Clone Sequence Records
BO12082.3prime Sequence
623 bp (622 high quality bases) assembled on 2006-04-20
> BO12082.3prime
ATGGTCTAGAAAGCTTGCGACGGAGGAGAAGTAGTCGCAGCTGCCGCACA
TGTCGTATAGTTGTCCCGAAGCGGGTTCGATGAAAAATCGCAGGGCCTGA
GTGCACTGAAGTTCATGGCTGGCGATTTGTTGTTGCAGCAGTATCTGCAG
CTGTTCCATGTTCGCAGAGTGCTCGAAGCGGATGCCACACTCGCAGATGA
AGGCACCTTTGTGATGGCGTAGGTTTTTAATCTGACAAACTGGGCATAAA
ACCTCCTTTTGCTGCTCATCGGGCTCTGCGTATAGCGTTTCCAGATTCTT
TTCGCCCAGGGCATACCACTCGTTGACATCGGATAGTAGCTCCTCCAGAA
TCAGCTCCTCAAGCTCCACATCCTTCTCTAGCTCACTGAGTTCCAGGCGC
AGGATTTCCCTGAGTTCGGACAATTGGATTTCTCGTTGGGCATCCGTGCA
TCTATTGCGCGTTTCTATGATGCGCTTGCGGTATTTCTCTCGCAGCATTT
CGCGAAGTCTTGGCATTTGGTTGCCCATCCGCTGTCTTTTGGCCACTTCT
TGAGCATGCCGCTTTTGCTCCACGGAGGTGCGATAAACCGGGCTTTGAGT
GGAGTTCATGTCGACTGATAACT
BO12082.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:36:45
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG18145-PA | 594 | Ripalpha-RA | 1..591 | 609..19 | 2955 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-02 17:47:52
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Ripalpha-RA | 1259 | CG18145-RA | 231..825 | 613..19 | 2960 | 99.8 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-02 17:47:45
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 10199835..10200237 | 19..421 | 2015 | 100 | Plus |
2L | 23513712 | 2L | 10200416..10200542 | 487..613 | 620 | 99.2 | Plus |
2L | 23513712 | 2L | 10200291..10200358 | 421..488 | 340 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-02 17:47:48 has no hits.
BO12082.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:25:28 Download gff for
BO12082.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG18145-PA | 1..594 | 18..609 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 04:56:45 Download gff for
BO12082.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG18145-PA | 1..594 | 18..609 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-08 17:27:47 Download gff for
BO12082.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Ripalpha-RA | 225..825 | 19..619 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-02 20:48:30 Download gff for
BO12082.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Ripalpha-RA | 225..825 | 19..619 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-02 20:48:30 Download gff for
BO12082.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 10199835..10200236 | 19..420 | 100 | <- | Plus |
2L | 10200291..10200356 | 421..486 | 100 | <- | Plus |
2L | 10200416..10200548 | 487..619 | 96 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-08 17:27:47 Download gff for
BO12082.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 10199835..10200236 | 19..420 | 100 | <- | Plus |
arm_2L | 10200291..10200356 | 421..486 | 100 | <- | Plus |
arm_2L | 10200416..10200548 | 487..619 | 96 | | Plus |
BO12082.5prime Sequence
623 bp (622 high quality bases) assembled on 2006-04-18
> BO12082.5prime
GAAGTTATCAGTCGACATGAACTCCACTCAAAGCCCGGTTTATCGCACCT
CCGTGGAGCAAAAGCGGCATGCTCAAGAAGTGGCCAAAAGACAGCGGATG
GGCAACCAAATGCCAAGACTTCGCGAAATGCTGCGAGAGAAATACCGCAA
GCGCATCATAGAAACGCGCAATAGATGCACGGATGCCCAACGAGAAATCC
AATTGTCCGAACTCAGGGAAATCCTGCGCCTGGAACTCAGTGAGCTAGAG
AAGGATGTGGAGCTTGAGGAGCTGATTCTGGAGGAGCTACTATCCGATGT
CAACGAGTGGTATGCCCTGGGCGAAAAGAATCTGGAAACGCTATACGCAG
AGCCCGATGAGCAGCAAAAGGAGGTTTTATGCCCAGTTTGTCAGATTAAA
AACCTACGCCATCACAAAGGTGCCTTCATCTGCGAGTGTGGCATCCGCTT
CGAGCACTCTGCGAACATGGAACAGCTGCAGATACTGCTGCAACAACAAA
TCGCCAGCCATGAACTTCAGTGCACTCAGGCCCTGCGATTTTTCATCGAA
CCCGCTTCGGGACAACTATACGACATGTGCGGCAGCTGCGACTACTTCTC
CTCCGTCGCAAGCTTTCTAGACC
BO12082.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:36:46
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG18145-PA | 594 | Ripalpha-RA | 1..591 | 17..607 | 2955 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 21:00:23
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Ripalpha-RA | 1259 | CG18145-RA | 231..825 | 13..607 | 2960 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 21:00:19
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 10199835..10200237 | 607..205 | 2015 | 100 | Minus |
2L | 23513712 | 2L | 10200416..10200542 | 139..13 | 620 | 99.2 | Minus |
2L | 23513712 | 2L | 10200291..10200358 | 205..138 | 340 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-10 21:00:21 has no hits.
BO12082.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:25:29 Download gff for
BO12082.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG18145-PA | 1..594 | 17..608 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 04:56:47 Download gff for
BO12082.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG18145-PA | 1..594 | 17..608 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 04:04:24 Download gff for
BO12082.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Ripalpha-RA | 225..825 | 7..607 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:41:10 Download gff for
BO12082.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Ripalpha-RA | 225..825 | 7..607 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:41:10 Download gff for
BO12082.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 10200416..10200548 | 7..139 | 96 | | Minus |
2L | 10199835..10200236 | 206..607 | 100 | <- | Minus |
2L | 10200291..10200356 | 140..205 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 04:04:24 Download gff for
BO12082.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 10199835..10200236 | 206..607 | 100 | <- | Minus |
arm_2L | 10200291..10200356 | 140..205 | 100 | <- | Minus |
arm_2L | 10200416..10200548 | 7..139 | 96 | | Minus |
BO12082.complete Sequence
625 bp assembled on 2006-10-11
GenBank Submission: FJ632304
> BO12082.complete
GAAGTTATCAGTCGACATGAACTCCACTCAAAGCCCGGTTTATCGCACCT
CCGTGGAGCAAAAGCGGCATGCTCAAGAAGTGGCCAAAAGACAGCGGATG
GGCAACCAAATGCCAAGACTTCGCGAAATGCTGCGAGAGAAATACCGCAA
GCGCATCATAGAAACGCGCAATAGATGCACGGATGCCCAACGAGAAATCC
AATTGTCCGAACTCAGGGAAATCCTGCGCCTGGAACTCAGTGAGCTAGAG
AAGGATGTGGAGCTTGAGGAGCTGATTCTGGAGGAGCTACTATCCGATGT
CAACGAGTGGTATGCCCTGGGCGAAAAGAATCTGGAAACGCTATACGCAG
AGCCCGATGAGCAGCAAAAGGAGGTTTTATGCCCAGTTTGTCAGATTAAA
AACCTACGCCATCACAAAGGTGCCTTCATCTGCGAGTGTGGCATCCGCTT
CGAGCACTCTGCGAACATGGAACAGCTGCAGATACTGCTGCAACAACAAA
TCGCCAGCCATGAACTTCAGTGCACTCAGGCCCTGCGATTTTTCATCGAA
CCCGCTTCGGGACAACTATACGACATGTGCGGCAGCTGCGACTACTTCTC
CTCCGTCGCAAGCTTTCTAGACCAT
BO12082.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 14:49:54
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Ripalpha-RA | 594 | CG18145-PA | 1..591 | 17..607 | 2955 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:49:56
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Ripalpha-RA | 1259 | CG18145-RA | 231..825 | 13..607 | 2960 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 14:49:52
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 10199835..10200237 | 607..205 | 2015 | 100 | Minus |
2L | 23513712 | 2L | 10200416..10200542 | 139..13 | 620 | 99.2 | Minus |
2L | 23513712 | 2L | 10200291..10200358 | 205..138 | 340 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 14:49:53 has no hits.
BO12082.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 13:39:57 Download gff for
BO12082.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Ripalpha-RA | 1..594 | 17..608 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 02:00:27 Download gff for
BO12082.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Ripalpha-RA | 223..823 | 7..607 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:45:45 Download gff for
BO12082.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Ripalpha-RA | 235..825 | 17..609 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 13:39:57 Download gff for
BO12082.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Ripalpha-RA | 223..823 | 7..607 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:53:42 Download gff for
BO12082.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Ripalpha-RA | 235..825 | 17..609 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 15:53:42 Download gff for
BO12082.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 10199833..10200236 | 206..609 | 99 | <- | Minus |
2L | 10200291..10200356 | 140..205 | 100 | <- | Minus |
2L | 10200416..10200538 | 17..139 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:45:45 Download gff for
BO12082.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 10200291..10200356 | 140..205 | 100 | <- | Minus |
arm_2L | 10200416..10200538 | 17..139 | 100 | | Minus |
arm_2L | 10199833..10200236 | 206..609 | 99 | <- | Minus |
BO12082.pep Sequence
Translation from 16 to 625
> BO12082.pep
MNSTQSPVYRTSVEQKRHAQEVAKRQRMGNQMPRLREMLREKYRKRIIET
RNRCTDAQREIQLSELREILRLELSELEKDVELEELILEELLSDVNEWYA
LGEKNLETLYAEPDEQQKEVLCPVCQIKNLRHHKGAFICECGIRFEHSAN
MEQLQILLQQQIASHELQCTQALRFFIEPASGQLYDMCGSCDYFSSVASF
LDH
BO12082.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:53:09
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Ripalpha-PA | 197 | CG18145-PA | 1..197 | 1..197 | 1019 | 100 | Plus |