Clone BO12093 Report

Search the DGRC for BO12093

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:120
Well:93
Vector:pDNR-Dual
Associated Gene/TranscriptCG8298-RA
Protein status:BO12093.pep:
Sequenced Size:1822

Clone Sequence Records

BO12093.5prime Sequence

845 bp (781 high quality bases) assembled on 2006-04-18

> BO12093.5prime
GAAGTTATCAGTCGACATGTCCAACGGTCGTTACGGGAGGTTCGGAGCAC
TCATCGGCGTCGCCTGCGTGAGCAGCACCCACTGCCGCTTTCTGATATAC
TCAACGAAAAATGCCGAGGTCCTGGCCTACCATGAGCTGAAGCTGCGACA
GATTGTCCACCAGGCGGGCTGGATGGAGTACGATCCGTCGGAGATATGGA
AGAACACACAGGAGTGCATAGAGACCGCCTATAAGAACCTGGTTATACTA
GAGATCAATCCACGTGATATTATTGCCATCGGTATCGTAAATCAGCGGGG
CACCTCGGTGTTATGGAATTTGGAGACGGGACAGCCACTGCACAATGCCA
TCGGATGGTCAGATTGCCGTAGCACTCCCATCCTAAAGACCCTGCTCCAT
AATGTCCGGCACAATGTGGACTACGTGAGGTATCGCAGTGGCTTGCCCCT
GAGCAGCTGTTTCAGTGCCCTAAAGATCCGTTGGCTAATGGATCACGTTC
CTGCCGTAGCCACTGCCATTGAGGAGAACAAGTGCTTATTCGGCACCTTG
GACTCCTGGCTTCTGTGGAACCTAACCGGCGGCGTTGAGATGGGTGTGCA
CTCTACTGACATTACCAATGCCCACTACACTTCCCTTATGAACGTGTCCA
CAGAGCAGTGGGATCCTAAACTCTGCCAGTTCTTTCGATTGCCCCTGAAC
ATACTGCCACGCATACGATCCAACTCCGAAATCTTCGGCTATGTGCTGGA
GGGTCCTTTGCATGGCACTCCCATAGCGGCCATGATGGGTGAGCAGCCCG
CCAGTTTGTTGGGCCAACTCTGCGTGAAGGCCGGGCAAAATGTCT

BO12093.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:37:01
Subject Length Description Subject Range Query Range Score Percent Strand
CG8298-PA 1791 CG8298-RA 1..829 17..845 4095 99.7 Plus
CG8298-PB 1635 CG8298-RB 1..673 173..845 3340 99.8 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 22:37:07
Subject Length Description Subject Range Query Range Score Percent Strand
CG8298-RC 2978 CG8298-RC 120..948 17..845 4115 99.8 Plus
CG8298-RA 2069 CG8298-RA 120..948 17..845 4115 99.8 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 22:37:01
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 11989565..11990188 222..845 3105 99.8 Plus
2R 25286936 2R 11989381..11989510 94..223 650 100 Plus
2R 25286936 2R 11989250..11989327 17..94 375 98.7 Plus
Blast to na_te.dros performed on 2015-02-10 22:37:04 has no hits.

BO12093.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:25:52 Download gff for BO12093.5prime
Subject Subject Range Query Range Percent Splice Strand
CG8298-PA 1..829 17..845 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 04:57:23 Download gff for BO12093.5prime
Subject Subject Range Query Range Percent Splice Strand
CG8298-PA 1..829 17..845 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-22 05:41:38 Download gff for BO12093.5prime
Subject Subject Range Query Range Percent Splice Strand
CG8298-RA 120..948 17..845 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 00:12:57 Download gff for BO12093.5prime
Subject Subject Range Query Range Percent Splice Strand
CG8298-RA 120..948 17..845 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 00:12:57 Download gff for BO12093.5prime
Subject Subject Range Query Range Percent Splice Strand
2R 11989250..11989327 17..94 98 -> Plus
2R 11989382..11989510 95..223 100 -> Plus
2R 11989567..11990188 224..845 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-22 05:41:38 Download gff for BO12093.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 7876755..7876832 17..94 98 -> Plus
arm_2R 7876887..7877015 95..223 100 -> Plus
arm_2R 7877072..7877693 224..845 99   Plus

BO12093.3prime Sequence

617 bp (593 high quality bases) assembled on 2006-04-20

> BO12093.3prime
ATGGTCTAGAAAGCTTGCTTTCAGGGGATTGGACTTTAAGTAGTTAGCCA
GGATAATCATCGCAAAAGAAGTGGTCAGGAATATACTGCCCGGTACGGAA
CGCCTTACAGGTAAATTGGGATCAAGTTCTCGCTGAGCAAACAGCTCAAT
ATCAGCCTCGTACGTCTCGTAGTTGTTCCAGTGCAGGCATTTCTTTACCG
CATAAGCCCAGCGCTTGTAGAGCAGCTCTCGACGATTTTTGGTAGTTGTT
GGCGAAAAGACATCAGTGGGCGGGGTGTACATTTTTACGGCGTGCTCCAG
GGACACCACTTTCATCGTCACGCCCGCGGTTATCATAACGCCCAATCCAG
CAGGTGAGGTGGTCTGTGGACGCTCCAACATATAGCCAATAATATCTGCT
ATGAACTGCACCAAATGCAAGTTTTCGGCGTAATCACCGCCGAATGTCAG
CACGGGTTGCATGCTGGATCGGTCCCAGTTGGGTGTATCGCGCTTGAACG
CCTGTAGCACTTCAAAGATCTGGAACCCGGTGGCCTCGTAAGCAGCTTGG
GTAATGTTTTCCGCTGTAGTCTGGCTGGTAAGTCCCAAGATTATGCCCCT
GGCATCGTGTCGCCAGT

BO12093.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:37:00
Subject Length Description Subject Range Query Range Score Percent Strand
CG8298-PA 1791 CG8298-RA 1190..1788 617..19 2995 100 Minus
CG8298-PB 1635 CG8298-RB 1034..1632 617..19 2995 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 01:22:58
Subject Length Description Subject Range Query Range Score Percent Strand
CG8298-RC 2978 CG8298-RC 1309..1907 617..19 2995 100 Minus
CG8298-RA 2069 CG8298-RA 1309..1907 617..19 2995 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 01:22:53
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 11990549..11990934 617..232 1930 100 Minus
2R 25286936 2R 11991065..11991279 233..19 1075 100 Minus
Blast to na_te.dros performed on 2015-02-12 01:22:56 has no hits.

BO12093.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:25:51 Download gff for BO12093.3prime
Subject Subject Range Query Range Percent Splice Strand
CG8298-PA 1190..1791 18..617 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 04:57:22 Download gff for BO12093.3prime
Subject Subject Range Query Range Percent Splice Strand
CG8298-PB 1034..1635 18..617 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 13:26:19 Download gff for BO12093.3prime
Subject Subject Range Query Range Percent Splice Strand
CG8298-RA 1309..1907 19..617 100   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 05:33:09 Download gff for BO12093.3prime
Subject Subject Range Query Range Percent Splice Strand
CG8298-RA 1309..1907 19..617 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 05:33:09 Download gff for BO12093.3prime
Subject Subject Range Query Range Percent Splice Strand
2R 11991065..11991279 19..233 100   Minus
2R 11990549..11990932 234..617 100 -> Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 13:26:19 Download gff for BO12093.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 7878054..7878437 234..617 100 -> Minus
arm_2R 7878570..7878784 19..233 100   Minus

BO12093.complete Sequence

1822 bp assembled on 2008-01-17

GenBank Submission: FJ632307

> BO12093.complete
GAAGTTATCAGTCGACATGTCCAACGGTCGTTACGGGAGGTTCGGAGCAC
TCATCGGCGTCGCCTGCGTGAGCAGCACCCACTGCCGCTTTCTGATATAC
TCAACGAAAAATGCCGAGGTCCTGGCCTACCATGAGCTGAAGCTGCGACA
GATTGTCCACCAGGCGGGCTGGATGGAGTACGATCCGTCGGAGATATGGA
AGAACACACAGGAGTGCATAGAGACCGCCTATAAGAACCTGGTTATACTA
GAGATCAATCCACGTGATATTATTGCCATCGGTATCGTAAATCAGCGGGG
CACCTCGGTGTTATGGAATTTGGAGACGGGACAGCCACTGCACAATGCCA
TCGGATGGTCAGATTGCCGTAGCACTCCCATCCTAAAGACCCTGCTCCAT
AATGTCCGGCACAATGTGGACTACGTGAGGTATCGCAGTGGCTTGCCCCT
GAGCAGCTGTTTCAGTGCCCTAAAGATCCGTTGGCTAATGGATCACGTTC
CTGCCGTAGCCACTGCCATTGAGGAGAACAAGTGCTTATTCGGCACCTTG
GACTCCTGGCTTCTGTGGAACCTAACCGGCGGCGTTGAGATGGGTGTGCA
CTCTACTGACATTACCAATGCCCACTACACTTCCCTTATGAACGTGTCCA
CAGAGCAGTGGGATCCTAAACTCTGCCAGTTCTTTCGATTGCCCCTGAAC
ATACTGCCACGCATACGATCCAACTCCGAAATCTTCGGCTATGTGCTGGA
GGGTCCTTTGCATGGCACTCCCATAGCGGCCATGATGGGTGAGCAGCCCG
CAAGTTTGTTGGGCCAACTCTGCGTGAAGGCCGGGCAAAATGTCTGTACC
CTGGACGACAGCTGTTTCGTGCTCCTTAACACGGGCAGGGAGAAGCTGGA
CTCTGCAAACGGACTGATAACGGGCATAGCGCACAAGCTGGGCGAAAAAG
CGGCCACTAACTACACACTCGAGGGAGCCATTTCAAATGCCGGTTCCACG
GTTACATGGCTGCGGGATAAGCTACAGATCAATACTGAGATTAATTCCAA
TGATAATGTGGTGGAGTCTTTGAATACATTCATCGGCGAGAACTCGATGA
TCTCGTCCTCTTGTTCCTCATCCATGCTGAATGCCGAGTGTGGACTGGCA
GCCAAGAGGTCGGAGATTACGTTTGTGCCGGCATTTCATGGCATGTACGC
ACCCTACTGGCGACACGATGCCAGGGGCATAATCTTGGGACTTACCAGCC
AGACTACAGCGGAAAACATTACCCAAGCTGCTTACGAGGCCACCGGGTTC
CAGATCTTTGAAGTGCTACAGGCGTTCAAGCGCGATACACCCAACTGGGA
CCGATCCAGCATGCAACCCGTGCTGACATTCGGCGGTGATTACGCCGAAA
ACTTGCATTTGGTGCAGTTCATAGCAGATATTATTGGCTATATGTTGGAG
CGTCCACAGACCACCTCACCTGCTGGATTGGGCGTTATGATAACCGCGGG
CGTGACGATGAAAGTGGTGTCCCTGGAGCACGCCGTAAAAATGTACACCC
CGCCCACTGATGTCTTTTCGCCAACAACTACCAAAAATCGTCGAGAGCTG
CTCTACAAGCGCTGGGCTTATGCGGTAAAGAAATGCCTGCACTGGAACAA
CTACGAGACGTACGAGGCTGATATTGAGCTGTTTGCTCAGCGAGAACTTG
ATCCCAATTTACCTGTAAGGCGTTCCGTACCGGGCAGTATATTCCTGACC
ACTTCTTTTGCGATGATTATCCTGGCTAACTACTTAAAGTCCAATCCCCT
GAAAGCAAGCTTTCTAGACCAT

BO12093.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 14:19:18
Subject Length Description Subject Range Query Range Score Percent Strand
CG8298-RC 1791 CG8298-PC 1..1788 17..1804 8925 99.9 Plus
CG8298-RA 1791 CG8298-PA 1..1788 17..1804 8925 99.9 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:19:19
Subject Length Description Subject Range Query Range Score Percent Strand
CG8298-RC 2978 CG8298-RC 120..1907 17..1804 8925 99.9 Plus
CG8298-RA 2069 CG8298-RA 120..1907 17..1804 8925 99.9 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 14:19:16
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 11989565..11990934 222..1591 6850 100 Plus
2R 25286936 2R 11991065..11991279 1590..1804 1075 100 Plus
2R 25286936 2R 11989381..11989510 94..223 650 100 Plus
2R 25286936 2R 11989250..11989327 17..94 375 98.7 Plus
Blast to na_te.dros performed on 2014-11-27 14:19:17 has no hits.

BO12093.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 13:59:54 Download gff for BO12093.complete
Subject Subject Range Query Range Percent Splice Strand
CG8298-RA 1..1791 17..1805 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-07-28 15:35:49 Download gff for BO12093.complete
Subject Subject Range Query Range Percent Splice Strand
CG8298-RA 118..1905 17..1806 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:39:51 Download gff for BO12093.complete
Subject Subject Range Query Range Percent Splice Strand
CG8298-RA 120..1907 17..1806 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 13:59:54 Download gff for BO12093.complete
Subject Subject Range Query Range Percent Splice Strand
CG8298-RA 118..1905 17..1804 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:08:38 Download gff for BO12093.complete
Subject Subject Range Query Range Percent Splice Strand
CG8298-RA 120..1907 17..1806 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 15:08:38 Download gff for BO12093.complete
Subject Subject Range Query Range Percent Splice Strand
2R 11989250..11989327 17..94 98 -> Plus
2R 11989382..11989510 95..223 100 -> Plus
2R 11989567..11990932 224..1589 100 -> Plus
2R 11991065..11991279 1590..1806 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:39:51 Download gff for BO12093.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 7878570..7878784 1590..1806 99   Plus
arm_2R 7876755..7876832 17..94 98 -> Plus
arm_2R 7876887..7877015 95..223 100 -> Plus
arm_2R 7877072..7878437 224..1589 100 -> Plus

BO12093.pep Sequence

Translation from 16 to 1822

> BO12093.pep
MSNGRYGRFGALIGVACVSSTHCRFLIYSTKNAEVLAYHELKLRQIVHQA
GWMEYDPSEIWKNTQECIETAYKNLVILEINPRDIIAIGIVNQRGTSVLW
NLETGQPLHNAIGWSDCRSTPILKTLLHNVRHNVDYVRYRSGLPLSSCFS
ALKIRWLMDHVPAVATAIEENKCLFGTLDSWLLWNLTGGVEMGVHSTDIT
NAHYTSLMNVSTEQWDPKLCQFFRLPLNILPRIRSNSEIFGYVLEGPLHG
TPIAAMMGEQPASLLGQLCVKAGQNVCTLDDSCFVLLNTGREKLDSANGL
ITGIAHKLGEKAATNYTLEGAISNAGSTVTWLRDKLQINTEINSNDNVVE
SLNTFIGENSMISSSCSSSMLNAECGLAAKRSEITFVPAFHGMYAPYWRH
DARGIILGLTSQTTAENITQAAYEATGFQIFEVLQAFKRDTPNWDRSSMQ
PVLTFGGDYAENLHLVQFIADIIGYMLERPQTTSPAGLGVMITAGVTMKV
VSLEHAVKMYTPPTDVFSPTTTKNRRELLYKRWAYAVKKCLHWNNYETYE
ADIELFAQRELDPNLPVRRSVPGSIFLTTSFAMIILANYLKSNPLKASFL
DH

BO12093.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 02:26:20
Subject Length Description Subject Range Query Range Score Percent Strand
CG8298-PC 596 CG8298-PC 1..596 1..596 3141 100 Plus
CG8298-PA 596 CG8298-PA 1..596 1..596 3141 100 Plus
Gyk-PA 538 CG18374-PA 17..535 10..556 971 36.8 Plus
Gk-PF 576 CG7995-PF 32..568 12..585 908 36.9 Plus
Gk-PA 576 CG7995-PA 32..568 12..585 908 36.9 Plus