Clone Sequence Records
BO12074.5prime Sequence
892 bp (829 high quality bases) assembled on 2006-04-18
> BO12074.5prime
GAAGTTATCAGTCGACATGTACGCAGCTGTTAAACCGCTCTCCAAGTATC
TGCAGTTCAAGTCGGTGCACATCTACGATGCTATTTTCACGCTGCACTCC
AAAGTCACAGTGGCCCTGCTTTTGGCCTGCACATTTTTGCTTTCCTCGAA
ACAATATTTCGGCGATCCCATCCAGTGTTTTGGGGACAAGGATATGGACT
ACGTGCACGCCTTTTGTTGGATCTACGGGGCCTATGTGAGCGACAATGTG
ACTGTGACGCCCCTAAGGAATGGAGCTGCACAGTGCCGACCAGATGCGGT
TAGTAAGGTAGTGCCCCCGGAAAATCGTAACTACATAACCTACTATCAGT
GGGTCGTGCTGGTATTGCTGCTCGAGTCGTTTGTGTTTTATATGCCAGCA
TTTCTCTGGAAGATTTGGGAGGGCGGTCGGCTGAAGCATTTGTGCGATGA
TTTCCACAAGATGGCCGTTTGCAAGGACAAGAGCAGGACCCATTTGCGCG
TACTAGTCAACTACTTCTCCAGCGATTACAAAGAGACCCACTTCCGCTAC
TTCGTTAGCTACGTCTTCTGCGAAATACTCAATTTGAGCATCAGTATTCT
AAACTTCCTTCTGTTGGACGTATTTTTCGGAGGTTTTTGGGGCCGCTACC
GTAATGCCTTGCTGTCCCTTTACAATGGCGACTATAACCAGTGGAACATT
ATAACCATGGCAGTCTTCCCCAAGTGTGCCAAGTGCGAGATGTACAAGGG
CGGCCCCAGCGGTTCTTCCAACATATACGACTACCTTTGCCTGCTGCCCC
TGAATATACTGAACGAGAAAATCTTCGCCTTCCTGTGGATATGGTTTATA
CTAGTGGCTATGCTCATTTCCCTCAAGTTTCTGTACCGCCTG
BO12074.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:36:33
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG10125-PA | 1104 | zpg-RA | 1..876 | 17..892 | 4380 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 11:06:16
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
zpg-RB | 1539 | CG10125-RB | 123..999 | 16..892 | 4385 | 100 | Plus |
zpg-RA | 1455 | CG10125-RA | 123..999 | 16..892 | 4385 | 100 | Plus |
Inx6-RA | 1875 | CG17063-RA | 270..430 | 17..177 | 190 | 75.3 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 11:06:11
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 6605275..6605579 | 595..291 | 1525 | 100 | Minus |
3L | 28110227 | 3L | 6604906..6605202 | 892..596 | 1485 | 100 | Minus |
3L | 28110227 | 3L | 6605633..6605910 | 293..16 | 1390 | 100 | Minus |
X | 23542271 | X | 20269340..20269500 | 177..17 | 190 | 74.5 | Minus |
Blast to na_te.dros performed on 2015-02-11 11:06:14 has no hits.
BO12074.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:25:14 Download gff for
BO12074.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
zpg-PA | 1..876 | 17..892 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 04:56:24 Download gff for
BO12074.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10125-PA | 1..876 | 17..892 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-24 16:42:35 Download gff for
BO12074.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
zpg-RA | 123..999 | 16..892 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 12:38:04 Download gff for
BO12074.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
zpg-RA | 123..999 | 16..892 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 12:38:04 Download gff for
BO12074.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 6604906..6605202 | 596..892 | 100 | <- | Minus |
3L | 6605275..6605576 | 294..595 | 100 | <- | Minus |
3L | 6605633..6605910 | 16..293 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 16:42:35 Download gff for
BO12074.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 6598006..6598302 | 596..892 | 100 | <- | Minus |
arm_3L | 6598375..6598676 | 294..595 | 100 | <- | Minus |
arm_3L | 6598733..6599010 | 16..293 | 100 | | Minus |
BO12074.complete Sequence
1135 bp assembled on 2008-01-17
GenBank Submission: FJ632301
> BO12074.complete
GAAGTTATCAGTCGACATGTACGCAGCTGTTAAACCGCTCTCCAAGTATC
TGCAGTTCAAGTCGGTGCACATCTACGATGCTATTTTCACGCTGCACTCC
AAAGTCACAGTGGCCCTGCTTTTGGCCTGCACATTTTTGCTTTCCTCGAA
ACAATATTTCGGCGATCCCATCCAGTGTTTTGGGGACAAGGATATGGACT
ACGTGCACGCCTTTTGTTGGATCTACGGGGCCTATGTGAGCGACAATGTG
ACTGTGACGCCCCTAAGGAATGGAGCTGCACAGTGCCGACCAGATGCGGT
TAGTAAGGTAGTGCCCCCGGAAAATCGTAACTACATAACCTACTATCAGT
GGGTCGTGCTGGTATTGCTGCTCGAGTCGTTTGTGTTTTATATGCCAGCA
TTTCTCTGGAAGATTTGGGAGGGCGGTCGGCTGAAGCATTTGTGCGATGA
TTTCCACAAGATGGCCGTTTGCAAGGACAAGAGCAGGACCCATTTGCGCG
TACTAGTCAACTACTTCTCCAGCGATTACAAAGAGACCCACTTCCGCTAC
TTCGTTAGCTACGTCTTCTGCGAAATACTCAATTTGAGCATCAGTATTCT
AAACTTCCTTCTGTTGGACGTATTTTTCGGAGGTTTTTGGGGCCGCTACC
GTAATGCCTTGCTGTCCCTTTACAATGGCGACTATAACCAGTGGAACATT
ATAACCATGGCAGTCTTCCCCAAGTGTGCCAAGTGCGAGATGTACAAGGG
CGGCCCCAGCGGTTCTTCCAACATATACGACTACCTTTGCCTGCTGCCCC
TGAATATACTGAACGAGAAAATCTTCGCCTTCCTGTGGATATGGTTTATA
CTAGTGGCTATGCTCATTTCCCTCAAGTTTCTGTACCGCCTGGCCACCGT
TTTGTATCCCGGAATGCGTCTTCAGTTGCTTCGTGCCAGGGCACGTTTCA
TGCCCAAGAAGCACTTGCAGGTGGCATTGCGCAATTGCAGTTTTGGCGAC
TGGTTCGTGCTGATGCGCGTGGGCAACAACATCAGCCCCGAGCTATTCCG
TAAGTTGCTGGAGGAGCTGTACGAAGCTCAGTCCTTGATCAAAATACCGC
CAGGAGCGGACAAGATCGCAAGCTTTCTAGACCAT
BO12074.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 23:40:57
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
zpg-RB | 1104 | CG10125-PB | 1..1101 | 17..1117 | 5505 | 100 | Plus |
zpg-RA | 1104 | CG10125-PA | 1..1101 | 17..1117 | 5505 | 100 | Plus |
Inx6-RA | 1446 | CG17063-PA | 1..161 | 17..177 | 190 | 74.5 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 23:40:58
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
zpg-RB | 1539 | CG10125-RB | 123..1224 | 16..1117 | 5510 | 100 | Plus |
zpg-RA | 1455 | CG10125-RA | 123..1224 | 16..1117 | 5510 | 100 | Plus |
Inx6-RA | 1875 | CG17063-RA | 270..430 | 17..177 | 190 | 74.5 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 23:40:55
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 6604681..6605202 | 1117..596 | 2610 | 100 | Minus |
3L | 28110227 | 3L | 6605275..6605579 | 595..291 | 1525 | 100 | Minus |
3L | 28110227 | 3L | 6605633..6605910 | 293..16 | 1390 | 100 | Minus |
X | 23542271 | X | 20269340..20269500 | 177..17 | 190 | 74.5 | Minus |
Blast to na_te.dros performed on 2014-11-27 23:40:56 has no hits.
BO12074.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 13:59:49 Download gff for
BO12074.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
zpg-RA | 1..1104 | 17..1121 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-07-28 15:29:46 Download gff for
BO12074.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
zpg-RA | 121..1221 | 17..1119 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:35:17 Download gff for
BO12074.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
zpg-RA | 124..1224 | 17..1119 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 13:59:49 Download gff for
BO12074.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
zpg-RA | 120..1232 | 16..1130 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:06:01 Download gff for
BO12074.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
zpg-RA | 124..1224 | 17..1119 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:06:01 Download gff for
BO12074.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 6604679..6605202 | 596..1119 | 99 | <- | Minus |
3L | 6605275..6605576 | 294..595 | 100 | <- | Minus |
3L | 6605633..6605909 | 17..293 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:35:17 Download gff for
BO12074.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 6597779..6598302 | 596..1119 | 99 | <- | Minus |
arm_3L | 6598375..6598676 | 294..595 | 100 | <- | Minus |
arm_3L | 6598733..6599009 | 17..293 | 100 | | Minus |
BO12074.pep Sequence
Translation from 16 to 1135
> BO12074.pep
MYAAVKPLSKYLQFKSVHIYDAIFTLHSKVTVALLLACTFLLSSKQYFGD
PIQCFGDKDMDYVHAFCWIYGAYVSDNVTVTPLRNGAAQCRPDAVSKVVP
PENRNYITYYQWVVLVLLLESFVFYMPAFLWKIWEGGRLKHLCDDFHKMA
VCKDKSRTHLRVLVNYFSSDYKETHFRYFVSYVFCEILNLSISILNFLLL
DVFFGGFWGRYRNALLSLYNGDYNQWNIITMAVFPKCAKCEMYKGGPSGS
SNIYDYLCLLPLNILNEKIFAFLWIWFILVAMLISLKFLYRLATVLYPGM
RLQLLRARARFMPKKHLQVALRNCSFGDWFVLMRVGNNISPELFRKLLEE
LYEAQSLIKIPPGADKIASFLDH
BO12074.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 02:26:47
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
zpg-PB | 367 | CG10125-PB | 1..367 | 1..367 | 1969 | 100 | Plus |
zpg-PA | 367 | CG10125-PA | 1..367 | 1..367 | 1969 | 100 | Plus |
Inx5-PB | 419 | CG7537-PB | 1..408 | 1..356 | 951 | 43.4 | Plus |
Inx6-PA | 481 | CG17063-PA | 1..386 | 1..352 | 948 | 47.4 | Plus |
Inx2-PD | 367 | CG4590-PD | 4..354 | 1..356 | 606 | 35.8 | Plus |