Clone BO12082 Report

Search the DGRC for BO12082

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:120
Well:82
Vector:pDNR-Dual
Associated Gene/TranscriptRipalpha-RA
Protein status:BO12082.pep: validated full length
Sequenced Size:625

Clone Sequence Records

BO12082.3prime Sequence

623 bp (622 high quality bases) assembled on 2006-04-20

> BO12082.3prime
ATGGTCTAGAAAGCTTGCGACGGAGGAGAAGTAGTCGCAGCTGCCGCACA
TGTCGTATAGTTGTCCCGAAGCGGGTTCGATGAAAAATCGCAGGGCCTGA
GTGCACTGAAGTTCATGGCTGGCGATTTGTTGTTGCAGCAGTATCTGCAG
CTGTTCCATGTTCGCAGAGTGCTCGAAGCGGATGCCACACTCGCAGATGA
AGGCACCTTTGTGATGGCGTAGGTTTTTAATCTGACAAACTGGGCATAAA
ACCTCCTTTTGCTGCTCATCGGGCTCTGCGTATAGCGTTTCCAGATTCTT
TTCGCCCAGGGCATACCACTCGTTGACATCGGATAGTAGCTCCTCCAGAA
TCAGCTCCTCAAGCTCCACATCCTTCTCTAGCTCACTGAGTTCCAGGCGC
AGGATTTCCCTGAGTTCGGACAATTGGATTTCTCGTTGGGCATCCGTGCA
TCTATTGCGCGTTTCTATGATGCGCTTGCGGTATTTCTCTCGCAGCATTT
CGCGAAGTCTTGGCATTTGGTTGCCCATCCGCTGTCTTTTGGCCACTTCT
TGAGCATGCCGCTTTTGCTCCACGGAGGTGCGATAAACCGGGCTTTGAGT
GGAGTTCATGTCGACTGATAACT

BO12082.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:36:45
Subject Length Description Subject Range Query Range Score Percent Strand
CG18145-PA 594 Ripalpha-RA 1..591 609..19 2955 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-02 17:47:52
Subject Length Description Subject Range Query Range Score Percent Strand
Ripalpha-RA 1259 CG18145-RA 231..825 613..19 2960 99.8 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-02 17:47:45
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 10199835..10200237 19..421 2015 100 Plus
2L 23513712 2L 10200416..10200542 487..613 620 99.2 Plus
2L 23513712 2L 10200291..10200358 421..488 340 100 Plus
Blast to na_te.dros performed on 2015-02-02 17:47:48 has no hits.

BO12082.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:25:28 Download gff for BO12082.3prime
Subject Subject Range Query Range Percent Splice Strand
CG18145-PA 1..594 18..609 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 04:56:45 Download gff for BO12082.3prime
Subject Subject Range Query Range Percent Splice Strand
CG18145-PA 1..594 18..609 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-08 17:27:47 Download gff for BO12082.3prime
Subject Subject Range Query Range Percent Splice Strand
Ripalpha-RA 225..825 19..619 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-02 20:48:30 Download gff for BO12082.3prime
Subject Subject Range Query Range Percent Splice Strand
Ripalpha-RA 225..825 19..619 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-02 20:48:30 Download gff for BO12082.3prime
Subject Subject Range Query Range Percent Splice Strand
2L 10199835..10200236 19..420 100 <- Plus
2L 10200291..10200356 421..486 100 <- Plus
2L 10200416..10200548 487..619 96   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-08 17:27:47 Download gff for BO12082.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 10199835..10200236 19..420 100 <- Plus
arm_2L 10200291..10200356 421..486 100 <- Plus
arm_2L 10200416..10200548 487..619 96   Plus

BO12082.5prime Sequence

623 bp (622 high quality bases) assembled on 2006-04-18

> BO12082.5prime
GAAGTTATCAGTCGACATGAACTCCACTCAAAGCCCGGTTTATCGCACCT
CCGTGGAGCAAAAGCGGCATGCTCAAGAAGTGGCCAAAAGACAGCGGATG
GGCAACCAAATGCCAAGACTTCGCGAAATGCTGCGAGAGAAATACCGCAA
GCGCATCATAGAAACGCGCAATAGATGCACGGATGCCCAACGAGAAATCC
AATTGTCCGAACTCAGGGAAATCCTGCGCCTGGAACTCAGTGAGCTAGAG
AAGGATGTGGAGCTTGAGGAGCTGATTCTGGAGGAGCTACTATCCGATGT
CAACGAGTGGTATGCCCTGGGCGAAAAGAATCTGGAAACGCTATACGCAG
AGCCCGATGAGCAGCAAAAGGAGGTTTTATGCCCAGTTTGTCAGATTAAA
AACCTACGCCATCACAAAGGTGCCTTCATCTGCGAGTGTGGCATCCGCTT
CGAGCACTCTGCGAACATGGAACAGCTGCAGATACTGCTGCAACAACAAA
TCGCCAGCCATGAACTTCAGTGCACTCAGGCCCTGCGATTTTTCATCGAA
CCCGCTTCGGGACAACTATACGACATGTGCGGCAGCTGCGACTACTTCTC
CTCCGTCGCAAGCTTTCTAGACC

BO12082.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:36:46
Subject Length Description Subject Range Query Range Score Percent Strand
CG18145-PA 594 Ripalpha-RA 1..591 17..607 2955 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 21:00:23
Subject Length Description Subject Range Query Range Score Percent Strand
Ripalpha-RA 1259 CG18145-RA 231..825 13..607 2960 99.8 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 21:00:19
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 10199835..10200237 607..205 2015 100 Minus
2L 23513712 2L 10200416..10200542 139..13 620 99.2 Minus
2L 23513712 2L 10200291..10200358 205..138 340 100 Minus
Blast to na_te.dros performed on 2015-02-10 21:00:21 has no hits.

BO12082.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:25:29 Download gff for BO12082.5prime
Subject Subject Range Query Range Percent Splice Strand
CG18145-PA 1..594 17..608 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 04:56:47 Download gff for BO12082.5prime
Subject Subject Range Query Range Percent Splice Strand
CG18145-PA 1..594 17..608 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 04:04:24 Download gff for BO12082.5prime
Subject Subject Range Query Range Percent Splice Strand
Ripalpha-RA 225..825 7..607 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:41:10 Download gff for BO12082.5prime
Subject Subject Range Query Range Percent Splice Strand
Ripalpha-RA 225..825 7..607 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:41:10 Download gff for BO12082.5prime
Subject Subject Range Query Range Percent Splice Strand
2L 10200416..10200548 7..139 96   Minus
2L 10199835..10200236 206..607 100 <- Minus
2L 10200291..10200356 140..205 100 <- Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 04:04:24 Download gff for BO12082.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 10199835..10200236 206..607 100 <- Minus
arm_2L 10200291..10200356 140..205 100 <- Minus
arm_2L 10200416..10200548 7..139 96   Minus

BO12082.complete Sequence

625 bp assembled on 2006-10-11

GenBank Submission: FJ632304

> BO12082.complete
GAAGTTATCAGTCGACATGAACTCCACTCAAAGCCCGGTTTATCGCACCT
CCGTGGAGCAAAAGCGGCATGCTCAAGAAGTGGCCAAAAGACAGCGGATG
GGCAACCAAATGCCAAGACTTCGCGAAATGCTGCGAGAGAAATACCGCAA
GCGCATCATAGAAACGCGCAATAGATGCACGGATGCCCAACGAGAAATCC
AATTGTCCGAACTCAGGGAAATCCTGCGCCTGGAACTCAGTGAGCTAGAG
AAGGATGTGGAGCTTGAGGAGCTGATTCTGGAGGAGCTACTATCCGATGT
CAACGAGTGGTATGCCCTGGGCGAAAAGAATCTGGAAACGCTATACGCAG
AGCCCGATGAGCAGCAAAAGGAGGTTTTATGCCCAGTTTGTCAGATTAAA
AACCTACGCCATCACAAAGGTGCCTTCATCTGCGAGTGTGGCATCCGCTT
CGAGCACTCTGCGAACATGGAACAGCTGCAGATACTGCTGCAACAACAAA
TCGCCAGCCATGAACTTCAGTGCACTCAGGCCCTGCGATTTTTCATCGAA
CCCGCTTCGGGACAACTATACGACATGTGCGGCAGCTGCGACTACTTCTC
CTCCGTCGCAAGCTTTCTAGACCAT

BO12082.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 14:49:54
Subject Length Description Subject Range Query Range Score Percent Strand
Ripalpha-RA 594 CG18145-PA 1..591 17..607 2955 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:49:56
Subject Length Description Subject Range Query Range Score Percent Strand
Ripalpha-RA 1259 CG18145-RA 231..825 13..607 2960 99.8 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 14:49:52
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 10199835..10200237 607..205 2015 100 Minus
2L 23513712 2L 10200416..10200542 139..13 620 99.2 Minus
2L 23513712 2L 10200291..10200358 205..138 340 100 Minus
Blast to na_te.dros performed on 2014-11-27 14:49:53 has no hits.

BO12082.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 13:39:57 Download gff for BO12082.complete
Subject Subject Range Query Range Percent Splice Strand
Ripalpha-RA 1..594 17..608 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 02:00:27 Download gff for BO12082.complete
Subject Subject Range Query Range Percent Splice Strand
Ripalpha-RA 223..823 7..607 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:45:45 Download gff for BO12082.complete
Subject Subject Range Query Range Percent Splice Strand
Ripalpha-RA 235..825 17..609 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 13:39:57 Download gff for BO12082.complete
Subject Subject Range Query Range Percent Splice Strand
Ripalpha-RA 223..823 7..607 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:53:42 Download gff for BO12082.complete
Subject Subject Range Query Range Percent Splice Strand
Ripalpha-RA 235..825 17..609 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 15:53:42 Download gff for BO12082.complete
Subject Subject Range Query Range Percent Splice Strand
2L 10199833..10200236 206..609 99 <- Minus
2L 10200291..10200356 140..205 100 <- Minus
2L 10200416..10200538 17..139 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:45:45 Download gff for BO12082.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 10200291..10200356 140..205 100 <- Minus
arm_2L 10200416..10200538 17..139 100   Minus
arm_2L 10199833..10200236 206..609 99 <- Minus

BO12082.pep Sequence

Translation from 16 to 625

> BO12082.pep
MNSTQSPVYRTSVEQKRHAQEVAKRQRMGNQMPRLREMLREKYRKRIIET
RNRCTDAQREIQLSELREILRLELSELEKDVELEELILEELLSDVNEWYA
LGEKNLETLYAEPDEQQKEVLCPVCQIKNLRHHKGAFICECGIRFEHSAN
MEQLQILLQQQIASHELQCTQALRFFIEPASGQLYDMCGSCDYFSSVASF
LDH

BO12082.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:53:09
Subject Length Description Subject Range Query Range Score Percent Strand
Ripalpha-PA 197 CG18145-PA 1..197 1..197 1019 100 Plus