Clone Sequence Records
BO12073.3prime Sequence
777 bp (765 high quality bases) assembled on 2006-04-18
> BO12073.3prime
ATGGTCTAGAAAGCTTGCCATTTGGTTCAGTGGACGCAGGCCAAGGAGCT
CCATTCCGTGTCGCAGTGTTTTTTTGGCAGCGTGAAAAAGAAGCAGGCGT
TGGAGTTGCTTCTCTAGGCTGGACTCTTGTTTCACAGGCAATCTTTTCAG
CGCTTGACTGGTGGCATTGCACAATCCAAAGAGATAGTTGACAAGGACAC
AAGCCTCCAGTTGTTCCTTCGATTGCCAAACGCTTTGATCGAAACGTGCC
AGTGCGTAGAGCAGATCCAAAGCATCCGCAGGCTCCGTAGAGAAATGCTT
CCAGTCGGGCTTAATGTCGTCCAGATCTACATCTCGGAAATTATCCAGCA
AACTGTGCAGGCGGCAGTGTGTGTATTGAAGCTTGATTCCTGTGTCACCA
TTTACTTGGAGTGCCTGCTGCCAGCTGAACTCGTGATCTCGTTGCCTTCG
CTGCTTAAGGACATTGACCAGGACGGCTGACACGCCCAAAATATCACATA
CATGTTCATCATCCAGATTGTAATTTTCTCTGGTAGTGGCACTTATGTTT
CGCTTTTCCCGCATTATGTCTCGTGCTTCATCTAGGACATCTTTTAGAAA
GATTGCCTTTCCCTGACGAGTGCTCATCCCATAAATGCGTCCAAATTTCA
CATGTTGCAGCTGTTCCAGACTTAGGCGGTCATCCAGGGCTGCCGTTGTT
TTAAAAAGGGCATTAAAAGATCGCTTGACATTGTCCCGACGTAGAGCAAG
CGTGAGACTGGAACTGGAAGTCCTCCA
BO12073.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:36:32
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG10092-PA | 1785 | CG10092-RA | 1083..1782 | 718..19 | 3500 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 12:18:49
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG10092-RB | 2748 | CG10092-RB | 1078..1844 | 777..19 | 3635 | 99 | Minus |
CG10092-RA | 1934 | CG10092-RA | 1078..1844 | 777..19 | 3635 | 99 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 12:18:46
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 7888563..7888929 | 536..170 | 1835 | 100 | Minus |
3R | 32079331 | 3R | 7888277..7888501 | 757..537 | 925 | 98.2 | Minus |
3R | 32079331 | 3R | 7889095..7889246 | 170..19 | 760 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-11 12:18:47 has no hits.
BO12073.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:25:11 Download gff for
BO12073.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10092-PA | 1017..1785 | 18..776 | 98 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 04:56:21 Download gff for
BO12073.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10092-PA | 1017..1785 | 18..776 | 98 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-24 08:46:14 Download gff for
BO12073.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10092-RA | 1079..1844 | 19..776 | 98 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 13:53:26 Download gff for
BO12073.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10092-RA | 1079..1844 | 19..776 | 98 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 13:53:26 Download gff for
BO12073.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 7889096..7889246 | 19..169 | 100 | | Minus |
3R | 7888254..7888501 | 537..776 | 96 | -> | Minus |
3R | 7888563..7888929 | 170..536 | 100 | -> | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 08:46:14 Download gff for
BO12073.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 3713976..3714223 | 537..776 | 96 | -> | Minus |
arm_3R | 3714285..3714651 | 170..536 | 100 | -> | Minus |
arm_3R | 3714818..3714968 | 19..169 | 100 | | Minus |
BO12073.5prime Sequence
914 bp (740 high quality bases) assembled on 2006-04-18
> BO12073.5prime
GAAGTTATCACTCGACATGGAACGGCCACACATTGGCTTGTTTACCTATA
AAATCTGTAATGCATTGAAAGAACTAACGGAAAGGATGATTCGCTTACGG
CAAGCAATTTGTGAGCAGCTGCCGCATCTCAAGAATGCCTGCTATGCCCT
GGAGGTGCCTGTCAAGAAACAACAGCTACAGAATAGCCGACGTCCAACTG
TGGAGTGGATTCTGCCCTCTGCGTTTGCGCAACAGGAGGTGGAACTACTG
GACTCATTGAAGAAGCGCAGATTCGAGGCCTATGTGGAAAACGTTCGGAT
TGTACCTAGCGCTGGGCGCAGTGCAGCCAAAATCGAGTTTCAGCTGCAGC
CACAGGTCTTTGTAGAACAGCTCCTCCAAACTAAAGAGATTGCTTTACAT
CCTTCGCCCTTTGCTGCGGAACACATAGTGGTTGAGTACAGCTCGCCCAA
CATAGCCAAACCCTTCCACGTGGGCCACCTGCGCTCCACAATCATCGGCA
ATGTTCTGGCCAACCTGCATGAGCATTTGGGCTACCGCACAACACGGTTG
AACTATCTGGGGGATTGGGGCACGCAATTTGGACTACTGGTATTGGGAGT
TCAACTGCTGAATGTAAGCGACAAAGAGATGCAACTATCCCCAATAGAAA
CGCTGTACAAATCCTACGTGGCCGCCAACAAGGCTGCTGAACAAAGACCT
GAAATCGCGCAACAGGCGAGGGACCTCTTCGCCGCCTTGGAAGGAGGAAC
GGATAAATCAATGGCCAAGAAATGGCAGCAATACAGAAACTACACTATAG
AGGATCTATCCAAAGTCTATAACAGATTGGGCGTTCACTTCGATAGCTAC
AAATGGGAATCCCCGTACTCCCAGCAGCAAATTCAGGATGTTCTGGACAA
ACTGCGAAGCGCTG
BO12073.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:36:33
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG10092-PA | 1785 | CG10092-RA | 1..898 | 17..914 | 4440 | 99.7 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 20:57:15
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG10092-RB | 2748 | CG10092-RB | 62..960 | 16..914 | 4465 | 99.8 | Plus |
CG10092-RA | 1934 | CG10092-RA | 62..960 | 16..914 | 4465 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 20:57:11
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 7887337..7888135 | 116..914 | 3965 | 99.7 | Plus |
3R | 32079331 | 3R | 7887208..7887277 | 49..118 | 350 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-10 20:57:13 has no hits.
BO12073.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:25:13 Download gff for
BO12073.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10092-PA | 1..898 | 17..914 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 04:56:23 Download gff for
BO12073.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10092-PA | 1..898 | 17..914 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 04:03:40 Download gff for
BO12073.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10092-RA | 62..960 | 16..914 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:34:32 Download gff for
BO12073.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10092-RA | 62..960 | 16..914 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:34:32 Download gff for
BO12073.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 7887106..7887138 | 16..48 | 100 | -> | Plus |
3R | 7887208..7887277 | 49..118 | 100 | -> | Plus |
3R | 7887340..7888135 | 119..914 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 04:03:40 Download gff for
BO12073.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 3712828..3712860 | 16..48 | 100 | -> | Plus |
arm_3R | 3712930..3712999 | 49..118 | 100 | -> | Plus |
arm_3R | 3713062..3713857 | 119..914 | 99 | | Plus |
BO12073.complete Sequence
1816 bp assembled on 2008-08-14
GenBank Submission: FJ632300
> BO12073.complete
GAAGTTATCACTCGACATGGAACGGCCACACATTGGCTTGTTTACCTATA
AAATCTGTAATGCATTGAAAGAACTAACGGAAAGGATGATTCGCTTACGG
CAAGCAATTTGTGAGCAGCTGCCGCATCTCAAGAATGCCTGCTATGCCCT
GGAGGTGCCTGTCAAGAAACAACAGCTACAGAATAGCCGACGTCCAACTG
TGGAGTGGATTCTGCCCTCTGCGTTTGCGCAACAGGAGGTGGAACTACTG
GACTCATTGAAGAAGCGCAGATTCGAGGCCTATGTGGAAAACGTTCGGAT
TGTACCTAGCGCTGGGCGCAGTGCAGCCAAAATCGAGTTTCAGCTGCAGC
CACAGGTCTTTGTAGAACAGCTCCTCCAAACTAAAGAGATTGCTTTACAT
CCTTCGCCCTTTGCTGCGGAACACATAGTGGTTGAGTACAGCTCGCCCAA
CATAGCCAAACCCTTCCACGTGGGCCACCTGCGCTCCACAATCATCGGCA
ATGTTCTGGCCAACCTGCATGAGCATTTGGGCTACCGCACAACACGGTTG
AACTATCTGGGGGATTGGGGCACGCAATTTGGACTACTGGTATTGGGAGT
TCAACTGCTGAATGTAAGCGACAAAGAGATGCAACTATCCCCAATAGAAA
CGCTGTACAAATCCTACGTGGCCGCCAACAAGGCTGCTGAACAAAGACCT
GAAATCGCGCAACAGGCGAGGGACCTCTTCGCCGCCTTGGAAGGAGGAAC
GGATAAATCAATGGCCAAGAAATGGCAGCAATACAGAAACTACACTATAG
AGGATCTATCCAAAGTCTATAACAGATTGGGCGTTCACTTCGATAGCTAC
GAATGGGAATCCCAGTACTCCCAGCAGCAAATTCAGGATGTTCTGGACAA
ACTGCGAAGCGCTGGACTCCTCCAGCCGGAGCACGATGGTCGTGAGATTG
TCGTGGTGGACGGCCGACGCATTCCTGTGATCAAGAGTAATGGATCCACT
TTGTACCTGGCCAGGGACATAGCTGCCCTGCTGGAGAGACTCTCCAGGTT
CCAGTTCTCACGCTTGCTCTACGTCGTGGACAATGGTCAAGCGGATCATT
TTAATGCCCTTTTTAAAACAACGGCAGCCCTGGATGACCGCCTAAGTCTG
GAACAGCTGCAACATGTGAAATTTGGACGCATTTATGGGATGAGCACTCG
TCAGGGAAAGGCAATCTTTCTAAAAGATGTCCTAGATGAAGCACGAGACA
TAATGCGGGAAAAGCGAAACATAAGTGCCACTACCAGAGAAAATTACAAT
CTGGATGATGAACATGTATGTGATATTTTGGGCGTGTCAGCCGTCCTGGT
CAATGTCCTTAAGCAGCGAAGGCAACGAGATCACGAGTTCAGCTGGCAGC
AGGCACTCCAAGTAAATGGTGACACAGGAATCAAGCTTCAATACACACAC
TGCCGCCTGCACAGTTTGCTGGATAATTTCCGAGATGTAGATCTGGACGA
CATTAAGCCCGACTGGAAGCATTTCTCTACGGAGCCTGCGGATGCTTTGG
ATCTGCTCTACGCACTGGCACGTTTCGATCAAAGCGTTTGGCAATCGAAG
GAACAACTGGAGGCTTGTGTCCTTGTCAACTATCTCTTTGGATTGTGCAA
TGCCACCAGTCAAGCGCTGAAAAGATTGCCTGTGAAACAAGAGTCCAGCC
TAGAGAAGCAACTCCAACGCCTGCTTCTTTTTCACGCTGCCAAAAAAACA
CTGCGACACGGAATGGAGCTCCTTGGCCTGCGTCCACTGAACCAAATGGC
AAGCTTTCTAGACCAT
BO12073.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 01:00:47
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG10092-RB | 1785 | CG10092-PB | 1..1782 | 17..1798 | 8910 | 100 | Plus |
CG10092-RA | 1785 | CG10092-PA | 1..1782 | 17..1798 | 8910 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:00:48
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG10092-RB | 2748 | CG10092-RB | 62..1844 | 16..1798 | 8915 | 100 | Plus |
CG10092-RA | 1934 | CG10092-RA | 62..1844 | 16..1798 | 8915 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 01:00:45
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 7887337..7888501 | 116..1280 | 5825 | 100 | Plus |
3R | 32079331 | 3R | 7888563..7888929 | 1281..1647 | 1835 | 100 | Plus |
3R | 32079331 | 3R | 7889095..7889246 | 1647..1798 | 760 | 100 | Plus |
3R | 32079331 | 3R | 7887208..7887277 | 49..118 | 350 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 01:00:46 has no hits.
BO12073.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:41:52 Download gff for
BO12073.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10092-RA | 23..1805 | 16..1798 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:04:33 Download gff for
BO12073.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10092-RA | 63..1844 | 17..1800 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-04 11:02:13 Download gff for
BO12073.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10092-RA | 24..1805 | 17..1800 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:30:59 Download gff for
BO12073.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10092-RA | 63..1844 | 17..1800 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:30:59 Download gff for
BO12073.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 7887107..7887138 | 17..48 | 100 | -> | Plus |
3R | 7887208..7887277 | 49..118 | 100 | -> | Plus |
3R | 7887340..7888501 | 119..1280 | 100 | -> | Plus |
3R | 7888563..7888929 | 1281..1647 | 100 | -> | Plus |
3R | 7889096..7889246 | 1648..1800 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:04:33 Download gff for
BO12073.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 3712829..3712860 | 17..48 | 100 | -> | Plus |
arm_3R | 3712930..3712999 | 49..118 | 100 | -> | Plus |
arm_3R | 3713062..3714223 | 119..1280 | 100 | -> | Plus |
arm_3R | 3714285..3714651 | 1281..1647 | 100 | -> | Plus |
arm_3R | 3714818..3714968 | 1648..1800 | 98 | | Plus |
BO12073.pep Sequence
Translation from 16 to 1816
> BO12073.pep
MERPHIGLFTYKICNALKELTERMIRLRQAICEQLPHLKNACYALEVPVK
KQQLQNSRRPTVEWILPSAFAQQEVELLDSLKKRRFEAYVENVRIVPSAG
RSAAKIEFQLQPQVFVEQLLQTKEIALHPSPFAAEHIVVEYSSPNIAKPF
HVGHLRSTIIGNVLANLHEHLGYRTTRLNYLGDWGTQFGLLVLGVQLLNV
SDKEMQLSPIETLYKSYVAANKAAEQRPEIAQQARDLFAALEGGTDKSMA
KKWQQYRNYTIEDLSKVYNRLGVHFDSYEWESQYSQQQIQDVLDKLRSAG
LLQPEHDGREIVVVDGRRIPVIKSNGSTLYLARDIAALLERLSRFQFSRL
LYVVDNGQADHFNALFKTTAALDDRLSLEQLQHVKFGRIYGMSTRQGKAI
FLKDVLDEARDIMREKRNISATTRENYNLDDEHVCDILGVSAVLVNVLKQ
RRQRDHEFSWQQALQVNGDTGIKLQYTHCRLHSLLDNFRDVDLDDIKPDW
KHFSTEPADALDLLYALARFDQSVWQSKEQLEACVLVNYLFGLCNATSQA
LKRLPVKQESSLEKQLQRLLLFHAAKKTLRHGMELLGLRPLNQMASFLDH
BO12073.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 02:56:32
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG10092-PB | 594 | CG10092-PB | 1..594 | 1..594 | 3053 | 100 | Plus |
CG10092-PA | 594 | CG10092-PA | 1..594 | 1..594 | 3053 | 100 | Plus |
Aats-arg-PA | 665 | CG9020-PA | 190..665 | 129..594 | 462 | 29.2 | Plus |