAGTATA
AAACACTCACTCCTAATTGGAATAAGATATTTACTTTCAATGTTAAAGAC
ATCACGCAGGTCCTGGAGATCACCGTTTTCGATGAGGATCGCGACCATCG
CGTAGAGTTCCTGGGCAAGCTAGTCATTCCCCTCCTAAGGATCAAAAGTG
GAGTCAAGCGATGGTATACGCTGAAGGACAAGAATCTCTGTGTGCGGGCC
AAAGGAAACTCACCGCAAATTCAGCTGGAACTGACGGTAGTCTGGAGCGA
GATCCGTGCCGTGTGTCGAGCCCTGCAGCCCAAGGAGGAAAAGCTCATCC
AGCAGGAGGCCAAGTTCAAGCGACAGCTCTTCCTGCGCAACGTCAATAGA
CTCAAGGAGATAATCATGGATATCCTAGATGCAGCGCGCTATGTCCAGAG
CTGTTTCGAGTGGGAATCTCCTGTGCGATCCAGCATAGCTTTCGTCTTTT
GGATAGTCGCCTGTGTCTACGGCGATCTGGAGACAGTACCTCTAGTTCTA
CTGCTCATCATACTTAAAAACTGGCTGGTTCGCCTTATAACGGGCACCAC
AGATGCAGCTGCTCACTACGACTATGAGTACGATGAAGATGATGATGATG
ACAAGGAGAAGGAGGAAAAGAAGTCCATCAAGGAGAGATTACAGGCCATT
CAAGAAGTCTCCCAAACGGTACAGAATACCATCGGCTACCTGGCTTCTTT
AGGCGAGAGCACCATTAACACATTCAACTTTTCCGTCCCCGAACTGACCT
GGCTGGCTGTGGTTTTGCTATTGGGCGCCATTCTGGTCTTGCATTTTGTC
CCGCTCCGCTGGCTGCTGCTCTTTTGGGGCCTGATGAAGTTCTCCAGACG
TTTGCTGAGACCCAATACCATTCCCAACAACGAGCTATTGGACTTCCTCT
CGCGAGTGCCAGATAATGAGGAGATTAATCAATATCGAGAGCTGCCACCA
TCGGCACCCACCGATCAGACGCGCAACAATCCCAAGAAGAAACTGAAAGG
ATCAGCAAGCTTTCTAGACCAT
BO12068.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 00:58:22
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Mctp-RB | 1791 | CG15078-PB | 1..1788 | 17..1804 | 8940 | 100 | Plus |
Mctp-RG | 2739 | CG15078-PG | 1101..2736 | 169..1804 | 8180 | 100 | Plus |
Mctp-RF | 2682 | CG15078-PF | 1044..2679 | 169..1804 | 8180 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 00:58:23
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Mctp-RB | 2824 | CG15078-RB | 109..1897 | 16..1804 | 8945 | 100 | Plus |
Mctp-RG | 4123 | CG15078-RG | 1561..3196 | 169..1804 | 8180 | 100 | Plus |
Mctp-RF | 4223 | CG15078-RF | 1504..3139 | 169..1804 | 8180 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 00:58:19
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 18771950..18772470 | 317..837 | 2605 | 100 | Plus |
2R | 25286936 | 2R | 18772539..18772899 | 838..1198 | 1805 | 100 | Plus |
2R | 25286936 | 2R | 18771586..18771891 | 16..321 | 1530 | 100 | Plus |
2R | 25286936 | 2R | 18773398..18773605 | 1519..1726 | 1040 | 100 | Plus |
2R | 25286936 | 2R | 18773131..18773335 | 1314..1518 | 1010 | 99.5 | Plus |
2R | 25286936 | 2R | 18772958..18773077 | 1198..1317 | 600 | 100 | Plus |
2R | 25286936 | 2R | 18773663..18773740 | 1727..1804 | 390 | 100 | Plus |
Blast to na_te.dros performed 2014-11-28 00:58:21
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
gtwin | 7411 | gtwin GTWIN 7411bp | 1756..1796 | 246..286 | 115 | 75.6 | Plus |
BO12068.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 13:59:48 Download gff for
BO12068.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Mctp-RB | 1..1791 | 17..1805 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-07-28 15:34:10 Download gff for
BO12068.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Mctp-RB | 104..1886 | 22..1806 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:35:26 Download gff for
BO12068.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Mctp-RB | 115..1897 | 22..1806 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 13:59:48 Download gff for
BO12068.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Mctp-RB | 98..1886 | 16..1804 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:41:26 Download gff for
BO12068.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Mctp-RB | 115..1897 | 22..1806 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:41:26 Download gff for
BO12068.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 18771592..18771891 | 22..321 | 100 | -> | Plus |
2R | 18771955..18772470 | 322..837 | 100 | -> | Plus |
2R | 18772539..18772898 | 838..1197 | 100 | -> | Plus |
2R | 18772958..18773077 | 1198..1317 | 100 | -> | Plus |
2R | 18773135..18773335 | 1318..1518 | 100 | -> | Plus |
2R | 18773398..18773605 | 1519..1726 | 100 | -> | Plus |
2R | 18773663..18773740 | 1727..1806 | 97 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:35:26 Download gff for
BO12068.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 14659097..14659396 | 22..321 | 100 | -> | Plus |
arm_2R | 14659460..14659975 | 322..837 | 100 | -> | Plus |
arm_2R | 14660044..14660403 | 838..1197 | 100 | -> | Plus |
arm_2R | 14660463..14660582 | 1198..1317 | 100 | -> | Plus |
arm_2R | 14660640..14660840 | 1318..1518 | 100 | -> | Plus |
arm_2R | 14660903..14661110 | 1519..1726 | 100 | -> | Plus |
arm_2R | 14661168..14661245 | 1727..1806 | 97 | | Plus |
BO12068.pep Sequence
Translation from 16 to 1822
> BO12068.pep
MLGNSWPGCKRAPRMVLKHVRRQHEELREQLEQGCDDLMEVAESYFPDVL
QHFQRNSKLAESSKRLKSQIWSSVVTILLVKAKDLPLAEDGSKLNDTHFK
FRLGNEKYKSKSSWTERWLEQFDLHLFDEDQNLEIALWNRNTLYGKAIID
LSVFQRENTHGIWKPLEDCPGEVHLMLTISGTTALETISDLKAFKEDPRE
AQLLRERYKFLRCLQNLRDVGHLTVKVFGATGLAAADIGGKSDPFCVLEL
GNARLQTQTEYKTLTPNWNKIFTFNVKDITQVLEITVFDEDRDHRVEFLG
KLVIPLLRIKSGVKRWYTLKDKNLCVRAKGNSPQIQLELTVVWSEIRAVC
RALQPKEEKLIQQEAKFKRQLFLRNVNRLKEIIMDILDAARYVQSCFEWE
SPVRSSIAFVFWIVACVYGDLETVPLVLLLIILKNWLVRLITGTTDAAAH
YDYEYDEDDDDDKEKEEKKSIKERLQAIQEVSQTVQNTIGYLASLGESTI
NTFNFSVPELTWLAVVLLLGAILVLHFVPLRWLLLFWGLMKFSRRLLRPN
TIPNNELLDFLSRVPDNEEINQYRELPPSAPTDQTRNNPKKKLKGSASFL
DH
BO12068.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:21:37
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Mctp-PB | 596 | CG15078-PB | 1..596 | 1..596 | 3108 | 100 | Plus |
Mctp-PD | 982 | CG15078-PD | 364..914 | 48..598 | 2835 | 99.3 | Plus |
Mctp-PG | 912 | CG15078-PG | 364..912 | 48..596 | 2832 | 99.5 | Plus |
Mctp-PF | 893 | CG15078-PF | 345..893 | 48..596 | 2832 | 99.5 | Plus |
Mctp-PE | 954 | CG15078-PE | 406..954 | 48..596 | 2832 | 99.5 | Plus |