Clone Sequence Records
BO12087.3prime Sequence
891 bp (782 high quality bases) assembled on 2006-04-20
> BO12087.3prime
ATGGTCTAGAAAGCTTGCGCTACCCAAAAGACTGGCCGCTATGGCCTCCG
TGTCCATTAGAGTCATCTTGTTCGTCAGCTTGGACTTTTTGTAGGCGGGT
TCATCGTCGGAGACGTCGTCGTCGTCGCCGTCGCTGTCGTCAGCTTTCTC
GTCATCGGATGCATCGCTGGACTCTGATTTGGATTCATTTCGATCCGAAG
CGTTAGGCTTATTTTTGTAAACCTTATCGGGATCCGGCAGCCAGGAGAGG
TCCACTGAATGGTCACTCTCACTGCCAGCATCGTCCGCATTGTCATCGTC
CTGTTGCTCCTCTTCGTCGTCGCTGCCCTTGGCCTCCTCCGCCTTTTTCC
GCAGCTTCTCGCGCTGCAGTTTGTGGCGCTTCTTGACCAGCTCCCGGAAT
CGCTGCTTGTCATATTGATCCTCCTCGGTGAGTAGCGCCTTGGACAGCAC
TAGATTAATGCCTCCATCGTCGTCGTCTTGGTTCACTGTTCTTTGCCTGG
CACTCAAGGCCTTCATTTGGCTGCGATCATCTGCCATAGTTTCGCCCTCG
TCATCGAACTTCAGCTTGGAGTTGACCTGCAGATTCTTCTTCAGCGCCTT
CTTGGCCAGCGAGGCCTTGGTTACCAGCTTCTCGCGCTTGGGTACCACAA
GTGGGGCCTCTGCCTCATTCTCAGTGTCATCCTCTTCGTCCAGCTTCACT
GGCTCTCCTTCCACATCGTGATCCTTACGTTTCACCTTGAAAAGTCTTCG
TCATCACTGTTCTCTTCATCCTCGTCACCGCCGCCAAAGCTCTGCTGCTT
GGTCAGCTTGCTGAGCAATGGATTGATCGATTTTGCGTTATCACCCTGTT
CTTTCTGCTGCTGTAGCTGCTTCTGGCGCCACAGGAATTTT
BO12087.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:36:52
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG5800-PA | 2481 | CG5800-RA | 1757..2478 | 740..19 | 3610 | 100 | Minus |
| CG5800-PA | 2481 | CG5800-RA | 1605..1755 | 891..741 | 755 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 01:23:07
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG5800-RA | 2647 | CG5800-RA | 1692..2565 | 891..19 | 4345 | 99.9 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 01:23:02
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 17638048..17638921 | 891..19 | 4320 | 99.9 | Minus |
Blast to na_te.dros performed on 2015-02-12 01:23:04 has no hits.
BO12087.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:25:39 Download gff for
BO12087.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5800-PA | 1605..2481 | 15..891 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 04:57:01 Download gff for
BO12087.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5800-PA | 1605..2481 | 15..891 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 13:26:20 Download gff for
BO12087.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5800-RA | 1692..2569 | 14..891 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 05:33:32 Download gff for
BO12087.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5800-RA | 1692..2569 | 14..891 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 05:33:32 Download gff for
BO12087.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 17638048..17638925 | 14..891 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 13:26:20 Download gff for
BO12087.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 17532081..17532958 | 14..891 | 99 | | Minus |
BO12087.5prime Sequence
853 bp (821 high quality bases) assembled on 2006-04-18
> BO12087.5prime
GAAGTTATCAGTCGACATGCAGCGCCAGAAACCCAAGGGACCCGGCAAAC
CGGGTTCGCGCTTCAAGCCGGGATCCGGCACGTTCAAAGGAGCTGGTGGT
GGCCGGAAAAGCGGCGACAACAGCCAGAAGCGTCCGCGCCAGGAGATCAA
CAAGTCGCGACTGGCCGCCACCGAAGCGGAGATCCAGGACCTCAAGACCA
AATACGCAGAGATCGATGCTACTGCCATTAAGAAGTTCGCCCAGTTTCCG
CTGTCCAAGAAGACCCAAAAGGCACTGGCGGAGTCCAAATTCGTGCATCC
CACGCAGGTGCAGCGGGACAGCATTGGACCCGCACTGCAGGGCAAGGATG
TGCTGGGCGCGGCCATCACAGGCAGTGGCAAGACACTGGCCTTTCTCATA
CCCGTTCTGGAGCATCTGTTCATGAACAAATGGTCGCGCACCGATGGCGT
TGGCGCTATCATCATCTCGCCCACCCGCGAGCTAGCCTACCAGATCTTCG
AGACCCTAAAGAAGGTGGGAAAGCACCACGACTTCTCCGCCGGCCTCATC
ATCGGAGGCAAGAACCTGAAGTTCGAGCGCACTCGCATGGACCAGTGCAA
CATACTGATCTGCACACCCGGAAGGCTGCTGCAGCACATGGACGAGAATC
CTCTCTTTAATACGAGCACCATGGAGATGTTGGTCCTGGATGAAGCCGAT
CGCTGTTTGGATATGGGTTTCCAGAAGACCCTGAATTCAATCATAGAAAA
TTTCCCACCAGTGCGTCAAACGCTGCTATTCTCGGCCACGCAAACGAATA
CGGTGCAGGATTTGGCGAGGCTTAATCTAAAGGATCCGGTCTACGTAGGC
TAC
BO12087.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:36:53
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG5800-PA | 2481 | CG5800-RA | 1..837 | 17..853 | 4160 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 01:33:39
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG5800-RA | 2647 | CG5800-RA | 88..924 | 17..853 | 4170 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 01:33:35
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 17636831..17637280 | 404..853 | 2250 | 100 | Plus |
| X | 23542271 | X | 17636368..17636756 | 17..405 | 1930 | 99.7 | Plus |
Blast to na_te.dros performed 2015-02-12 01:33:37
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| roo | 9092 | roo DM_ROO 9092bp | 1038..1161 | 77..194 | 136 | 62.4 | Plus |
BO12087.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:25:40 Download gff for
BO12087.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5800-PA | 1..837 | 17..853 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 04:57:04 Download gff for
BO12087.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5800-PA | 1..837 | 17..853 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 21:21:11 Download gff for
BO12087.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5800-RA | 80..924 | 9..853 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 06:29:17 Download gff for
BO12087.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5800-RA | 80..924 | 9..853 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 06:29:17 Download gff for
BO12087.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 17636360..17636754 | 9..403 | 98 | -> | Plus |
| X | 17636831..17637280 | 404..853 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 21:21:11 Download gff for
BO12087.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 17530393..17530787 | 9..403 | 98 | -> | Plus |
| arm_X | 17530864..17531313 | 404..853 | 100 | | Plus |
BO12087.complete Sequence
2512 bp assembled on 2008-01-17
GenBank Submission: FJ632305
> BO12087.complete
GAAGTTATCAGTCGACATGCAGCGCCAGAAACCCAAGGGACCCGGCAAAC
CGGGTTCGCGCTTCAAGCCGGGATCCGGCACGTTCAAAGGAGCTGGTGGT
GGCCGGAAAAGCGGCGACAACAGCCAGAAGCGTCCGCGCCAGGAGATCAA
CAAGTCGCGACTGGCCGCCACCGAAGCGGAGATCCAGGACCTCAAGACCA
AATACGCAGAGATCGATGCTACTGCCATTAAGAAGTTCGCCCAGTTTCCG
CTGTCCAAGAAGACCCAAAAGGCACTGGCGGAGTCCAAATTCGTGCATCC
CACGCAGGTGCAGCGGGACAGCATTGGACCCGCACTGCAGGGCAAGGATG
TGCTGGGCGCGGCCATCACAGGCAGTGGCAAGACACTGGCCTTTCTCATA
CCCGTTCTGGAGCATCTGTTCATGAACAAATGGTCGCGCACCGATGGCGT
TGGCGCTATCATCATCTCGCCCACCCGCGAGCTAGCCTACCAGATCTTCG
AGACCCTAAAGAAGGTGGGAAAGCACCACGACTTCTCCGCCGGCCTCATC
ATCGGAGGCAAGAACCTGAAGTTCGAGCGCACTCGCATGGACCAGTGCAA
CATACTGATCTGCACACCCGGAAGGCTGCTGCAGCACATGGACGAGAATC
CTCTCTTTAATACGAGCACCATGGAGATGTTGGTCCTGGATGAAGCCGAT
CGCTGTTTGGATATGGGTTTCCAGAAGACCCTGAATTCAATCATAGAAAA
TTTCCCACCAGTGCGTCAAACGCTGCTATTCTCGGCCACGCAAACGAATA
CGGTGCAGGATTTGGCGAGGCTTAATCTAAAGGATCCGGTCTACGTAGGC
TACGGAGGAGCGACGCCAAGAGAAGAGCCCAGCGCCAGCACGAAGAAGAC
TCCGAACACAGCTGTCTTGGCAGTTCCTGAGCTTTTGCAGCAGAGTTATG
TGGTGTTGAACCTGGAGGACAAGATCACCATGCTGTGGTCGTTCATCAAG
AACCATTTGAAGCAGAAGATCATTGTGTTCGTGGCCAGTTGCAAGCAGGC
CAAGTACCTGTACGAGATATTTTGTAAACTGCGGCCGGGTAGCCCGCTGC
TGGCTCTCTATGGAACGCTCCATCAGGATCGTCGCATTGCCATCTACGAG
GATTTCCTTCGCAAGAGCCACGTCGTTATGTTCTCCACTGATGTGGCATC
GCGCGGTCTGGACTTTCCTGCCGTCAATTGGGTGGTGCAGTTGGACTGCC
CGGAGGATGTTTCACAGTACATTCATCGAGCTGGACGATCTGCGCGGAAC
AAGACACGCGGCGAGTGTCTGTTGGTTTTGACACCCAGCGAGGAGGAGTA
CATGATTAGTGCGCTTAAGGAACAGTTGAATATCGACATTCGTTGTGTGC
AAATCGATCCCAAGAAGCTCTTCTCTCCGCGCGTCAAGATCGAGGCCTTT
CTGGCCCAATTTCCCGAACTGAGGGCAACCGCCCAGCGCGCCTTCCTCTC
CTACATAAAATCCGTATTCCTGATGCGCAACAAGCGCTTGTTTAATGTGT
TCAGCCTGGATCTAGATGCATTTGCCCAATCGCTCGGCTTGGCGGTTACG
CCGCGTGTTCCCTTCCTCGAAAAATTCCTGTGGCGCCAGAAGCAGCTACA
GCAGCAGAAAGAACAGGGTGATAACGCAAAATCGATCAATCCATTGCTCA
GCAAGCTGACCAAGCAGCAGAGCTTTGGCGGCGGTGACGAGGATGAAGAG
AACAGTGATGACGAAGACTTTATCAAGGTGAAACGTAAGGATCACGATGT
GGAAGGAGAGCCAGTGAAGCTGGACGAAGAGGATGACACTGAGAATGAGG
CAGAGGCCCCACTTGTGGTACCCAAGCGCGAGAAGCTGGTAACCAAGGCC
TCGCTGGCCAAGAAGGCGCTGAAGAAGAATCTGCAGGTCAACTCCAAGCT
GAAGTTCGATGACGAGGGCGAAACTATGGCAGATGATCGCAGCCAAATGA
AGGCCTTGAGTGCCAGGCAAAGAACAGTGAACCAAGACGACGACGATGGA
GGCATTAATCTAGTGCTGTCCAAGGCGCTACTCACCGAGGAGGATCAATA
TGACAAGCAGCGATTCCGGGAGCTGGTCAAGAAGCGCCACAAACTGCAGC
GCGAGAAGCTGCGGAAAAAGGCGGAGGAGGCCAAGGGCAGCGACGACGAA
GAGGAGCAACAGGACGATGACAATGCGGACGATGCTGGCAGTGAGAGTGA
CCATTCAGTGGACCTCTCCTGGCTGCCGGATCCCGATAAGGTTTACAAAA
ATAAGCCTAACGCTTCGGATCGAAATGAATCCAAATCAGAGTCCAGCGAT
GCATCCGATGACGAGAAAGCTGACGACAGCGACGGCGACGACGACGACGT
CTCCGACGATGAACCCGCCTACAAAAAGTCCAAGCTGACGAACAAGATGA
CTCTAATGGACACGGAGGCCATAGCGGCCAGTCTTTTGGGTAGCGCAAGC
TTTCTAGACCAT
BO12087.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 00:30:13
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG5800-RA | 2481 | CG5800-PA | 1..2478 | 17..2494 | 12360 | 99.9 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 00:30:14
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG5800-RA | 2647 | CG5800-RA | 88..2565 | 17..2494 | 12360 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 00:30:10
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 17636831..17638921 | 404..2494 | 10440 | 100 | Plus |
| X | 23542271 | X | 17636368..17636756 | 17..405 | 1930 | 99.7 | Plus |
Blast to na_te.dros performed 2014-11-28 00:30:12
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| roo | 9092 | roo DM_ROO 9092bp | 1038..1161 | 77..194 | 136 | 62.4 | Plus |
BO12087.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 13:59:51 Download gff for
BO12087.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5800-RA | 1..2481 | 17..2498 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-07-28 15:31:41 Download gff for
BO12087.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5800-RA | 86..2563 | 17..2496 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:25:51 Download gff for
BO12087.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5800-RA | 88..2565 | 17..2496 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 13:59:51 Download gff for
BO12087.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5800-RA | 78..2567 | 9..2499 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:33:01 Download gff for
BO12087.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5800-RA | 88..2565 | 17..2496 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:33:01 Download gff for
BO12087.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 17636368..17636754 | 17..403 | 99 | -> | Plus |
| X | 17636831..17638921 | 404..2496 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:25:51 Download gff for
BO12087.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 17530401..17530787 | 17..403 | 99 | -> | Plus |
| arm_X | 17530864..17532954 | 404..2496 | 99 | | Plus |
BO12087.pep Sequence
Translation from 16 to 2512
> BO12087.pep
MQRQKPKGPGKPGSRFKPGSGTFKGAGGGRKSGDNSQKRPRQEINKSRLA
ATEAEIQDLKTKYAEIDATAIKKFAQFPLSKKTQKALAESKFVHPTQVQR
DSIGPALQGKDVLGAAITGSGKTLAFLIPVLEHLFMNKWSRTDGVGAIII
SPTRELAYQIFETLKKVGKHHDFSAGLIIGGKNLKFERTRMDQCNILICT
PGRLLQHMDENPLFNTSTMEMLVLDEADRCLDMGFQKTLNSIIENFPPVR
QTLLFSATQTNTVQDLARLNLKDPVYVGYGGATPREEPSASTKKTPNTAV
LAVPELLQQSYVVLNLEDKITMLWSFIKNHLKQKIIVFVASCKQAKYLYE
IFCKLRPGSPLLALYGTLHQDRRIAIYEDFLRKSHVVMFSTDVASRGLDF
PAVNWVVQLDCPEDVSQYIHRAGRSARNKTRGECLLVLTPSEEEYMISAL
KEQLNIDIRCVQIDPKKLFSPRVKIEAFLAQFPELRATAQRAFLSYIKSV
FLMRNKRLFNVFSLDLDAFAQSLGLAVTPRVPFLEKFLWRQKQLQQQKEQ
GDNAKSINPLLSKLTKQQSFGGGDEDEENSDDEDFIKVKRKDHDVEGEPV
KLDEEDDTENEAEAPLVVPKREKLVTKASLAKKALKKNLQVNSKLKFDDE
GETMADDRSQMKALSARQRTVNQDDDDGGINLVLSKALLTEEDQYDKQRF
RELVKKRHKLQREKLRKKAEEAKGSDDEEEQQDDDNADDAGSESDHSVDL
SWLPDPDKVYKNKPNASDRNESKSESSDASDDEKADDSDGDDDDVSDDEP
AYKKSKLTNKMTLMDTEAIAASLLGSASFLDH
BO12087.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 02:26:42
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG5800-PA | 826 | CG5800-PA | 1..826 | 1..826 | 4229 | 100 | Plus |
| pit-PC | 680 | CG6375-PC | 194..629 | 79..531 | 774 | 38.2 | Plus |
| pit-PA | 680 | CG6375-PA | 194..629 | 79..531 | 774 | 38.2 | Plus |
| pit-PB | 680 | CG6375-PB | 194..629 | 79..531 | 774 | 38.2 | Plus |
| CG9630-PA | 613 | CG9630-PA | 13..477 | 78..537 | 597 | 34.8 | Plus |
