Clone BO12088 Report

Search the DGRC for BO12088

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:120
Well:88
Vector:pDNR-Dual
Associated Gene/TranscriptCG5756-RB
Protein status:BO12088.pep:
Sequenced Size:2260

Clone Sequence Records

BO12088.3prime Sequence

848 bp (789 high quality bases) assembled on 2006-04-20

> BO12088.3prime
ATGGTCTAGAAAGCTTGCGAAGCGCCGCAACCGGCGTCGCAGTTGCTGTG
TGATATCGTTGGGCAGTCGACCAACGCTGCTCTGGGGAACATCGTATGAA
GTACGTCCGGCATAGAAGGCCCGTTCCCGACTTTTGCCCGATCCGGAGAA
GTTGTTCTTGCCCTTGGTATCCGTCAGCTGCAGCTGACTGGACGAAACAT
CGCTGCGCTTTTGTGCCAACTGCAAGCCAGGTATCAAGCCATTGGGCAGC
GTGGGCAGCTGCACATTCAGGTGATCCACATGGCGTCCGGCTATCACCGG
TCCCTGGGCAATATTTCCCGTGGATATCGACACGGGTGGAGCCAACGGCG
GGAACTGGGGCAACTGTTGCTGCTGCTGATGGTAGGGCACAAAGATATTG
GGCGTAAGATAGGGTTGCTGATTGGTGTGGATCGTCGTCCGCTGTTGCTG
CTGCTGGAAGTGTTGCTGCTGCTGTTGCTGTTGTGGCTGTTTATATTGCT
GGTAGATACTCTGCTGCTGCGGCTGCTGGTATTGCTGCGAGATAAAGCTC
AATTGCTGCTGCACAGGCTGGCGTTGCTGTTGCACGAGCTGATGTTGCTG
CTGCAGCACAGGTTGCCGTTGCTGTTGCTGTTGCTGCTGCAAGGACAGAG
TGGCTTGCTGCTGATAATGTGGCTGTTGTTCCTGCTGCAAAGTGGCAGCA
GAATGAACATTACTGCTGGCTGCAGGACTCTGACCAAATTTGTTGTTAAG
GAAATCGTTGAGGGAGACATAGGAGTTGCCCTGGTTGCTGGTCCTGTGCT
GAGTGGCCAGCTGGAATGATGCTGTGGCGGAGTGGGAGCATACGCTGC

BO12088.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:36:54
Subject Length Description Subject Range Query Range Score Percent Strand
CG5756-PA 3618 CG5756-RA 2841..3615 793..19 3875 100 Minus
CG5756-PB 2229 CG5756-RB 1452..2226 793..19 3875 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-06 12:55:03
Subject Length Description Subject Range Query Range Score Percent Strand
CG5756-RC 4100 CG5756-RC 3071..3907 847..19 3985 99 Minus
CG5756-RB 2666 CG5756-RB 1637..2473 847..19 3985 99 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-06 12:54:56
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 18101254..18102028 19..793 3875 100 Plus
Blast to na_te.dros performed 2015-02-06 12:54:59
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6736..6996 640..365 401 65.4 Minus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2219..2531 672..355 288 59.7 Minus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2273..2467 560..365 220 63.1 Minus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6726..6861 503..365 208 67.6 Minus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6707..6853 499..355 169 63.3 Minus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2273..2382 518..414 160 66.1 Minus
gypsy11 4428 gypsy11 GYPSY11 4428bp 960..1034 696..617 117 66.2 Minus

BO12088.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:25:41 Download gff for BO12088.3prime
Subject Subject Range Query Range Percent Splice Strand
CG5756-PB 1388..2229 16..848 98   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 04:57:06 Download gff for BO12088.3prime
Subject Subject Range Query Range Percent Splice Strand
CG5756-PB 1388..2229 16..848 98   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-11 07:05:27 Download gff for BO12088.3prime
Subject Subject Range Query Range Percent Splice Strand
CG5756-RB 1635..2477 15..848 98   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-06 13:45:02 Download gff for BO12088.3prime
Subject Subject Range Query Range Percent Splice Strand
CG5756-RB 1635..2477 15..848 98   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-06 13:45:02 Download gff for BO12088.3prime
Subject Subject Range Query Range Percent Splice Strand
2R 18101250..18102079 15..838 98 -> Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-11 07:05:27 Download gff for BO12088.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 13988755..13989584 15..838 98 -> Plus

BO12088.5prime Sequence

882 bp (792 high quality bases) assembled on 2006-04-18

> BO12088.5prime
GAAGTTATCAGTCGACATGTGGCCACCCAGCTCCTGTCTGTGGTTGGCTC
TCGCCCTCCTGGTGGGCGTGGCCCAGGCCCAGAGCGGCAGTCGAGAGCAC
TTCGAGGATGCGGACAAGTCCAGCGAGTATACGGATCAGCAGTTCGATCT
ACGGCACACGATTCCCGGAGAACCGGGCCTAGACTATCCCATTCTAAGTT
CGCCGCCAAGGACCAGCTTTGTGTGCAAGGGAAGACATGAAGGTTATTAC
GCGGATGTAGAAAGTCGCTGCCAGGCCTTCCGCATTTGTGCCCATACCGC
CCGATCACCCCAAGGATTCGGTTTCCTCTGCCCCAACGGAACGCTCTTCA
GCCAGAAGAACTTTGTGTGCGATTGGTACCGCAATGTGAACTGCGATGAT
TCTGAAAAGTATTATGAAATGAACGAGGAGAAAACCGTTGGCAGCACCCA
CGAAATGATGGAGCGAGTGCGTCACATGATGGAATACCCCATGAAAACAA
TTTCAAAGGCCTTGCAACAAACCCAATCCCAGTCACAGAATCCACACCAT
AGTCTTAGCAAGGATCTAAGCGGAGCTAGTGGTGTTTTGAGTCAACCTGC
GGCCATTAAGCTCAATGATCCTGAAACCCAAGTTGTTGGACGCGGAGAAG
ACGTGAAAAGTGAGCCATTGAGTGCAGTACAACTAGGAAGCATTAACCCC
GGGGACAGCGAAGATGAGGGTATTTATGTGAATAGTTTGGGAGAACTTTC
TTCAGATCCAGGCATTCAGTTTGATCACACCAATGCCCATATCGTGGCAG
AATATCCCAGGGAGTACCACTACCAGAAGCAGAAAAACTTTGCCGAGCGT
GTTAACGCGGGCTTGGATATCCAACTGACTCG

BO12088.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:36:54
Subject Length Description Subject Range Query Range Score Percent Strand
CG5756-PA 3618 CG5756-RA 1..856 17..872 4230 99.7 Plus
CG5756-PB 2229 CG5756-RB 1..856 17..872 4230 99.7 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 07:27:56
Subject Length Description Subject Range Query Range Score Percent Strand
CG5756-RC 4100 CG5756-RC 247..1114 16..882 4285 99.7 Plus
CG5756-RB 2666 CG5756-RB 247..1114 16..882 4285 99.7 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 07:27:50
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 18104298..18104940 882..241 3135 99.5 Minus
2R 25286936 2R 18105082..18105310 244..16 1145 100 Minus
Blast to na_te.dros performed on 2015-02-10 07:27:53 has no hits.

BO12088.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:25:42 Download gff for BO12088.5prime
Subject Subject Range Query Range Percent Splice Strand
CG5756-PB 1..867 17..882 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 04:57:08 Download gff for BO12088.5prime
Subject Subject Range Query Range Percent Splice Strand
CG5756-PB 1..867 17..882 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-13 09:32:30 Download gff for BO12088.5prime
Subject Subject Range Query Range Percent Splice Strand
CG5756-RB 247..1114 16..882 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 10:50:18 Download gff for BO12088.5prime
Subject Subject Range Query Range Percent Splice Strand
CG5756-RB 247..1114 16..882 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 10:50:18 Download gff for BO12088.5prime
Subject Subject Range Query Range Percent Splice Strand
2R 18104298..18104938 243..882 99 <- Minus
2R 18105084..18105317 8..242 98   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-13 09:32:30 Download gff for BO12088.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 13991803..13992443 243..882 99 <- Minus
arm_2R 13992589..13992822 8..242 98   Minus

BO12088.complete Sequence

2260 bp assembled on 2008-01-17

GenBank Submission: FJ632306

> BO12088.complete
GAAGTTATCAGTCGACATGTGGCCACCCAGCTCCTGTCTGTGGTTGGCTC
TCGCCCTCCTGGTGGGCGTGGCCCAGGCCCAGAGCGGCAGTCGAGAGCAC
TTCGAGGATGCGGACAAGTCCAGCGAGTATACGGATCAGCAGTTCGATCT
ACGGCACACGATTCCCGGAGAACCGGGCCTAGACTATCCCATTCTAAGTT
CGCCGCCAAGGACCAGCTTTGTGTGCAAGGGAAGACATGAAGGTTATTAC
GCGGATGTAGAAAGTCGCTGCCAGGCCTTCCGCATTTGTGCCCATACCGC
CCGATCACCCCAAGGATTCGGTTTCCTCTGCCCCAACGGAACGCTCTTCA
GCCAGAAGAACTTTGTGTGCGATTGGTACCGCAATGTGAACTGCGATGAT
TCTGAAAAGTATTATGAAATGAACGAGGAGAAAACCGTTGGCAGCACCCA
CGAAATGATGGAGCGAGTGCGTCACATGATGGAATACCCCATGAAAACAA
TTTCAAAGGCCTTGCAACAAACCCAATCCCAGTCACAGAATCCACACCAT
AGTCTTAGCAAGGATCTAAGCGGAGCTAGTGGTGTTTTGAGTCAACCTGC
GGCCATTAAGCTCAATGATCCTGAAACCCAAGTTGTTGGACGCGGAGAAG
ACGTGAAAAGTGAGCCATTGAGTGCAGTACAACTAGGAAGCATTAACCCC
GGGGACAGCGAAGATGAGGGTATTTATGTGAATAGTTTGGGAGAACTTTC
TTCAGATCCAGGCATTCAGTTTGATCACACCAATGCCCATATCGTGGCAG
AATATCCCAGGGAGTACCACTACCAGAAGCAGAAGAACTTTGCCGAGCGT
GTTAACGCGGGCTTGGATATCCTAACTGACTCGGAATCCAACTCCGGTGA
GGCTATGGCACCCGATTACATCAAGCATATAAGAAATACTAAGGACGAGG
CCGTACAACTAGATCTGGTATCGAATATAAACAATCTGCTGGATGAAGTA
TCCACTGATGTGGATCCCTCCATTTCCGGCTATCAATCTATGGCACCGCC
GAAAGTTAAGCAACCTTTCCGATTCCTAAGTCGTGGATTCTCCATGCAGC
GTGAAAACGGAAAGGGTAGCTCATCTTCCGGTTATGGCTACATTAAACCC
AAACAAACGCCCAGCACTGTCAGATTTACGAATTTTAAGAGTGCCCAGTC
GCAGGGTTCCAATCAAGCGCAGCAAAACCAGCGCCAGCAGCAGCAGCAGC
ATCAAGTGGCCAAGCAGCAACATCACTCGGTTAGCAGCAGCTATGTGAAG
CCAGCAGCAGCGCCAGCTATTTCCAGTCTGACTGTACCACAACGACCCCA
ACAAACATCGCAGTCATCTGTGCCGCCAGGAATTGTGATTGCTCGAGCTG
AGGGCCAGCGTATTGCTCCCAACTCCGCCAGCAGCATCATTTCCAGCTTG
GCCACTCAAGCACCAGTGACCAGCAACCAGGGCAACTCCTATGTCTCCCT
CAACGATTTCCTTAACAACAAATTTGGTCAGAGTCCTGCAGCCAGCAGTA
ATGTTCATTCTGCTGCCACTTTGCAGCAGGAACAACAGCCACATTATCAG
CAGCAAGCCACTCTGTCCTTGCAGCAGCAACAGCAACAGCAACGGCAACC
TGTGCTGCAGCAGCAACATCAGCTCGTGCAACAGCAACGCCAGCCTGTGC
AGCAGCAATTGAGCTTTATCTCGCAGCAATACCAGCAGCCGCAGCAGCAG
AGTATCTACCAGCAATATAAACAGCCACAACAGCAACAGCAGCAGCAACA
CTTCCAGCAGCAGCAACAGCGGACGACGATCCACACCAATCAGCAACCCT
ATCTTACGCCCAATATCTTTGTGCCCTACCATCAGCAGCAGCAACAGTTG
CCCCAGTTCCCGCCGTTGGCTCCACCCGTGTCGATATCCACGGGAAATAT
TGCCCAGGGACCGGTGATAGCCGGACGCCATGTGGATCACCTGAATGTGC
AGCTGCCCACGCTGCCCAATGGCTTGATACCTGGCTTGCAGTTGGCACAA
AAGCGCAGCGATGTTTCGTCCAGTCAGCTGCAGCTGACGGATACCAAGGG
CAAGAACAACTTCTCCGGATCGGGCAAAAGTCGGGAACGGGCCTTCTATG
CCGGACGTACTTCATACGATGTTCCCCAGAGCAGCGTTGGTCGACTGCCC
AACGATATCACACAGCAACTGCGACGCCGGTTGCGGCGCTTCGCAAGCTT
TCTAGACCAT

BO12088.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 01:44:05
Subject Length Description Subject Range Query Range Score Percent Strand
CG5756-RB 2229 CG5756-PB 1..2226 17..2242 11115 100 Plus
CG5756-RC 3663 CG5756-PC 1..1164 17..1180 5805 99.9 Plus
CG5756-RC 3663 CG5756-PC 2598..3660 1180..2242 5315 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 01:44:07
Subject Length Description Subject Range Query Range Score Percent Strand
CG5756-RB 2666 CG5756-RB 247..2473 16..2242 11120 100 Plus
CG5756-RC 4100 CG5756-RC 247..1411 16..1180 5810 99.9 Plus
CG5756-RC 4100 CG5756-RC 2845..3907 1180..2242 5315 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 01:44:02
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 18104001..18104940 1180..241 4685 99.9 Minus
2R 25286936 2R 18101254..18102182 2242..1314 4645 100 Minus
2R 25286936 2R 18105082..18105310 244..16 1145 100 Minus
2R 25286936 2R 18102237..18102373 1316..1180 685 100 Minus
Blast to na_te.dros performed 2014-11-27 01:44:03
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6736..6996 1621..1896 401 65.4 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2219..2531 1589..1906 288 59.7 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6722..6924 1700..1899 268 62.4 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2273..2467 1701..1896 220 63.1 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6726..6861 1758..1896 208 67.6 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6707..6853 1762..1906 169 63.3 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2273..2382 1743..1847 160 66.1 Plus

BO12088.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 13:59:53 Download gff for BO12088.complete
Subject Subject Range Query Range Percent Splice Strand
CG5756-RB 1..2229 17..2245 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-07-28 15:29:23 Download gff for BO12088.complete
Subject Subject Range Query Range Percent Splice Strand
CG5756-RB 245..2470 17..2244 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 05:00:36 Download gff for BO12088.complete
Subject Subject Range Query Range Percent Splice Strand
CG5756-RB 248..2473 17..2244 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 13:59:53 Download gff for BO12088.complete
Subject Subject Range Query Range Percent Splice Strand
CG5756-RB 244..2474 16..2246 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 02:30:51 Download gff for BO12088.complete
Subject Subject Range Query Range Percent Splice Strand
CG5756-RB 248..2473 17..2244 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 02:30:51 Download gff for BO12088.complete
Subject Subject Range Query Range Percent Splice Strand
2R 18101251..18102179 1317..2244 99 <- Minus
2R 18102237..18102372 1181..1316 100 <- Minus
2R 18104001..18104938 243..1180 99 <- Minus
2R 18105084..18105309 17..242 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 05:00:36 Download gff for BO12088.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 13992589..13992814 17..242 100   Minus
arm_2R 13988756..13989684 1317..2244 99 <- Minus
arm_2R 13989742..13989877 1181..1316 100 <- Minus
arm_2R 13991506..13992443 243..1180 99 <- Minus

BO12088.pep Sequence

Translation from 16 to 2260

> BO12088.pep
MWPPSSCLWLALALLVGVAQAQSGSREHFEDADKSSEYTDQQFDLRHTIP
GEPGLDYPILSSPPRTSFVCKGRHEGYYADVESRCQAFRICAHTARSPQG
FGFLCPNGTLFSQKNFVCDWYRNVNCDDSEKYYEMNEEKTVGSTHEMMER
VRHMMEYPMKTISKALQQTQSQSQNPHHSLSKDLSGASGVLSQPAAIKLN
DPETQVVGRGEDVKSEPLSAVQLGSINPGDSEDEGIYVNSLGELSSDPGI
QFDHTNAHIVAEYPREYHYQKQKNFAERVNAGLDILTDSESNSGEAMAPD
YIKHIRNTKDEAVQLDLVSNINNLLDEVSTDVDPSISGYQSMAPPKVKQP
FRFLSRGFSMQRENGKGSSSSGYGYIKPKQTPSTVRFTNFKSAQSQGSNQ
AQQNQRQQQQQHQVAKQQHHSVSSSYVKPAAAPAISSLTVPQRPQQTSQS
SVPPGIVIARAEGQRIAPNSASSIISSLATQAPVTSNQGNSYVSLNDFLN
NKFGQSPAASSNVHSAATLQQEQQPHYQQQATLSLQQQQQQQRQPVLQQQ
HQLVQQQRQPVQQQLSFISQQYQQPQQQSIYQQYKQPQQQQQQQHFQQQQ
QRTTIHTNQQPYLTPNIFVPYHQQQQQLPQFPPLAPPVSISTGNIAQGPV
IAGRHVDHLNVQLPTLPNGLIPGLQLAQKRSDVSSSQLQLTDTKGKNNFS
GSGKSRERAFYAGRTSYDVPQSSVGRLPNDITQQLRRRLRRFASFLDH

BO12088.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 02:26:38
Subject Length Description Subject Range Query Range Score Percent Strand
CG5756-PB 742 CG5756-PB 1..742 1..742 3861 100 Plus
CG5756-PC 1220 CG5756-PC 1..459 1..481 2064 83.8 Plus
CG5756-PC 1220 CG5756-PC 867..1220 389..742 1805 100 Plus
CG32036-PC 173 CG32036-PC 1..142 1..138 247 36.4 Plus
CG14301-PB 196 CG14301-PB 75..168 41..136 245 48.5 Plus
CG13675-PC 151 CG13675-PC 55..137 54..138 234 48.8 Plus