Clone BO12074 Report

Search the DGRC for BO12074

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:120
Well:74
Vector:pDNR-Dual
Associated Gene/Transcriptzpg-RA
Protein status:BO12074.pep:
Sequenced Size:1135

Clone Sequence Records

BO12074.5prime Sequence

892 bp (829 high quality bases) assembled on 2006-04-18

> BO12074.5prime
GAAGTTATCAGTCGACATGTACGCAGCTGTTAAACCGCTCTCCAAGTATC
TGCAGTTCAAGTCGGTGCACATCTACGATGCTATTTTCACGCTGCACTCC
AAAGTCACAGTGGCCCTGCTTTTGGCCTGCACATTTTTGCTTTCCTCGAA
ACAATATTTCGGCGATCCCATCCAGTGTTTTGGGGACAAGGATATGGACT
ACGTGCACGCCTTTTGTTGGATCTACGGGGCCTATGTGAGCGACAATGTG
ACTGTGACGCCCCTAAGGAATGGAGCTGCACAGTGCCGACCAGATGCGGT
TAGTAAGGTAGTGCCCCCGGAAAATCGTAACTACATAACCTACTATCAGT
GGGTCGTGCTGGTATTGCTGCTCGAGTCGTTTGTGTTTTATATGCCAGCA
TTTCTCTGGAAGATTTGGGAGGGCGGTCGGCTGAAGCATTTGTGCGATGA
TTTCCACAAGATGGCCGTTTGCAAGGACAAGAGCAGGACCCATTTGCGCG
TACTAGTCAACTACTTCTCCAGCGATTACAAAGAGACCCACTTCCGCTAC
TTCGTTAGCTACGTCTTCTGCGAAATACTCAATTTGAGCATCAGTATTCT
AAACTTCCTTCTGTTGGACGTATTTTTCGGAGGTTTTTGGGGCCGCTACC
GTAATGCCTTGCTGTCCCTTTACAATGGCGACTATAACCAGTGGAACATT
ATAACCATGGCAGTCTTCCCCAAGTGTGCCAAGTGCGAGATGTACAAGGG
CGGCCCCAGCGGTTCTTCCAACATATACGACTACCTTTGCCTGCTGCCCC
TGAATATACTGAACGAGAAAATCTTCGCCTTCCTGTGGATATGGTTTATA
CTAGTGGCTATGCTCATTTCCCTCAAGTTTCTGTACCGCCTG

BO12074.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:36:33
Subject Length Description Subject Range Query Range Score Percent Strand
CG10125-PA 1104 zpg-RA 1..876 17..892 4380 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 11:06:16
Subject Length Description Subject Range Query Range Score Percent Strand
zpg-RB 1539 CG10125-RB 123..999 16..892 4385 100 Plus
zpg-RA 1455 CG10125-RA 123..999 16..892 4385 100 Plus
Inx6-RA 1875 CG17063-RA 270..430 17..177 190 75.3 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 11:06:11
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 6605275..6605579 595..291 1525 100 Minus
3L 28110227 3L 6604906..6605202 892..596 1485 100 Minus
3L 28110227 3L 6605633..6605910 293..16 1390 100 Minus
X 23542271 X 20269340..20269500 177..17 190 74.5 Minus
Blast to na_te.dros performed on 2015-02-11 11:06:14 has no hits.

BO12074.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:25:14 Download gff for BO12074.5prime
Subject Subject Range Query Range Percent Splice Strand
zpg-PA 1..876 17..892 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 04:56:24 Download gff for BO12074.5prime
Subject Subject Range Query Range Percent Splice Strand
CG10125-PA 1..876 17..892 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-24 16:42:35 Download gff for BO12074.5prime
Subject Subject Range Query Range Percent Splice Strand
zpg-RA 123..999 16..892 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 12:38:04 Download gff for BO12074.5prime
Subject Subject Range Query Range Percent Splice Strand
zpg-RA 123..999 16..892 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 12:38:04 Download gff for BO12074.5prime
Subject Subject Range Query Range Percent Splice Strand
3L 6604906..6605202 596..892 100 <- Minus
3L 6605275..6605576 294..595 100 <- Minus
3L 6605633..6605910 16..293 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 16:42:35 Download gff for BO12074.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 6598006..6598302 596..892 100 <- Minus
arm_3L 6598375..6598676 294..595 100 <- Minus
arm_3L 6598733..6599010 16..293 100   Minus

BO12074.complete Sequence

1135 bp assembled on 2008-01-17

GenBank Submission: FJ632301

> BO12074.complete
GAAGTTATCAGTCGACATGTACGCAGCTGTTAAACCGCTCTCCAAGTATC
TGCAGTTCAAGTCGGTGCACATCTACGATGCTATTTTCACGCTGCACTCC
AAAGTCACAGTGGCCCTGCTTTTGGCCTGCACATTTTTGCTTTCCTCGAA
ACAATATTTCGGCGATCCCATCCAGTGTTTTGGGGACAAGGATATGGACT
ACGTGCACGCCTTTTGTTGGATCTACGGGGCCTATGTGAGCGACAATGTG
ACTGTGACGCCCCTAAGGAATGGAGCTGCACAGTGCCGACCAGATGCGGT
TAGTAAGGTAGTGCCCCCGGAAAATCGTAACTACATAACCTACTATCAGT
GGGTCGTGCTGGTATTGCTGCTCGAGTCGTTTGTGTTTTATATGCCAGCA
TTTCTCTGGAAGATTTGGGAGGGCGGTCGGCTGAAGCATTTGTGCGATGA
TTTCCACAAGATGGCCGTTTGCAAGGACAAGAGCAGGACCCATTTGCGCG
TACTAGTCAACTACTTCTCCAGCGATTACAAAGAGACCCACTTCCGCTAC
TTCGTTAGCTACGTCTTCTGCGAAATACTCAATTTGAGCATCAGTATTCT
AAACTTCCTTCTGTTGGACGTATTTTTCGGAGGTTTTTGGGGCCGCTACC
GTAATGCCTTGCTGTCCCTTTACAATGGCGACTATAACCAGTGGAACATT
ATAACCATGGCAGTCTTCCCCAAGTGTGCCAAGTGCGAGATGTACAAGGG
CGGCCCCAGCGGTTCTTCCAACATATACGACTACCTTTGCCTGCTGCCCC
TGAATATACTGAACGAGAAAATCTTCGCCTTCCTGTGGATATGGTTTATA
CTAGTGGCTATGCTCATTTCCCTCAAGTTTCTGTACCGCCTGGCCACCGT
TTTGTATCCCGGAATGCGTCTTCAGTTGCTTCGTGCCAGGGCACGTTTCA
TGCCCAAGAAGCACTTGCAGGTGGCATTGCGCAATTGCAGTTTTGGCGAC
TGGTTCGTGCTGATGCGCGTGGGCAACAACATCAGCCCCGAGCTATTCCG
TAAGTTGCTGGAGGAGCTGTACGAAGCTCAGTCCTTGATCAAAATACCGC
CAGGAGCGGACAAGATCGCAAGCTTTCTAGACCAT

BO12074.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 23:40:57
Subject Length Description Subject Range Query Range Score Percent Strand
zpg-RB 1104 CG10125-PB 1..1101 17..1117 5505 100 Plus
zpg-RA 1104 CG10125-PA 1..1101 17..1117 5505 100 Plus
Inx6-RA 1446 CG17063-PA 1..161 17..177 190 74.5 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 23:40:58
Subject Length Description Subject Range Query Range Score Percent Strand
zpg-RB 1539 CG10125-RB 123..1224 16..1117 5510 100 Plus
zpg-RA 1455 CG10125-RA 123..1224 16..1117 5510 100 Plus
Inx6-RA 1875 CG17063-RA 270..430 17..177 190 74.5 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 23:40:55
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 6604681..6605202 1117..596 2610 100 Minus
3L 28110227 3L 6605275..6605579 595..291 1525 100 Minus
3L 28110227 3L 6605633..6605910 293..16 1390 100 Minus
X 23542271 X 20269340..20269500 177..17 190 74.5 Minus
Blast to na_te.dros performed on 2014-11-27 23:40:56 has no hits.

BO12074.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 13:59:49 Download gff for BO12074.complete
Subject Subject Range Query Range Percent Splice Strand
zpg-RA 1..1104 17..1121 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-07-28 15:29:46 Download gff for BO12074.complete
Subject Subject Range Query Range Percent Splice Strand
zpg-RA 121..1221 17..1119 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:35:17 Download gff for BO12074.complete
Subject Subject Range Query Range Percent Splice Strand
zpg-RA 124..1224 17..1119 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 13:59:49 Download gff for BO12074.complete
Subject Subject Range Query Range Percent Splice Strand
zpg-RA 120..1232 16..1130 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:06:01 Download gff for BO12074.complete
Subject Subject Range Query Range Percent Splice Strand
zpg-RA 124..1224 17..1119 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:06:01 Download gff for BO12074.complete
Subject Subject Range Query Range Percent Splice Strand
3L 6604679..6605202 596..1119 99 <- Minus
3L 6605275..6605576 294..595 100 <- Minus
3L 6605633..6605909 17..293 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:35:17 Download gff for BO12074.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 6597779..6598302 596..1119 99 <- Minus
arm_3L 6598375..6598676 294..595 100 <- Minus
arm_3L 6598733..6599009 17..293 100   Minus

BO12074.pep Sequence

Translation from 16 to 1135

> BO12074.pep
MYAAVKPLSKYLQFKSVHIYDAIFTLHSKVTVALLLACTFLLSSKQYFGD
PIQCFGDKDMDYVHAFCWIYGAYVSDNVTVTPLRNGAAQCRPDAVSKVVP
PENRNYITYYQWVVLVLLLESFVFYMPAFLWKIWEGGRLKHLCDDFHKMA
VCKDKSRTHLRVLVNYFSSDYKETHFRYFVSYVFCEILNLSISILNFLLL
DVFFGGFWGRYRNALLSLYNGDYNQWNIITMAVFPKCAKCEMYKGGPSGS
SNIYDYLCLLPLNILNEKIFAFLWIWFILVAMLISLKFLYRLATVLYPGM
RLQLLRARARFMPKKHLQVALRNCSFGDWFVLMRVGNNISPELFRKLLEE
LYEAQSLIKIPPGADKIASFLDH

BO12074.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 02:26:47
Subject Length Description Subject Range Query Range Score Percent Strand
zpg-PB 367 CG10125-PB 1..367 1..367 1969 100 Plus
zpg-PA 367 CG10125-PA 1..367 1..367 1969 100 Plus
Inx5-PB 419 CG7537-PB 1..408 1..356 951 43.4 Plus
Inx6-PA 481 CG17063-PA 1..386 1..352 948 47.4 Plus
Inx2-PD 367 CG4590-PD 4..354 1..356 606 35.8 Plus