Clone Sequence Records
BO12088.3prime Sequence
848 bp (789 high quality bases) assembled on 2006-04-20
> BO12088.3prime
ATGGTCTAGAAAGCTTGCGAAGCGCCGCAACCGGCGTCGCAGTTGCTGTG
TGATATCGTTGGGCAGTCGACCAACGCTGCTCTGGGGAACATCGTATGAA
GTACGTCCGGCATAGAAGGCCCGTTCCCGACTTTTGCCCGATCCGGAGAA
GTTGTTCTTGCCCTTGGTATCCGTCAGCTGCAGCTGACTGGACGAAACAT
CGCTGCGCTTTTGTGCCAACTGCAAGCCAGGTATCAAGCCATTGGGCAGC
GTGGGCAGCTGCACATTCAGGTGATCCACATGGCGTCCGGCTATCACCGG
TCCCTGGGCAATATTTCCCGTGGATATCGACACGGGTGGAGCCAACGGCG
GGAACTGGGGCAACTGTTGCTGCTGCTGATGGTAGGGCACAAAGATATTG
GGCGTAAGATAGGGTTGCTGATTGGTGTGGATCGTCGTCCGCTGTTGCTG
CTGCTGGAAGTGTTGCTGCTGCTGTTGCTGTTGTGGCTGTTTATATTGCT
GGTAGATACTCTGCTGCTGCGGCTGCTGGTATTGCTGCGAGATAAAGCTC
AATTGCTGCTGCACAGGCTGGCGTTGCTGTTGCACGAGCTGATGTTGCTG
CTGCAGCACAGGTTGCCGTTGCTGTTGCTGTTGCTGCTGCAAGGACAGAG
TGGCTTGCTGCTGATAATGTGGCTGTTGTTCCTGCTGCAAAGTGGCAGCA
GAATGAACATTACTGCTGGCTGCAGGACTCTGACCAAATTTGTTGTTAAG
GAAATCGTTGAGGGAGACATAGGAGTTGCCCTGGTTGCTGGTCCTGTGCT
GAGTGGCCAGCTGGAATGATGCTGTGGCGGAGTGGGAGCATACGCTGC
BO12088.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:36:54
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5756-PA | 3618 | CG5756-RA | 2841..3615 | 793..19 | 3875 | 100 | Minus |
CG5756-PB | 2229 | CG5756-RB | 1452..2226 | 793..19 | 3875 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-06 12:55:03
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5756-RC | 4100 | CG5756-RC | 3071..3907 | 847..19 | 3985 | 99 | Minus |
CG5756-RB | 2666 | CG5756-RB | 1637..2473 | 847..19 | 3985 | 99 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-06 12:54:56
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 18101254..18102028 | 19..793 | 3875 | 100 | Plus |
Blast to na_te.dros performed 2015-02-06 12:54:59
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6736..6996 | 640..365 | 401 | 65.4 | Minus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2219..2531 | 672..355 | 288 | 59.7 | Minus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2273..2467 | 560..365 | 220 | 63.1 | Minus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6726..6861 | 503..365 | 208 | 67.6 | Minus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6707..6853 | 499..355 | 169 | 63.3 | Minus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2273..2382 | 518..414 | 160 | 66.1 | Minus |
gypsy11 | 4428 | gypsy11 GYPSY11 4428bp | 960..1034 | 696..617 | 117 | 66.2 | Minus |
BO12088.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:25:41 Download gff for
BO12088.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5756-PB | 1388..2229 | 16..848 | 98 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 04:57:06 Download gff for
BO12088.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5756-PB | 1388..2229 | 16..848 | 98 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-11 07:05:27 Download gff for
BO12088.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5756-RB | 1635..2477 | 15..848 | 98 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-06 13:45:02 Download gff for
BO12088.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5756-RB | 1635..2477 | 15..848 | 98 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-06 13:45:02 Download gff for
BO12088.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 18101250..18102079 | 15..838 | 98 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-11 07:05:27 Download gff for
BO12088.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 13988755..13989584 | 15..838 | 98 | -> | Plus |
BO12088.5prime Sequence
882 bp (792 high quality bases) assembled on 2006-04-18
> BO12088.5prime
GAAGTTATCAGTCGACATGTGGCCACCCAGCTCCTGTCTGTGGTTGGCTC
TCGCCCTCCTGGTGGGCGTGGCCCAGGCCCAGAGCGGCAGTCGAGAGCAC
TTCGAGGATGCGGACAAGTCCAGCGAGTATACGGATCAGCAGTTCGATCT
ACGGCACACGATTCCCGGAGAACCGGGCCTAGACTATCCCATTCTAAGTT
CGCCGCCAAGGACCAGCTTTGTGTGCAAGGGAAGACATGAAGGTTATTAC
GCGGATGTAGAAAGTCGCTGCCAGGCCTTCCGCATTTGTGCCCATACCGC
CCGATCACCCCAAGGATTCGGTTTCCTCTGCCCCAACGGAACGCTCTTCA
GCCAGAAGAACTTTGTGTGCGATTGGTACCGCAATGTGAACTGCGATGAT
TCTGAAAAGTATTATGAAATGAACGAGGAGAAAACCGTTGGCAGCACCCA
CGAAATGATGGAGCGAGTGCGTCACATGATGGAATACCCCATGAAAACAA
TTTCAAAGGCCTTGCAACAAACCCAATCCCAGTCACAGAATCCACACCAT
AGTCTTAGCAAGGATCTAAGCGGAGCTAGTGGTGTTTTGAGTCAACCTGC
GGCCATTAAGCTCAATGATCCTGAAACCCAAGTTGTTGGACGCGGAGAAG
ACGTGAAAAGTGAGCCATTGAGTGCAGTACAACTAGGAAGCATTAACCCC
GGGGACAGCGAAGATGAGGGTATTTATGTGAATAGTTTGGGAGAACTTTC
TTCAGATCCAGGCATTCAGTTTGATCACACCAATGCCCATATCGTGGCAG
AATATCCCAGGGAGTACCACTACCAGAAGCAGAAAAACTTTGCCGAGCGT
GTTAACGCGGGCTTGGATATCCAACTGACTCG
BO12088.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:36:54
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5756-PA | 3618 | CG5756-RA | 1..856 | 17..872 | 4230 | 99.7 | Plus |
CG5756-PB | 2229 | CG5756-RB | 1..856 | 17..872 | 4230 | 99.7 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 07:27:56
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5756-RC | 4100 | CG5756-RC | 247..1114 | 16..882 | 4285 | 99.7 | Plus |
CG5756-RB | 2666 | CG5756-RB | 247..1114 | 16..882 | 4285 | 99.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 07:27:50
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 18104298..18104940 | 882..241 | 3135 | 99.5 | Minus |
2R | 25286936 | 2R | 18105082..18105310 | 244..16 | 1145 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-10 07:27:53 has no hits.
BO12088.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:25:42 Download gff for
BO12088.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5756-PB | 1..867 | 17..882 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 04:57:08 Download gff for
BO12088.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5756-PB | 1..867 | 17..882 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-13 09:32:30 Download gff for
BO12088.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5756-RB | 247..1114 | 16..882 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 10:50:18 Download gff for
BO12088.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5756-RB | 247..1114 | 16..882 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 10:50:18 Download gff for
BO12088.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 18104298..18104938 | 243..882 | 99 | <- | Minus |
2R | 18105084..18105317 | 8..242 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-13 09:32:30 Download gff for
BO12088.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 13991803..13992443 | 243..882 | 99 | <- | Minus |
arm_2R | 13992589..13992822 | 8..242 | 98 | | Minus |
BO12088.complete Sequence
2260 bp assembled on 2008-01-17
GenBank Submission: FJ632306
> BO12088.complete
GAAGTTATCAGTCGACATGTGGCCACCCAGCTCCTGTCTGTGGTTGGCTC
TCGCCCTCCTGGTGGGCGTGGCCCAGGCCCAGAGCGGCAGTCGAGAGCAC
TTCGAGGATGCGGACAAGTCCAGCGAGTATACGGATCAGCAGTTCGATCT
ACGGCACACGATTCCCGGAGAACCGGGCCTAGACTATCCCATTCTAAGTT
CGCCGCCAAGGACCAGCTTTGTGTGCAAGGGAAGACATGAAGGTTATTAC
GCGGATGTAGAAAGTCGCTGCCAGGCCTTCCGCATTTGTGCCCATACCGC
CCGATCACCCCAAGGATTCGGTTTCCTCTGCCCCAACGGAACGCTCTTCA
GCCAGAAGAACTTTGTGTGCGATTGGTACCGCAATGTGAACTGCGATGAT
TCTGAAAAGTATTATGAAATGAACGAGGAGAAAACCGTTGGCAGCACCCA
CGAAATGATGGAGCGAGTGCGTCACATGATGGAATACCCCATGAAAACAA
TTTCAAAGGCCTTGCAACAAACCCAATCCCAGTCACAGAATCCACACCAT
AGTCTTAGCAAGGATCTAAGCGGAGCTAGTGGTGTTTTGAGTCAACCTGC
GGCCATTAAGCTCAATGATCCTGAAACCCAAGTTGTTGGACGCGGAGAAG
ACGTGAAAAGTGAGCCATTGAGTGCAGTACAACTAGGAAGCATTAACCCC
GGGGACAGCGAAGATGAGGGTATTTATGTGAATAGTTTGGGAGAACTTTC
TTCAGATCCAGGCATTCAGTTTGATCACACCAATGCCCATATCGTGGCAG
AATATCCCAGGGAGTACCACTACCAGAAGCAGAAGAACTTTGCCGAGCGT
GTTAACGCGGGCTTGGATATCCTAACTGACTCGGAATCCAACTCCGGTGA
GGCTATGGCACCCGATTACATCAAGCATATAAGAAATACTAAGGACGAGG
CCGTACAACTAGATCTGGTATCGAATATAAACAATCTGCTGGATGAAGTA
TCCACTGATGTGGATCCCTCCATTTCCGGCTATCAATCTATGGCACCGCC
GAAAGTTAAGCAACCTTTCCGATTCCTAAGTCGTGGATTCTCCATGCAGC
GTGAAAACGGAAAGGGTAGCTCATCTTCCGGTTATGGCTACATTAAACCC
AAACAAACGCCCAGCACTGTCAGATTTACGAATTTTAAGAGTGCCCAGTC
GCAGGGTTCCAATCAAGCGCAGCAAAACCAGCGCCAGCAGCAGCAGCAGC
ATCAAGTGGCCAAGCAGCAACATCACTCGGTTAGCAGCAGCTATGTGAAG
CCAGCAGCAGCGCCAGCTATTTCCAGTCTGACTGTACCACAACGACCCCA
ACAAACATCGCAGTCATCTGTGCCGCCAGGAATTGTGATTGCTCGAGCTG
AGGGCCAGCGTATTGCTCCCAACTCCGCCAGCAGCATCATTTCCAGCTTG
GCCACTCAAGCACCAGTGACCAGCAACCAGGGCAACTCCTATGTCTCCCT
CAACGATTTCCTTAACAACAAATTTGGTCAGAGTCCTGCAGCCAGCAGTA
ATGTTCATTCTGCTGCCACTTTGCAGCAGGAACAACAGCCACATTATCAG
CAGCAAGCCACTCTGTCCTTGCAGCAGCAACAGCAACAGCAACGGCAACC
TGTGCTGCAGCAGCAACATCAGCTCGTGCAACAGCAACGCCAGCCTGTGC
AGCAGCAATTGAGCTTTATCTCGCAGCAATACCAGCAGCCGCAGCAGCAG
AGTATCTACCAGCAATATAAACAGCCACAACAGCAACAGCAGCAGCAACA
CTTCCAGCAGCAGCAACAGCGGACGACGATCCACACCAATCAGCAACCCT
ATCTTACGCCCAATATCTTTGTGCCCTACCATCAGCAGCAGCAACAGTTG
CCCCAGTTCCCGCCGTTGGCTCCACCCGTGTCGATATCCACGGGAAATAT
TGCCCAGGGACCGGTGATAGCCGGACGCCATGTGGATCACCTGAATGTGC
AGCTGCCCACGCTGCCCAATGGCTTGATACCTGGCTTGCAGTTGGCACAA
AAGCGCAGCGATGTTTCGTCCAGTCAGCTGCAGCTGACGGATACCAAGGG
CAAGAACAACTTCTCCGGATCGGGCAAAAGTCGGGAACGGGCCTTCTATG
CCGGACGTACTTCATACGATGTTCCCCAGAGCAGCGTTGGTCGACTGCCC
AACGATATCACACAGCAACTGCGACGCCGGTTGCGGCGCTTCGCAAGCTT
TCTAGACCAT
BO12088.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 01:44:05
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5756-RB | 2229 | CG5756-PB | 1..2226 | 17..2242 | 11115 | 100 | Plus |
CG5756-RC | 3663 | CG5756-PC | 1..1164 | 17..1180 | 5805 | 99.9 | Plus |
CG5756-RC | 3663 | CG5756-PC | 2598..3660 | 1180..2242 | 5315 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 01:44:07
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5756-RB | 2666 | CG5756-RB | 247..2473 | 16..2242 | 11120 | 100 | Plus |
CG5756-RC | 4100 | CG5756-RC | 247..1411 | 16..1180 | 5810 | 99.9 | Plus |
CG5756-RC | 4100 | CG5756-RC | 2845..3907 | 1180..2242 | 5315 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 01:44:02
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 18104001..18104940 | 1180..241 | 4685 | 99.9 | Minus |
2R | 25286936 | 2R | 18101254..18102182 | 2242..1314 | 4645 | 100 | Minus |
2R | 25286936 | 2R | 18105082..18105310 | 244..16 | 1145 | 100 | Minus |
2R | 25286936 | 2R | 18102237..18102373 | 1316..1180 | 685 | 100 | Minus |
Blast to na_te.dros performed 2014-11-27 01:44:03
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6736..6996 | 1621..1896 | 401 | 65.4 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2219..2531 | 1589..1906 | 288 | 59.7 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6722..6924 | 1700..1899 | 268 | 62.4 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2273..2467 | 1701..1896 | 220 | 63.1 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6726..6861 | 1758..1896 | 208 | 67.6 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6707..6853 | 1762..1906 | 169 | 63.3 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2273..2382 | 1743..1847 | 160 | 66.1 | Plus |
BO12088.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 13:59:53 Download gff for
BO12088.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5756-RB | 1..2229 | 17..2245 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-07-28 15:29:23 Download gff for
BO12088.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5756-RB | 245..2470 | 17..2244 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 05:00:36 Download gff for
BO12088.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5756-RB | 248..2473 | 17..2244 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 13:59:53 Download gff for
BO12088.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5756-RB | 244..2474 | 16..2246 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 02:30:51 Download gff for
BO12088.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5756-RB | 248..2473 | 17..2244 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 02:30:51 Download gff for
BO12088.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 18101251..18102179 | 1317..2244 | 99 | <- | Minus |
2R | 18102237..18102372 | 1181..1316 | 100 | <- | Minus |
2R | 18104001..18104938 | 243..1180 | 99 | <- | Minus |
2R | 18105084..18105309 | 17..242 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 05:00:36 Download gff for
BO12088.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 13992589..13992814 | 17..242 | 100 | | Minus |
arm_2R | 13988756..13989684 | 1317..2244 | 99 | <- | Minus |
arm_2R | 13989742..13989877 | 1181..1316 | 100 | <- | Minus |
arm_2R | 13991506..13992443 | 243..1180 | 99 | <- | Minus |
BO12088.pep Sequence
Translation from 16 to 2260
> BO12088.pep
MWPPSSCLWLALALLVGVAQAQSGSREHFEDADKSSEYTDQQFDLRHTIP
GEPGLDYPILSSPPRTSFVCKGRHEGYYADVESRCQAFRICAHTARSPQG
FGFLCPNGTLFSQKNFVCDWYRNVNCDDSEKYYEMNEEKTVGSTHEMMER
VRHMMEYPMKTISKALQQTQSQSQNPHHSLSKDLSGASGVLSQPAAIKLN
DPETQVVGRGEDVKSEPLSAVQLGSINPGDSEDEGIYVNSLGELSSDPGI
QFDHTNAHIVAEYPREYHYQKQKNFAERVNAGLDILTDSESNSGEAMAPD
YIKHIRNTKDEAVQLDLVSNINNLLDEVSTDVDPSISGYQSMAPPKVKQP
FRFLSRGFSMQRENGKGSSSSGYGYIKPKQTPSTVRFTNFKSAQSQGSNQ
AQQNQRQQQQQHQVAKQQHHSVSSSYVKPAAAPAISSLTVPQRPQQTSQS
SVPPGIVIARAEGQRIAPNSASSIISSLATQAPVTSNQGNSYVSLNDFLN
NKFGQSPAASSNVHSAATLQQEQQPHYQQQATLSLQQQQQQQRQPVLQQQ
HQLVQQQRQPVQQQLSFISQQYQQPQQQSIYQQYKQPQQQQQQQHFQQQQ
QRTTIHTNQQPYLTPNIFVPYHQQQQQLPQFPPLAPPVSISTGNIAQGPV
IAGRHVDHLNVQLPTLPNGLIPGLQLAQKRSDVSSSQLQLTDTKGKNNFS
GSGKSRERAFYAGRTSYDVPQSSVGRLPNDITQQLRRRLRRFASFLDH
BO12088.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 02:26:38
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5756-PB | 742 | CG5756-PB | 1..742 | 1..742 | 3861 | 100 | Plus |
CG5756-PC | 1220 | CG5756-PC | 1..459 | 1..481 | 2064 | 83.8 | Plus |
CG5756-PC | 1220 | CG5756-PC | 867..1220 | 389..742 | 1805 | 100 | Plus |
CG32036-PC | 173 | CG32036-PC | 1..142 | 1..138 | 247 | 36.4 | Plus |
CG14301-PB | 196 | CG14301-PB | 75..168 | 41..136 | 245 | 48.5 | Plus |
CG13675-PC | 151 | CG13675-PC | 55..137 | 54..138 | 234 | 48.8 | Plus |