Clone BO12071 Report

Search the DGRC for BO12071

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:120
Well:71
Vector:pDNR-Dual
Associated Gene/TranscriptCG5516-RA
Protein status:BO12071.pep: validated full length
Sequenced Size:562

Clone Sequence Records

BO12071.3prime Sequence

560 bp (559 high quality bases) assembled on 2006-04-20

> BO12071.3prime
ATGGTCTAGAAAGCTTGCCTCTTGATCGTCAGAAGATTCAGGTGAACTCC
CGGCTCGTTTTTTCTTTTTTTGTGGAGCTCCCTGCTTTTGATCCTCGCTG
CTGTCGCTGTCCGAGCCACTTCCACTGGAGTCTGACGAGCTGCCTTCCTC
GTCGTCCGAATCCGAACTGGAGCTGCTCGAGTCTGATTCGGATGAGGAGC
CCGATTCGCTGCTGCTGTCTGAGCTGTCCGACGAGCTGGAGGAGGACGAG
GAGCTCTTGCTCGTTTTCCGCTTTCGACGGACCTTCTTTCCTTCCGAGGA
AGCCACTTCCGAGTGCTCCTCCACCTGGTTCTTGGGTGCGTCAGCCTCCT
TTTGGGACATACGCTTGCTTAGCTGCTTGGTACGCGAGCTCCGGTGGACG
TATTTGCGCTTCTCCTTGCACTCATAGCTCCAGTGTCCGATCTGCAGGCA
CTTCTGGCACCGGATGCCATTGGGAAAGTCTGCTGCTTGCTTTGCGGATC
TCTTCTTTTGCGCTAATTTGCGGGCAGCTAGGCCCACCAAAGTCATGTCG
ACTGATAACT

BO12071.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:36:29
Subject Length Description Subject Range Query Range Score Percent Strand
CG5516-PA 531 CG5516-RA 1..528 546..19 2640 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 22:57:43
Subject Length Description Subject Range Query Range Score Percent Strand
CG5516-RB 733 CG5516-RB 90..617 546..19 2640 100 Minus
CG5516-RA 811 CG5516-RA 168..695 546..19 2640 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 22:57:37
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 15964163..15964645 501..19 2415 100 Minus
3R 32079331 3R 15964051..15964097 546..500 235 100 Minus
Blast to na_te.dros performed on 2015-02-10 22:57:40 has no hits.

BO12071.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:25:07 Download gff for BO12071.3prime
Subject Subject Range Query Range Percent Splice Strand
CG5516-PA 1..531 15..546 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 04:56:14 Download gff for BO12071.3prime
Subject Subject Range Query Range Percent Splice Strand
CG5516-PA 1..531 15..546 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 07:50:17 Download gff for BO12071.3prime
Subject Subject Range Query Range Percent Splice Strand
CG5516-RA 165..700 15..555 98   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 00:14:16 Download gff for BO12071.3prime
Subject Subject Range Query Range Percent Splice Strand
CG5516-RA 163..698 15..555 98   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 00:14:16 Download gff for BO12071.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 15964046..15964097 500..555 92 -> Minus
3R 15964165..15964648 15..499 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 07:50:17 Download gff for BO12071.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 11789768..11789819 500..555 92 -> Minus
arm_3R 11789887..11790370 15..499 99   Minus

BO12071.5prime Sequence

560 bp (559 high quality bases) assembled on 2006-04-18

> BO12071.5prime
GAAGTTATCAGTCGACATGACTTTGGTGGGCCTAGCTGCCCGCAAATTAG
CGCAAAAGAAGAGATCCGCAAAGCAAGCAGCAGACTTTCCCAATGGCATC
CGGTGCCAGAAGTGCCTGCAGATCGGACACTGGAGCTATGAGTGCAAGGA
GAAGCGCAAATACGTCCACCGGAGCTCGCGTACCAAGCAGCTAAGCAAGC
GTATGTCCCAAAAGGAGGCTGACGCACCCAAGAACCAGGTGGAGGAGCAC
TCGGAAGTGGCTTCCTCGGAAGGAAAGAAGGTCCGTCGAAAGCGGAAAAC
GAGCAAGAGCTCCTCGTCCTCCTCCAGCTCGTCGGACAGCTCAGACAGCA
GCAGCGAATCGGGCTCCTCATCCGAATCAGACTCGAGCAGCTCCAGTTCG
GATTCGGACGACGAGGAAGGCAGCTCGTCAGACTCCAGTGGAAGTGGCTC
GGACAGCGACAGCAGCGAGGATCAAAAGCAGGGAGCTCCACAAAAAAAGA
AAAAACGAGCCGGGAGTTCACCTGAATCTTCTGACGATCAAGAGGCAAGC
TTTCTAGACC

BO12071.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:36:30
Subject Length Description Subject Range Query Range Score Percent Strand
CG5516-PA 531 CG5516-RA 1..528 17..544 2640 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 05:29:32
Subject Length Description Subject Range Query Range Score Percent Strand
CG5516-RB 733 CG5516-RB 90..617 17..544 2640 100 Plus
CG5516-RA 811 CG5516-RA 168..695 17..544 2640 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 05:29:27
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 15964163..15964645 62..544 2415 100 Plus
3R 32079331 3R 15964051..15964097 17..63 235 100 Plus
Blast to na_te.dros performed on 2015-02-12 05:29:29 has no hits.

BO12071.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:25:08 Download gff for BO12071.5prime
Subject Subject Range Query Range Percent Splice Strand
CG5516-PA 1..531 17..548 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 04:56:16 Download gff for BO12071.5prime
Subject Subject Range Query Range Percent Splice Strand
CG5516-PA 1..531 17..548 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 03:59:57 Download gff for BO12071.5prime
Subject Subject Range Query Range Percent Splice Strand
CG5516-RA 165..700 8..548 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 07:32:31 Download gff for BO12071.5prime
Subject Subject Range Query Range Percent Splice Strand
CG5516-RA 163..698 8..548 98   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 07:32:31 Download gff for BO12071.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 15964046..15964097 8..63 92 -> Plus
3R 15964165..15964648 64..548 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 03:59:57 Download gff for BO12071.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 11789768..11789819 8..63 92 -> Plus
arm_3R 11789887..11790370 64..548 99   Plus

BO12071.complete Sequence

562 bp assembled on 2006-10-11

GenBank Submission: FJ632299

> BO12071.complete
GAAGTTATCAGTCGACATGACTTTGGTGGGCCTAGCTGCCCGCAAATTAG
CGCAAAAGAAGAGATCCGCAAAGCAAGCAGCAGACTTTCCCAATGGCATC
CGGTGCCAGAAGTGCCTGCAGATCGGACACTGGAGCTATGAGTGCAAGGA
GAAGCGCAAATACGTCCACCGGAGCTCGCGTACCAAGCAGCTAAGCAAGC
GTATGTCCCAAAAGGAGGCTGACGCACCCAAGAACCAGGTGGAGGAGCAC
TCGGAAGTGGCTTCCTCGGAAGGAAAGAAGGTCCGTCGAAAGCGGAAAAC
GAGCAAGAGCTCCTCGTCCTCCTCCAGCTCGTCGGACAGCTCAGACAGCA
GCAGCGAATCGGGCTCCTCATCCGAATCAGACTCGAGCAGCTCCAGTTCG
GATTCGGACGACGAGGAAGGCAGCTCGTCAGACTCCAGTGGAAGTGGCTC
GGACAGCGACAGCAGCGAGGATCAAAAGCAGGGAGCTCCACAAAAAAAGA
AAAAACGAGCCGGGAGTTCACCTGAATCTTCTGACGATCAAGAGGCAAGC
TTTCTAGACCAT

BO12071.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 07:39:23
Subject Length Description Subject Range Query Range Score Percent Strand
CG5516-RB 531 CG5516-PB 1..528 17..544 2640 100 Plus
CG5516-RA 531 CG5516-PA 1..528 17..544 2640 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 07:39:25
Subject Length Description Subject Range Query Range Score Percent Strand
CG5516-RB 733 CG5516-RB 90..617 17..544 2640 100 Plus
CG5516-RA 811 CG5516-RA 168..695 17..544 2640 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 07:39:21
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 15964163..15964645 62..544 2415 100 Plus
3R 32079331 3R 15964051..15964097 17..63 235 100 Plus
Blast to na_te.dros performed on 2014-11-27 07:39:22 has no hits.

BO12071.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 13:41:04 Download gff for BO12071.complete
Subject Subject Range Query Range Percent Splice Strand
CG5516-RA 1..531 17..548 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:03:53 Download gff for BO12071.complete
Subject Subject Range Query Range Percent Splice Strand
CG5516-RA 159..694 8..548 98   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 05:19:50 Download gff for BO12071.complete
Subject Subject Range Query Range Percent Splice Strand
CG5516-RA 170..697 17..546 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 13:41:04 Download gff for BO12071.complete
Subject Subject Range Query Range Percent Splice Strand
CG5516-RA 159..694 8..548 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 08:14:42 Download gff for BO12071.complete
Subject Subject Range Query Range Percent Splice Strand
CG5516-RA 168..695 17..546 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 08:14:42 Download gff for BO12071.complete
Subject Subject Range Query Range Percent Splice Strand
3R 15964051..15964097 17..63 100 -> Plus
3R 15964165..15964645 64..546 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 05:19:50 Download gff for BO12071.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 11789773..11789819 17..63 100 -> Plus
arm_3R 11789887..11790367 64..546 99   Plus

BO12071.pep Sequence

Translation from 16 to 562

> BO12071.pep
MTLVGLAARKLAQKKRSAKQAADFPNGIRCQKCLQIGHWSYECKEKRKYV
HRSSRTKQLSKRMSQKEADAPKNQVEEHSEVASSEGKKVRRKRKTSKSSS
SSSSSSDSSDSSSESGSSSESDSSSSSSDSDDEEGSSSDSSGSGSDSDSS
EDQKQGAPQKKKKRAGSSPESSDDQEASFLDH

BO12071.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:51:39
Subject Length Description Subject Range Query Range Score Percent Strand
CG5516-PB 176 CG5516-PB 1..176 1..176 873 100 Plus
CG5516-PA 176 CG5516-PA 1..176 1..176 873 100 Plus
CG3918-PA 321 CG3918-PA 145..281 44..174 179 36 Plus
PNUTS-PA 628 CG33526-PA 282..415 51..172 161 36.5 Plus
PNUTS-PB 628 CG33526-PB 282..415 51..172 161 36.5 Plus
PNUTS-PA 628 CG33526-PA 279..398 60..178 159 36.7 Plus
PNUTS-PA 628 CG33526-PA 327..448 52..172 157 36.6 Plus
PNUTS-PA 628 CG33526-PA 281..422 44..176 152 31.7 Plus