Clone BO12073 Report

Search the DGRC for BO12073

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:120
Well:73
Vector:pDNR-Dual
Associated Gene/TranscriptCG10092-RA
Protein status:BO12073.pep: Imported from assembly
Sequenced Size:1816

Clone Sequence Records

BO12073.3prime Sequence

777 bp (765 high quality bases) assembled on 2006-04-18

> BO12073.3prime
ATGGTCTAGAAAGCTTGCCATTTGGTTCAGTGGACGCAGGCCAAGGAGCT
CCATTCCGTGTCGCAGTGTTTTTTTGGCAGCGTGAAAAAGAAGCAGGCGT
TGGAGTTGCTTCTCTAGGCTGGACTCTTGTTTCACAGGCAATCTTTTCAG
CGCTTGACTGGTGGCATTGCACAATCCAAAGAGATAGTTGACAAGGACAC
AAGCCTCCAGTTGTTCCTTCGATTGCCAAACGCTTTGATCGAAACGTGCC
AGTGCGTAGAGCAGATCCAAAGCATCCGCAGGCTCCGTAGAGAAATGCTT
CCAGTCGGGCTTAATGTCGTCCAGATCTACATCTCGGAAATTATCCAGCA
AACTGTGCAGGCGGCAGTGTGTGTATTGAAGCTTGATTCCTGTGTCACCA
TTTACTTGGAGTGCCTGCTGCCAGCTGAACTCGTGATCTCGTTGCCTTCG
CTGCTTAAGGACATTGACCAGGACGGCTGACACGCCCAAAATATCACATA
CATGTTCATCATCCAGATTGTAATTTTCTCTGGTAGTGGCACTTATGTTT
CGCTTTTCCCGCATTATGTCTCGTGCTTCATCTAGGACATCTTTTAGAAA
GATTGCCTTTCCCTGACGAGTGCTCATCCCATAAATGCGTCCAAATTTCA
CATGTTGCAGCTGTTCCAGACTTAGGCGGTCATCCAGGGCTGCCGTTGTT
TTAAAAAGGGCATTAAAAGATCGCTTGACATTGTCCCGACGTAGAGCAAG
CGTGAGACTGGAACTGGAAGTCCTCCA

BO12073.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:36:32
Subject Length Description Subject Range Query Range Score Percent Strand
CG10092-PA 1785 CG10092-RA 1083..1782 718..19 3500 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 12:18:49
Subject Length Description Subject Range Query Range Score Percent Strand
CG10092-RB 2748 CG10092-RB 1078..1844 777..19 3635 99 Minus
CG10092-RA 1934 CG10092-RA 1078..1844 777..19 3635 99 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 12:18:46
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 7888563..7888929 536..170 1835 100 Minus
3R 32079331 3R 7888277..7888501 757..537 925 98.2 Minus
3R 32079331 3R 7889095..7889246 170..19 760 100 Minus
Blast to na_te.dros performed on 2015-02-11 12:18:47 has no hits.

BO12073.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:25:11 Download gff for BO12073.3prime
Subject Subject Range Query Range Percent Splice Strand
CG10092-PA 1017..1785 18..776 98   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 04:56:21 Download gff for BO12073.3prime
Subject Subject Range Query Range Percent Splice Strand
CG10092-PA 1017..1785 18..776 98   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-24 08:46:14 Download gff for BO12073.3prime
Subject Subject Range Query Range Percent Splice Strand
CG10092-RA 1079..1844 19..776 98   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 13:53:26 Download gff for BO12073.3prime
Subject Subject Range Query Range Percent Splice Strand
CG10092-RA 1079..1844 19..776 98   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 13:53:26 Download gff for BO12073.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 7889096..7889246 19..169 100   Minus
3R 7888254..7888501 537..776 96 -> Minus
3R 7888563..7888929 170..536 100 -> Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 08:46:14 Download gff for BO12073.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 3713976..3714223 537..776 96 -> Minus
arm_3R 3714285..3714651 170..536 100 -> Minus
arm_3R 3714818..3714968 19..169 100   Minus

BO12073.5prime Sequence

914 bp (740 high quality bases) assembled on 2006-04-18

> BO12073.5prime
GAAGTTATCACTCGACATGGAACGGCCACACATTGGCTTGTTTACCTATA
AAATCTGTAATGCATTGAAAGAACTAACGGAAAGGATGATTCGCTTACGG
CAAGCAATTTGTGAGCAGCTGCCGCATCTCAAGAATGCCTGCTATGCCCT
GGAGGTGCCTGTCAAGAAACAACAGCTACAGAATAGCCGACGTCCAACTG
TGGAGTGGATTCTGCCCTCTGCGTTTGCGCAACAGGAGGTGGAACTACTG
GACTCATTGAAGAAGCGCAGATTCGAGGCCTATGTGGAAAACGTTCGGAT
TGTACCTAGCGCTGGGCGCAGTGCAGCCAAAATCGAGTTTCAGCTGCAGC
CACAGGTCTTTGTAGAACAGCTCCTCCAAACTAAAGAGATTGCTTTACAT
CCTTCGCCCTTTGCTGCGGAACACATAGTGGTTGAGTACAGCTCGCCCAA
CATAGCCAAACCCTTCCACGTGGGCCACCTGCGCTCCACAATCATCGGCA
ATGTTCTGGCCAACCTGCATGAGCATTTGGGCTACCGCACAACACGGTTG
AACTATCTGGGGGATTGGGGCACGCAATTTGGACTACTGGTATTGGGAGT
TCAACTGCTGAATGTAAGCGACAAAGAGATGCAACTATCCCCAATAGAAA
CGCTGTACAAATCCTACGTGGCCGCCAACAAGGCTGCTGAACAAAGACCT
GAAATCGCGCAACAGGCGAGGGACCTCTTCGCCGCCTTGGAAGGAGGAAC
GGATAAATCAATGGCCAAGAAATGGCAGCAATACAGAAACTACACTATAG
AGGATCTATCCAAAGTCTATAACAGATTGGGCGTTCACTTCGATAGCTAC
AAATGGGAATCCCCGTACTCCCAGCAGCAAATTCAGGATGTTCTGGACAA
ACTGCGAAGCGCTG

BO12073.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:36:33
Subject Length Description Subject Range Query Range Score Percent Strand
CG10092-PA 1785 CG10092-RA 1..898 17..914 4440 99.7 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 20:57:15
Subject Length Description Subject Range Query Range Score Percent Strand
CG10092-RB 2748 CG10092-RB 62..960 16..914 4465 99.8 Plus
CG10092-RA 1934 CG10092-RA 62..960 16..914 4465 99.8 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 20:57:11
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 7887337..7888135 116..914 3965 99.7 Plus
3R 32079331 3R 7887208..7887277 49..118 350 100 Plus
Blast to na_te.dros performed on 2015-02-10 20:57:13 has no hits.

BO12073.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:25:13 Download gff for BO12073.5prime
Subject Subject Range Query Range Percent Splice Strand
CG10092-PA 1..898 17..914 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 04:56:23 Download gff for BO12073.5prime
Subject Subject Range Query Range Percent Splice Strand
CG10092-PA 1..898 17..914 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 04:03:40 Download gff for BO12073.5prime
Subject Subject Range Query Range Percent Splice Strand
CG10092-RA 62..960 16..914 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:34:32 Download gff for BO12073.5prime
Subject Subject Range Query Range Percent Splice Strand
CG10092-RA 62..960 16..914 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:34:32 Download gff for BO12073.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 7887106..7887138 16..48 100 -> Plus
3R 7887208..7887277 49..118 100 -> Plus
3R 7887340..7888135 119..914 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 04:03:40 Download gff for BO12073.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 3712828..3712860 16..48 100 -> Plus
arm_3R 3712930..3712999 49..118 100 -> Plus
arm_3R 3713062..3713857 119..914 99   Plus

BO12073.complete Sequence

1816 bp assembled on 2008-08-14

GenBank Submission: FJ632300

> BO12073.complete
GAAGTTATCACTCGACATGGAACGGCCACACATTGGCTTGTTTACCTATA
AAATCTGTAATGCATTGAAAGAACTAACGGAAAGGATGATTCGCTTACGG
CAAGCAATTTGTGAGCAGCTGCCGCATCTCAAGAATGCCTGCTATGCCCT
GGAGGTGCCTGTCAAGAAACAACAGCTACAGAATAGCCGACGTCCAACTG
TGGAGTGGATTCTGCCCTCTGCGTTTGCGCAACAGGAGGTGGAACTACTG
GACTCATTGAAGAAGCGCAGATTCGAGGCCTATGTGGAAAACGTTCGGAT
TGTACCTAGCGCTGGGCGCAGTGCAGCCAAAATCGAGTTTCAGCTGCAGC
CACAGGTCTTTGTAGAACAGCTCCTCCAAACTAAAGAGATTGCTTTACAT
CCTTCGCCCTTTGCTGCGGAACACATAGTGGTTGAGTACAGCTCGCCCAA
CATAGCCAAACCCTTCCACGTGGGCCACCTGCGCTCCACAATCATCGGCA
ATGTTCTGGCCAACCTGCATGAGCATTTGGGCTACCGCACAACACGGTTG
AACTATCTGGGGGATTGGGGCACGCAATTTGGACTACTGGTATTGGGAGT
TCAACTGCTGAATGTAAGCGACAAAGAGATGCAACTATCCCCAATAGAAA
CGCTGTACAAATCCTACGTGGCCGCCAACAAGGCTGCTGAACAAAGACCT
GAAATCGCGCAACAGGCGAGGGACCTCTTCGCCGCCTTGGAAGGAGGAAC
GGATAAATCAATGGCCAAGAAATGGCAGCAATACAGAAACTACACTATAG
AGGATCTATCCAAAGTCTATAACAGATTGGGCGTTCACTTCGATAGCTAC
GAATGGGAATCCCAGTACTCCCAGCAGCAAATTCAGGATGTTCTGGACAA
ACTGCGAAGCGCTGGACTCCTCCAGCCGGAGCACGATGGTCGTGAGATTG
TCGTGGTGGACGGCCGACGCATTCCTGTGATCAAGAGTAATGGATCCACT
TTGTACCTGGCCAGGGACATAGCTGCCCTGCTGGAGAGACTCTCCAGGTT
CCAGTTCTCACGCTTGCTCTACGTCGTGGACAATGGTCAAGCGGATCATT
TTAATGCCCTTTTTAAAACAACGGCAGCCCTGGATGACCGCCTAAGTCTG
GAACAGCTGCAACATGTGAAATTTGGACGCATTTATGGGATGAGCACTCG
TCAGGGAAAGGCAATCTTTCTAAAAGATGTCCTAGATGAAGCACGAGACA
TAATGCGGGAAAAGCGAAACATAAGTGCCACTACCAGAGAAAATTACAAT
CTGGATGATGAACATGTATGTGATATTTTGGGCGTGTCAGCCGTCCTGGT
CAATGTCCTTAAGCAGCGAAGGCAACGAGATCACGAGTTCAGCTGGCAGC
AGGCACTCCAAGTAAATGGTGACACAGGAATCAAGCTTCAATACACACAC
TGCCGCCTGCACAGTTTGCTGGATAATTTCCGAGATGTAGATCTGGACGA
CATTAAGCCCGACTGGAAGCATTTCTCTACGGAGCCTGCGGATGCTTTGG
ATCTGCTCTACGCACTGGCACGTTTCGATCAAAGCGTTTGGCAATCGAAG
GAACAACTGGAGGCTTGTGTCCTTGTCAACTATCTCTTTGGATTGTGCAA
TGCCACCAGTCAAGCGCTGAAAAGATTGCCTGTGAAACAAGAGTCCAGCC
TAGAGAAGCAACTCCAACGCCTGCTTCTTTTTCACGCTGCCAAAAAAACA
CTGCGACACGGAATGGAGCTCCTTGGCCTGCGTCCACTGAACCAAATGGC
AAGCTTTCTAGACCAT

BO12073.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 01:00:47
Subject Length Description Subject Range Query Range Score Percent Strand
CG10092-RB 1785 CG10092-PB 1..1782 17..1798 8910 100 Plus
CG10092-RA 1785 CG10092-PA 1..1782 17..1798 8910 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:00:48
Subject Length Description Subject Range Query Range Score Percent Strand
CG10092-RB 2748 CG10092-RB 62..1844 16..1798 8915 100 Plus
CG10092-RA 1934 CG10092-RA 62..1844 16..1798 8915 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 01:00:45
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 7887337..7888501 116..1280 5825 100 Plus
3R 32079331 3R 7888563..7888929 1281..1647 1835 100 Plus
3R 32079331 3R 7889095..7889246 1647..1798 760 100 Plus
3R 32079331 3R 7887208..7887277 49..118 350 100 Plus
Blast to na_te.dros performed on 2014-11-28 01:00:46 has no hits.

BO12073.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:41:52 Download gff for BO12073.complete
Subject Subject Range Query Range Percent Splice Strand
CG10092-RA 23..1805 16..1798 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:04:33 Download gff for BO12073.complete
Subject Subject Range Query Range Percent Splice Strand
CG10092-RA 63..1844 17..1800 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-04 11:02:13 Download gff for BO12073.complete
Subject Subject Range Query Range Percent Splice Strand
CG10092-RA 24..1805 17..1800 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:30:59 Download gff for BO12073.complete
Subject Subject Range Query Range Percent Splice Strand
CG10092-RA 63..1844 17..1800 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:30:59 Download gff for BO12073.complete
Subject Subject Range Query Range Percent Splice Strand
3R 7887107..7887138 17..48 100 -> Plus
3R 7887208..7887277 49..118 100 -> Plus
3R 7887340..7888501 119..1280 100 -> Plus
3R 7888563..7888929 1281..1647 100 -> Plus
3R 7889096..7889246 1648..1800 98   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:04:33 Download gff for BO12073.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 3712829..3712860 17..48 100 -> Plus
arm_3R 3712930..3712999 49..118 100 -> Plus
arm_3R 3713062..3714223 119..1280 100 -> Plus
arm_3R 3714285..3714651 1281..1647 100 -> Plus
arm_3R 3714818..3714968 1648..1800 98   Plus

BO12073.pep Sequence

Translation from 16 to 1816

> BO12073.pep
MERPHIGLFTYKICNALKELTERMIRLRQAICEQLPHLKNACYALEVPVK
KQQLQNSRRPTVEWILPSAFAQQEVELLDSLKKRRFEAYVENVRIVPSAG
RSAAKIEFQLQPQVFVEQLLQTKEIALHPSPFAAEHIVVEYSSPNIAKPF
HVGHLRSTIIGNVLANLHEHLGYRTTRLNYLGDWGTQFGLLVLGVQLLNV
SDKEMQLSPIETLYKSYVAANKAAEQRPEIAQQARDLFAALEGGTDKSMA
KKWQQYRNYTIEDLSKVYNRLGVHFDSYEWESQYSQQQIQDVLDKLRSAG
LLQPEHDGREIVVVDGRRIPVIKSNGSTLYLARDIAALLERLSRFQFSRL
LYVVDNGQADHFNALFKTTAALDDRLSLEQLQHVKFGRIYGMSTRQGKAI
FLKDVLDEARDIMREKRNISATTRENYNLDDEHVCDILGVSAVLVNVLKQ
RRQRDHEFSWQQALQVNGDTGIKLQYTHCRLHSLLDNFRDVDLDDIKPDW
KHFSTEPADALDLLYALARFDQSVWQSKEQLEACVLVNYLFGLCNATSQA
LKRLPVKQESSLEKQLQRLLLFHAAKKTLRHGMELLGLRPLNQMASFLDH

BO12073.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 02:56:32
Subject Length Description Subject Range Query Range Score Percent Strand
CG10092-PB 594 CG10092-PB 1..594 1..594 3053 100 Plus
CG10092-PA 594 CG10092-PA 1..594 1..594 3053 100 Plus
Aats-arg-PA 665 CG9020-PA 190..665 129..594 462 29.2 Plus