Clone Sequence Records
BO12077.3prime Sequence
798 bp (784 high quality bases) assembled on 2006-04-20
> BO12077.3prime
ATGGTCTAGAAAGCTTGCGTCATCTTCATCACTAAGCTCATCCTCCTCCT
TTCTTCTGGACTTTTGCTCCAGTTCCTTGGCGTAGAGATCCTTGAAGGCT
TCGTATTCCGGCAGGGTGACGTGGCAAATCTTTGTGGCGAAACTCTTCTC
GGAAGTGTCTGTAATCTGATAGAGTTTGGGGTTCGTAGTCGGCTCATTTG
GATCGGCTTTCGGAGGTCGTGGCTTAAAGAGGCCCAAACGAAGCAGGAAC
TGGTGGCGACAACGCAGCTCCTCGAATGACAAGGTAAGGGCTGCCGATTT
AACCAACTCCGGCACTTCTATGCGCATCACGTCTGTGATGAAGTTCAGTT
TCTCCTCAATAGATACCTCGGATTGTGCTATCAAATCCGGACTGTTCATC
AAACACTTCCACACATTTTTGCTGGTGGAGACGCGACTTTGAAGGAAGCC
GATGTGGGAAAGTAACTGGTGGGAGTCGCTAACGTCCAGTAACTCGGGGT
ACTTCGTAAGGAGCAGGTGCAGTAGATTCTCGCCGAATTGACAGGCCCTC
CAGATTTCCAGGCAGCTTATTATTTTGTCCGGCGTTCTTTTCAAAATCGC
GGGGTTACCGGTAACTATTCTAAGGAAATTCACGGTTTCCAAGCCGTGGT
TTTGAAAAGTTTGATGGGCCCTTCGCCAGATTTCAGGTGAGAATACAGCT
AACGTGGGTTCTATTTTGATGGCTTCATCGATGTGAATTTGCTCAAGCTG
CAATATCTTGAGCGTTGCCAAGTGCCTTATGTGATGTAAGTTTGACTG
BO12077.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:36:38
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG15390-PA | 828 | CG15390-RA | 46..825 | 798..19 | 3850 | 99.7 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 10:35:06
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG15390-RA | 929 | CG15390-RA | 89..868 | 798..19 | 3870 | 99.7 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 10:35:01
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 2374866..2375636 | 789..19 | 3825 | 99.7 | Minus |
Blast to na_te.dros performed on 2015-02-11 10:35:03 has no hits.
BO12077.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:25:19 Download gff for
BO12077.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG15390-PA | 46..828 | 15..798 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 04:56:33 Download gff for
BO12077.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG15390-PA | 46..828 | 15..798 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-24 05:06:15 Download gff for
BO12077.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG15390-RA | 89..875 | 11..798 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 12:14:02 Download gff for
BO12077.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG15390-RA | 89..875 | 11..798 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 12:14:02 Download gff for
BO12077.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 2374861..2375643 | 11..795 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 05:06:15 Download gff for
BO12077.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 2374861..2375643 | 11..795 | 98 | | Minus |
BO12077.5prime Sequence
801 bp (771 high quality bases) assembled on 2006-04-18
> BO12077.5prime
GAAGTTATCAGTCGACATGTTGCGGAAACTATTATTTAACACACAAGCTG
TATTAAAACAACAGTCAAACTTACATCACATAAGGCACTTGGCAACGCCC
AAGATATTGCAGCTTGAGCAAATTCACATCGATGAAGCCATCAAAATAGA
ACCCACGTTAGCTGTATTCTCACCTGAAATCTGGCGAAGGGCCCATCAAA
CTTTTCAAAACCACGGCTTGGAAACCGTGAATTTCCTTAGAATAGTTACC
GGTAACCCCGCGATTTTGAAAAGAACGCCGGACAAAATAATAAGCTGCCT
GGAAATCTGGAGGGCCTGTCAATTCGGCGAGAATCTACTGCACCTGCTCC
TTACGAAGTACCCCGAGTTACTGGACGTTAGCGACTCCCACCAGTTACTT
TCCCACATCGGCTTCCTTCAAAGTCGCGTCTCCACCAGCAAAAATGTGTG
GAAGTGTTTGATGAACAGTCCGGATTTGATAGCACAATCCGAGGTATCTA
TTGAGGAGAAACTGAACTTCATCACAGACGTGATGCGCATAGAAGTGCCG
GAGTTGGTTAAATCGGCAGCCCTTACCTTGTCATTCGAGGAGCTGCGTTG
TCGCCACCAGTTCCTGCTTCGTTTGGGCCTCTTTAAGCCACGACCTCCGA
AAGCCGATCCAAATGAGCCGACTACGAACCCCAAACTCTATCAGATTACA
GACACTTCCGAGAAGAGTTTCGCCACAAAGATTTGCCACGTCACCCTGCC
GGAATACGAAGCCTTCAAGGATCTCTACGCCAAGGAACTGGAGCAAAAGT
C
BO12077.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:36:38
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG15390-PA | 828 | CG15390-RA | 1..785 | 17..801 | 3900 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 22:41:40
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG15390-RA | 929 | CG15390-RA | 44..828 | 17..801 | 3910 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 22:41:35
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 2374866..2375596 | 71..801 | 3640 | 99.9 | Plus |
| 2L | 23513712 | 2L | 2374756..2374809 | 17..70 | 270 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-10 22:41:37 has no hits.
BO12077.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:25:20 Download gff for
BO12077.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG15390-PA | 1..785 | 17..801 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 04:56:34 Download gff for
BO12077.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG15390-PA | 1..785 | 17..801 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-22 05:42:29 Download gff for
BO12077.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG15390-RA | 44..828 | 17..801 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 00:13:42 Download gff for
BO12077.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG15390-RA | 44..828 | 17..801 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 00:13:42 Download gff for
BO12077.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 2374756..2374809 | 17..70 | 100 | -> | Plus |
| 2L | 2374866..2375596 | 71..801 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-22 05:42:29 Download gff for
BO12077.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 2374756..2374809 | 17..70 | 100 | -> | Plus |
| arm_2L | 2374866..2375596 | 71..801 | 99 | | Plus |
BO12077.complete Sequence
859 bp assembled on 2006-10-11
GenBank Submission: FJ632303
> BO12077.complete
GAAGTTATCAGTCGACATGTTGCGGAAACTATTATTTAACACACAAGCTG
TATTAAAACAACAGTCAAACTTACATCACATAAGGCACTTGGCAACGCCC
AAGATATTGCAGCTTGAGCAAATTCACATCGATGAAGCCATCAAAATAGA
ACCCACGTTAGCTGTATTCTCACCTGAAATCTGGCGAAGGGCCCATCAAA
CTTTTCAAAACCACGGCTTGGAAACCGTGAATTTCCTTAGAATAGTTACC
GGTAACCCCGCGATTTTGAAAAGAACGCCGGACAAAATAATAAGCTGCCT
GGAAATCTGGAGGGCCTGTCAATTCGGCGAGAATCTACTGCACCTGCTCC
TTACGAAGTACCCCGAGTTACTGGACGTTAGCGACTCCCACCAGTTACTT
TCCCACATCGGCTTCCTTCAAAGTCGCGTCTCCACCAGCAAAAATGTGTG
GAAGTGTTTGATGAACAGTCCGGATTTGATAGCACAATCCGAGGTATCTA
TTGAGGAGAAACTGAACTTCATCACAGACGTGATGCGCATAGAAGTGCCG
GAGTTGGTTAAATCGGCAGCCCTTACCTTGTCATTCGAGGAGCTGCGTTG
TCGCCACCAGTTCCTGCTTCGTTTGGGCCTCTTTAAGCCACGACCTCCGA
AAGCCGATCCAAATGAGCCGACTACGAACCCCAAACTCTATCAGATTACA
GACACTTCCGAGAAGAGTTTCGCCACAAAGATTTGCCACGTCACCCTGCC
GGAATACGAAGCCTTCAAGGATCTCTACGCCAAGGAACTGGAGCAAAAGT
CCAGAAGAAAGGAGGAGGATGAGCTTAGTGATGAAGATGACGCAAGCTTT
CTAGACCAT
BO12077.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 10:02:51
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG15390-RA | 828 | CG15390-PA | 1..825 | 17..841 | 4110 | 99.9 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 10:02:52
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG15390-RA | 929 | CG15390-RA | 44..868 | 17..841 | 4110 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 10:02:49
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 2374866..2375636 | 71..841 | 3840 | 99.9 | Plus |
| 2L | 23513712 | 2L | 2374756..2374809 | 17..70 | 270 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 10:02:50 has no hits.
BO12077.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 13:45:06 Download gff for
BO12077.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG15390-RA | 1..828 | 17..845 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:04:02 Download gff for
BO12077.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG15390-RA | 68..899 | 17..849 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:35:21 Download gff for
BO12077.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG15390-RA | 49..868 | 22..843 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 13:45:06 Download gff for
BO12077.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG15390-RA | 68..899 | 17..849 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:11:34 Download gff for
BO12077.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG15390-RA | 49..868 | 22..843 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 11:11:34 Download gff for
BO12077.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 2374761..2374809 | 22..70 | 100 | -> | Plus |
| 2L | 2374866..2375636 | 71..843 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:35:21 Download gff for
BO12077.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 2374761..2374809 | 22..70 | 100 | -> | Plus |
| arm_2L | 2374866..2375636 | 71..843 | 99 | | Plus |
BO12077.pep Sequence
Translation from 16 to 859
> BO12077.pep
MLRKLLFNTQAVLKQQSNLHHIRHLATPKILQLEQIHIDEAIKIEPTLAV
FSPEIWRRAHQTFQNHGLETVNFLRIVTGNPAILKRTPDKIISCLEIWRA
CQFGENLLHLLLTKYPELLDVSDSHQLLSHIGFLQSRVSTSKNVWKCLMN
SPDLIAQSEVSIEEKLNFITDVMRIEVPELVKSAALTLSFEELRCRHQFL
LRLGLFKPRPPKADPNEPTTNPKLYQITDTSEKSFATKICHVTLPEYEAF
KDLYAKELEQKSRRKEEDELSDEDDASFLDH
BO12077.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 23:35:45
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG15390-PA | 275 | CG15390-PA | 1..275 | 1..275 | 1423 | 100 | Plus |
