Clone Sequence Records
BO12071.3prime Sequence
560 bp (559 high quality bases) assembled on 2006-04-20
> BO12071.3prime
ATGGTCTAGAAAGCTTGCCTCTTGATCGTCAGAAGATTCAGGTGAACTCC
CGGCTCGTTTTTTCTTTTTTTGTGGAGCTCCCTGCTTTTGATCCTCGCTG
CTGTCGCTGTCCGAGCCACTTCCACTGGAGTCTGACGAGCTGCCTTCCTC
GTCGTCCGAATCCGAACTGGAGCTGCTCGAGTCTGATTCGGATGAGGAGC
CCGATTCGCTGCTGCTGTCTGAGCTGTCCGACGAGCTGGAGGAGGACGAG
GAGCTCTTGCTCGTTTTCCGCTTTCGACGGACCTTCTTTCCTTCCGAGGA
AGCCACTTCCGAGTGCTCCTCCACCTGGTTCTTGGGTGCGTCAGCCTCCT
TTTGGGACATACGCTTGCTTAGCTGCTTGGTACGCGAGCTCCGGTGGACG
TATTTGCGCTTCTCCTTGCACTCATAGCTCCAGTGTCCGATCTGCAGGCA
CTTCTGGCACCGGATGCCATTGGGAAAGTCTGCTGCTTGCTTTGCGGATC
TCTTCTTTTGCGCTAATTTGCGGGCAGCTAGGCCCACCAAAGTCATGTCG
ACTGATAACT
BO12071.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:36:29
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5516-PA | 531 | CG5516-RA | 1..528 | 546..19 | 2640 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 22:57:43
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5516-RB | 733 | CG5516-RB | 90..617 | 546..19 | 2640 | 100 | Minus |
CG5516-RA | 811 | CG5516-RA | 168..695 | 546..19 | 2640 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 22:57:37
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 15964163..15964645 | 501..19 | 2415 | 100 | Minus |
3R | 32079331 | 3R | 15964051..15964097 | 546..500 | 235 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-10 22:57:40 has no hits.
BO12071.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:25:07 Download gff for
BO12071.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5516-PA | 1..531 | 15..546 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 04:56:14 Download gff for
BO12071.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5516-PA | 1..531 | 15..546 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 07:50:17 Download gff for
BO12071.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5516-RA | 165..700 | 15..555 | 98 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 00:14:16 Download gff for
BO12071.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5516-RA | 163..698 | 15..555 | 98 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 00:14:16 Download gff for
BO12071.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 15964046..15964097 | 500..555 | 92 | -> | Minus |
3R | 15964165..15964648 | 15..499 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 07:50:17 Download gff for
BO12071.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 11789768..11789819 | 500..555 | 92 | -> | Minus |
arm_3R | 11789887..11790370 | 15..499 | 99 | | Minus |
BO12071.5prime Sequence
560 bp (559 high quality bases) assembled on 2006-04-18
> BO12071.5prime
GAAGTTATCAGTCGACATGACTTTGGTGGGCCTAGCTGCCCGCAAATTAG
CGCAAAAGAAGAGATCCGCAAAGCAAGCAGCAGACTTTCCCAATGGCATC
CGGTGCCAGAAGTGCCTGCAGATCGGACACTGGAGCTATGAGTGCAAGGA
GAAGCGCAAATACGTCCACCGGAGCTCGCGTACCAAGCAGCTAAGCAAGC
GTATGTCCCAAAAGGAGGCTGACGCACCCAAGAACCAGGTGGAGGAGCAC
TCGGAAGTGGCTTCCTCGGAAGGAAAGAAGGTCCGTCGAAAGCGGAAAAC
GAGCAAGAGCTCCTCGTCCTCCTCCAGCTCGTCGGACAGCTCAGACAGCA
GCAGCGAATCGGGCTCCTCATCCGAATCAGACTCGAGCAGCTCCAGTTCG
GATTCGGACGACGAGGAAGGCAGCTCGTCAGACTCCAGTGGAAGTGGCTC
GGACAGCGACAGCAGCGAGGATCAAAAGCAGGGAGCTCCACAAAAAAAGA
AAAAACGAGCCGGGAGTTCACCTGAATCTTCTGACGATCAAGAGGCAAGC
TTTCTAGACC
BO12071.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:36:30
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5516-PA | 531 | CG5516-RA | 1..528 | 17..544 | 2640 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 05:29:32
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5516-RB | 733 | CG5516-RB | 90..617 | 17..544 | 2640 | 100 | Plus |
CG5516-RA | 811 | CG5516-RA | 168..695 | 17..544 | 2640 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 05:29:27
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 15964163..15964645 | 62..544 | 2415 | 100 | Plus |
3R | 32079331 | 3R | 15964051..15964097 | 17..63 | 235 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-12 05:29:29 has no hits.
BO12071.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:25:08 Download gff for
BO12071.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5516-PA | 1..531 | 17..548 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 04:56:16 Download gff for
BO12071.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5516-PA | 1..531 | 17..548 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 03:59:57 Download gff for
BO12071.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5516-RA | 165..700 | 8..548 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 07:32:31 Download gff for
BO12071.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5516-RA | 163..698 | 8..548 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 07:32:31 Download gff for
BO12071.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 15964046..15964097 | 8..63 | 92 | -> | Plus |
3R | 15964165..15964648 | 64..548 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 03:59:57 Download gff for
BO12071.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 11789768..11789819 | 8..63 | 92 | -> | Plus |
arm_3R | 11789887..11790370 | 64..548 | 99 | | Plus |
BO12071.complete Sequence
562 bp assembled on 2006-10-11
GenBank Submission: FJ632299
> BO12071.complete
GAAGTTATCAGTCGACATGACTTTGGTGGGCCTAGCTGCCCGCAAATTAG
CGCAAAAGAAGAGATCCGCAAAGCAAGCAGCAGACTTTCCCAATGGCATC
CGGTGCCAGAAGTGCCTGCAGATCGGACACTGGAGCTATGAGTGCAAGGA
GAAGCGCAAATACGTCCACCGGAGCTCGCGTACCAAGCAGCTAAGCAAGC
GTATGTCCCAAAAGGAGGCTGACGCACCCAAGAACCAGGTGGAGGAGCAC
TCGGAAGTGGCTTCCTCGGAAGGAAAGAAGGTCCGTCGAAAGCGGAAAAC
GAGCAAGAGCTCCTCGTCCTCCTCCAGCTCGTCGGACAGCTCAGACAGCA
GCAGCGAATCGGGCTCCTCATCCGAATCAGACTCGAGCAGCTCCAGTTCG
GATTCGGACGACGAGGAAGGCAGCTCGTCAGACTCCAGTGGAAGTGGCTC
GGACAGCGACAGCAGCGAGGATCAAAAGCAGGGAGCTCCACAAAAAAAGA
AAAAACGAGCCGGGAGTTCACCTGAATCTTCTGACGATCAAGAGGCAAGC
TTTCTAGACCAT
BO12071.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 07:39:23
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5516-RB | 531 | CG5516-PB | 1..528 | 17..544 | 2640 | 100 | Plus |
CG5516-RA | 531 | CG5516-PA | 1..528 | 17..544 | 2640 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 07:39:25
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5516-RB | 733 | CG5516-RB | 90..617 | 17..544 | 2640 | 100 | Plus |
CG5516-RA | 811 | CG5516-RA | 168..695 | 17..544 | 2640 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 07:39:21
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 15964163..15964645 | 62..544 | 2415 | 100 | Plus |
3R | 32079331 | 3R | 15964051..15964097 | 17..63 | 235 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 07:39:22 has no hits.
BO12071.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 13:41:04 Download gff for
BO12071.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5516-RA | 1..531 | 17..548 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:03:53 Download gff for
BO12071.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5516-RA | 159..694 | 8..548 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 05:19:50 Download gff for
BO12071.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5516-RA | 170..697 | 17..546 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 13:41:04 Download gff for
BO12071.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5516-RA | 159..694 | 8..548 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 08:14:42 Download gff for
BO12071.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5516-RA | 168..695 | 17..546 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 08:14:42 Download gff for
BO12071.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 15964051..15964097 | 17..63 | 100 | -> | Plus |
3R | 15964165..15964645 | 64..546 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 05:19:50 Download gff for
BO12071.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 11789773..11789819 | 17..63 | 100 | -> | Plus |
arm_3R | 11789887..11790367 | 64..546 | 99 | | Plus |
BO12071.pep Sequence
Translation from 16 to 562
> BO12071.pep
MTLVGLAARKLAQKKRSAKQAADFPNGIRCQKCLQIGHWSYECKEKRKYV
HRSSRTKQLSKRMSQKEADAPKNQVEEHSEVASSEGKKVRRKRKTSKSSS
SSSSSSDSSDSSSESGSSSESDSSSSSSDSDDEEGSSSDSSGSGSDSDSS
EDQKQGAPQKKKKRAGSSPESSDDQEASFLDH
BO12071.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:51:39
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5516-PB | 176 | CG5516-PB | 1..176 | 1..176 | 873 | 100 | Plus |
CG5516-PA | 176 | CG5516-PA | 1..176 | 1..176 | 873 | 100 | Plus |
CG3918-PA | 321 | CG3918-PA | 145..281 | 44..174 | 179 | 36 | Plus |
PNUTS-PA | 628 | CG33526-PA | 282..415 | 51..172 | 161 | 36.5 | Plus |
PNUTS-PB | 628 | CG33526-PB | 282..415 | 51..172 | 161 | 36.5 | Plus |
PNUTS-PA | 628 | CG33526-PA | 279..398 | 60..178 | 159 | 36.7 | Plus |
PNUTS-PA | 628 | CG33526-PA | 327..448 | 52..172 | 157 | 36.6 | Plus |
PNUTS-PA | 628 | CG33526-PA | 281..422 | 44..176 | 152 | 31.7 | Plus |