Clone Sequence Records
BO12101.3prime Sequence
983 bp (862 high quality bases) assembled on 2006-04-20
> BO12101.3prime
ATGGTCTAGAAAGCTTGCAGCAGCAATCCCATCCAGGGAGTCCAACAGCT
CCCGCTGCAGATCTTCCTGGGGCAGGGCAGTGGAGTTAACAAAGTTTTCC
CTGTCGAACCACTCCCTGTGGTTCTCCAAGTAGTTGATGAAGGCGTCGAG
GTGGGGAAGTAGATCTTCTAGCTTCTTGTTGCTGATCGGCGATGCGTTTA
AGAACATGGGCATTTTAATCATTAGCCTAACCAGGTGGGGAGCGCCAAAG
ACCATGGACTTTTCTGGCGGCGATTCCGCTGACAAAAGCCGCCACTTGAA
TGTTTCGTTCAGAAATCCACGCATCTCCACGGGCAGTTTGTAGGCAGCCG
TATATGGGGAAGTCCTCTCATAGGCCTGCGCAGTGTTTTTCCCGCTGGCG
GTAACAATGTAGAGCAGGCATTTTTGCAACTGCTTCTCGTACTCCGGACC
GCCGATATTAATAACTCCGATCTGTCCATTGGTGTCGCCCGACCCTTCTA
CCACTGGCGTGCCGTCCAGACCGATCAGTTCCGTGTCACCGCTGGGATTG
ATATACTCGTACGACTTGTTCAATATTAGGCTGCAGTTGCGCATGTTGTC
GTCTGTGAGGTAGTTGTGGACATACTCCTTCTCCTCCGTATACAGCAAGT
GGTCATCCACGTGGAACTCAAAGTAGATACGCAATCCGTCTACCACCTCC
TTCAGCATGCAGACAGTGGACATAACGCGATCGTATTCCCGCTCCATTCT
GGCATTGCGACTCTGCGTGTTCCTGGCCCTCGAGCTGTCCTGTTTAATGC
TAATGGCTAGCTCCACGGCCTGCTGCTTGACGAAGTTTTCCATGATGGTC
ACGATGGGCACGCGGGCGGGCAGTGCGTGCTGTTTGCCTAGTACCTTGAT
CATATTCCGATCGTACTCTATAAGCTCTCGCAATCGCTCGCTGACTCGCA
TCATAATGCGATCCTCCTGTGGCACATGGTTAT
BO12101.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:37:05
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8631-PA | 1539 | msl-3-RA | 572..1536 | 983..19 | 4825 | 100 | Minus |
CG8631-PB | 1446 | msl-3-RB | 479..1443 | 983..19 | 4825 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 03:54:36
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
msl-3-RA | 1970 | CG8631-RA | 683..1647 | 983..19 | 4825 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 03:54:34
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 7123846..7124342 | 219..715 | 2485 | 100 | Plus |
3L | 28110227 | 3L | 7124401..7124668 | 716..983 | 1340 | 100 | Plus |
3L | 28110227 | 3L | 7123536..7123654 | 19..137 | 580 | 99.2 | Plus |
3L | 28110227 | 3L | 7123706..7123790 | 134..218 | 425 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-12 03:54:35 has no hits.
BO12101.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:25:58 Download gff for
BO12101.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
msl-3-PB | 479..1446 | 18..983 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 04:57:33 Download gff for
BO12101.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8631-PB | 479..1446 | 18..983 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 22:56:10 Download gff for
BO12101.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
msl-3-RA | 683..1656 | 6..983 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 06:49:13 Download gff for
BO12101.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
msl-3-RA | 683..1656 | 6..983 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 06:49:13 Download gff for
BO12101.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 7123527..7123650 | 6..133 | 96 | <- | Plus |
3L | 7123706..7123790 | 134..218 | 100 | <- | Plus |
3L | 7123846..7124342 | 219..715 | 100 | <- | Plus |
3L | 7124401..7124668 | 716..983 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 22:56:10 Download gff for
BO12101.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 7116627..7116750 | 6..133 | 96 | <- | Plus |
arm_3L | 7116806..7116890 | 134..218 | 100 | <- | Plus |
arm_3L | 7116946..7117442 | 219..715 | 100 | <- | Plus |
arm_3L | 7117501..7117768 | 716..983 | 100 | | Plus |
BO12101.5prime Sequence
964 bp (748 high quality bases) assembled on 2006-04-20
> BO12101.5prime
GAAGTTATCAGTCGACATGACGGAGCTAAGGGACGAGACACCGCTCTTTC
ACAAGGGCGAGATAGTCCTTTGCTACGAGCCGGATAAATCGAAGGCCCGT
GTTCTTTACACCAGCAAGGTGCTAAACGTCTTTGAGCGCCGGAACGAGCA
TGGCCTGAGGTTCTACGAGTACAAGATTCACTTCCAGGGCTGGCGTCCAT
CCTACGATCGCTGTGTGCGCGCCACCGTTCTATTGAAAGACACCGAGGAG
AATCGCCAGTTGCAAAGGGAGCTGGCCGAAGCTGCCAAGCTGCAAATTCG
TGGTGACTACTCCTACAAGGGCACACCCGATAAGCCATCGGCCAAGAAGA
AACGCGGCGGAAAAGCGGCCCACGTTGAGGAGCCAATAGTGGTTCCAATG
GACACGGGACATCTTGAGGCGGAGCACGAAATGGCGCCCACTCCACGAGC
AGCGGGCAACCGGACGCGGGACAACAGCGGTGGCAAGCGAAAGGAAAAAC
CCCCGTCCGGAGATGGCCGATTAAAGGGAAACCGGGGCAGACAAACAGAG
ACCTTTTATAACAATGCCATAAATGATGTATCGGTCTATAACCATGTGCC
ACAGGAGGATCGCATTATGATGCGAGTCAGCGAGCGATTGCGAGAGCTTA
TAGAGTACGATCGGAATATGATCAAGGTACTAGGCAAACAGCACGCACTG
CCCGCCCGCGTGCCCATCGTGACCATCATGGAAAACTTCGTCAAGCAGCA
GGCCGTGGAGCTAGCCATTAGCATTAAACAGGACAGCTCGAGGGCCAGGA
ACACGCAGAGTCGCAATGCCAGAATGGAGCGGGAATACGATCGCGTTATG
TCCACTGTCTGCATGCTGAAGGAGGTGGTAGACGGATTGCGTATCTACTT
TTGAGTCCACGTGGATGACCACTTGCTGTATACGGAGGAGAAGGAGTATG
TCCACAACTACCTC
BO12101.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:37:06
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8631-PA | 1539 | msl-3-RA | 1..885 | 17..901 | 4425 | 100 | Plus |
CG8631-PB | 1446 | msl-3-RB | 8..792 | 117..901 | 3925 | 100 | Plus |
CG8631-PA | 1539 | msl-3-RA | 890..948 | 906..964 | 295 | 100 | Plus |
CG8631-PB | 1446 | msl-3-RB | 797..855 | 906..964 | 295 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 19:45:26
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
msl-3-RA | 1970 | CG8631-RA | 112..1059 | 17..964 | 4695 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 19:45:23
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 7124401..7124958 | 855..298 | 2790 | 100 | Minus |
3L | 28110227 | 3L | 7125025..7125205 | 297..117 | 905 | 100 | Minus |
3L | 28110227 | 3L | 7125319..7125422 | 120..17 | 520 | 100 | Minus |
3L | 28110227 | 3L | 7124234..7124342 | 964..856 | 485 | 96.3 | Minus |
Blast to na_te.dros performed on 2015-02-12 19:45:25 has no hits.
BO12101.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:25:59 Download gff for
BO12101.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
msl-3-PA | 1..948 | 17..964 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 04:57:34 Download gff for
BO12101.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8631-PA | 1..948 | 17..964 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 10:20:41 Download gff for
BO12101.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
msl-3-RA | 108..1059 | 10..964 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 00:53:10 Download gff for
BO12101.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
msl-3-RA | 108..1059 | 10..964 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 00:53:10 Download gff for
BO12101.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 7124234..7124342 | 856..964 | 98 | <- | Minus |
3L | 7124401..7124958 | 298..855 | 100 | <- | Minus |
3L | 7125025..7125203 | 119..297 | 100 | <- | Minus |
3L | 7125321..7125426 | 10..118 | 97 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 10:20:41 Download gff for
BO12101.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 7117334..7117442 | 856..964 | 98 | <- | Minus |
arm_3L | 7117501..7118058 | 298..855 | 100 | <- | Minus |
arm_3L | 7118125..7118303 | 119..297 | 100 | <- | Minus |
arm_3L | 7118421..7118526 | 10..118 | 97 | | Minus |
BO12101.complete Sequence
1570 bp assembled on 2006-10-11
GenBank Submission: FJ632308
> BO12101.complete
GAAGTTATCAGTCGACATGACGGAGCTAAGGGACGAGACACCGCTCTTTC
ACAAGGGCGAGATAGTCCTTTGCTACGAGCCGGATAAATCGAAGGCCCGT
GTTCTTTACACCAGCAAGGTGCTAAACGTCTTTGAGCGCCGGAACGAGCA
TGGCCTGAGGTTCTACGAGTACAAGATTCACTTCCAGGGCTGGCGTCCAT
CCTACGATCGCTGTGTGCGCGCCACCGTTCTATTGAAAGACACCGAGGAG
AATCGCCAGTTGCAAAGGGAGCTGGCCGAAGCTGCCAAGCTGCAAATTCG
TGGTGACTACTCCTACAAGGGCACACCCGATAAGCCATCGGCCAAGAAGA
AACGCGGCGGAAAAGCGGCCCACGTTGAGGAGCCAATAGTGGTTCCAATG
GACACGGGACATCTTGAGGCGGAGCACGAAATGGCGCCCACTCCACGAGC
AGCGGGCAACCGGACGCGGGACAACAGCGGTGGCAAGCGAAAGGAAAAAC
CCCCGTCCGGAGATGGCCGATTAAAGGGAAACCGGGGCAGACAAACAGAG
ACCTTTTATAACAATGCCATAAATGATGTATCGGTCTATAACCATGTGCC
ACAGGAGGATCGCATTATGATGCGAGTCAGCGAGCGATTGCGAGAGCTTA
TAGAGTACGATCGGAATATGATCAAGGTACTAGGCAAACAGCACGCACTG
CCCGCCCGCGTGCCCATCGTGACCATCATGGAAAACTTCGTCAAGCAGCA
GGCCGTGGAGCTAGCCATTAGCATTAAACAGGACAGCTCGAGGGCCAGGA
ACACGCAGAGTCGCAATGCCAGAATGGAGCGGGAATACGATCGCGTTATG
TCCACTGTCTGCATGCTGAAGGAGGTGGTAGACGGATTGCGTATCTACTT
TGAGTTCCACGTGGATGACCACTTGCTGTATACGGAGGAGAAGGAGTATG
TCCACAACTACCTCACAGACGACAACATGCGCAACTGCAGCCTAATATTG
AACAAGTCGTACGAGTATATCAATCCCAGCGGTGACACGGAACTGATCGG
TCTGGACGGCACGCCAGTGGTAGAAGGGTCGGGCGACACCAATGGACAGA
TCGGAGTTATTAATATCGGCGGTCCGGAGTACGAGAAGCAGTTGCAAAAA
TGCCTGCTCTACATTGTTACCGCCAGCGGGAAAAACACTGCGCAGGCCTA
TGAGAGGACTTCCCCATATACGGCTGCCTACAAACTGCCCGTGGAGATGC
GTGGATTTCTGAACGAAACATTCAAGTGGCGGCTTTTGTCAGCGGAATCG
CCGCCAGAAAAGTCCATGGTCTTTGGCGCTCCCCACCTGGTTAGGCTAAT
GATTAAAATGCCCATGTTCTTAAACGCATCGCCGATCAGCAACAAGAAGC
TAGAAGATCTACTTCCCCACCTCGACGCCTTCATCAACTACTTGGAGAAC
CACAGGGAGTGGTTCGACAGGGAAAACTTTGTTAACTCCACTGCCCTGCC
CCAGGAAGATCTGCAGCGGGAGCTGTTGGACTCCCTGGATGGGATTGCTG
CTGCAAGCTTTCTAGACCAT
BO12101.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 13:49:41
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
msl-3-RA | 1539 | CG8631-PA | 1..1536 | 17..1552 | 7680 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 13:49:42
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
msl-3-RA | 1970 | CG8631-RA | 112..1647 | 17..1552 | 7680 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 13:49:40
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 7124401..7124958 | 855..298 | 2790 | 100 | Minus |
3L | 28110227 | 3L | 7123846..7124342 | 1352..856 | 2485 | 100 | Minus |
3L | 28110227 | 3L | 7125025..7125205 | 297..117 | 905 | 100 | Minus |
3L | 28110227 | 3L | 7123536..7123654 | 1552..1434 | 580 | 99.2 | Minus |
3L | 28110227 | 3L | 7125319..7125422 | 120..17 | 520 | 100 | Minus |
3L | 28110227 | 3L | 7123706..7123790 | 1437..1353 | 425 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 13:49:41 has no hits.
BO12101.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:00:31 Download gff for
BO12101.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
msl-3-RA | 1..1539 | 17..1553 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:12:42 Download gff for
BO12101.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
msl-3-RA | 98..1646 | 10..1565 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:25:59 Download gff for
BO12101.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
msl-3-RA | 112..1647 | 17..1554 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:00:31 Download gff for
BO12101.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
msl-3-RA | 98..1646 | 10..1565 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:56:49 Download gff for
BO12101.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
msl-3-RA | 112..1647 | 17..1554 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 14:56:49 Download gff for
BO12101.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 7123532..7123650 | 1438..1554 | 98 | <- | Minus |
3L | 7123706..7123790 | 1353..1437 | 100 | <- | Minus |
3L | 7123846..7124342 | 856..1352 | 100 | <- | Minus |
3L | 7124401..7124958 | 298..855 | 100 | <- | Minus |
3L | 7125025..7125203 | 119..297 | 100 | <- | Minus |
3L | 7125321..7125422 | 17..118 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:25:59 Download gff for
BO12101.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 7116632..7116750 | 1438..1554 | 98 | <- | Minus |
arm_3L | 7116806..7116890 | 1353..1437 | 100 | <- | Minus |
arm_3L | 7116946..7117442 | 856..1352 | 100 | <- | Minus |
arm_3L | 7117501..7118058 | 298..855 | 100 | <- | Minus |
arm_3L | 7118125..7118303 | 119..297 | 100 | <- | Minus |
arm_3L | 7118421..7118522 | 17..118 | 100 | | Minus |
BO12101.pep Sequence
Translation from 16 to 1570
> BO12101.pep
MTELRDETPLFHKGEIVLCYEPDKSKARVLYTSKVLNVFERRNEHGLRFY
EYKIHFQGWRPSYDRCVRATVLLKDTEENRQLQRELAEAAKLQIRGDYSY
KGTPDKPSAKKKRGGKAAHVEEPIVVPMDTGHLEAEHEMAPTPRAAGNRT
RDNSGGKRKEKPPSGDGRLKGNRGRQTETFYNNAINDVSVYNHVPQEDRI
MMRVSERLRELIEYDRNMIKVLGKQHALPARVPIVTIMENFVKQQAVELA
ISIKQDSSRARNTQSRNARMEREYDRVMSTVCMLKEVVDGLRIYFEFHVD
DHLLYTEEKEYVHNYLTDDNMRNCSLILNKSYEYINPSGDTELIGLDGTP
VVEGSGDTNGQIGVINIGGPEYEKQLQKCLLYIVTASGKNTAQAYERTSP
YTAAYKLPVEMRGFLNETFKWRLLSAESPPEKSMVFGAPHLVRLMIKMPM
FLNASPISNKKLEDLLPHLDAFINYLENHREWFDRENFVNSTALPQEDLQ
RELLDSLDGIAAASFLDH
BO12101.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:58:04
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
msl-3-PA | 512 | CG8631-PA | 1..512 | 1..512 | 2679 | 100 | Plus |