Clone BO12101 Report

Search the DGRC for BO12101

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:121
Well:1
Vector:pDNR-Dual
Associated Gene/Transcriptmsl-3-RA
Protein status:BO12101.pep: validated full length
Sequenced Size:1570

Clone Sequence Records

BO12101.3prime Sequence

983 bp (862 high quality bases) assembled on 2006-04-20

> BO12101.3prime
ATGGTCTAGAAAGCTTGCAGCAGCAATCCCATCCAGGGAGTCCAACAGCT
CCCGCTGCAGATCTTCCTGGGGCAGGGCAGTGGAGTTAACAAAGTTTTCC
CTGTCGAACCACTCCCTGTGGTTCTCCAAGTAGTTGATGAAGGCGTCGAG
GTGGGGAAGTAGATCTTCTAGCTTCTTGTTGCTGATCGGCGATGCGTTTA
AGAACATGGGCATTTTAATCATTAGCCTAACCAGGTGGGGAGCGCCAAAG
ACCATGGACTTTTCTGGCGGCGATTCCGCTGACAAAAGCCGCCACTTGAA
TGTTTCGTTCAGAAATCCACGCATCTCCACGGGCAGTTTGTAGGCAGCCG
TATATGGGGAAGTCCTCTCATAGGCCTGCGCAGTGTTTTTCCCGCTGGCG
GTAACAATGTAGAGCAGGCATTTTTGCAACTGCTTCTCGTACTCCGGACC
GCCGATATTAATAACTCCGATCTGTCCATTGGTGTCGCCCGACCCTTCTA
CCACTGGCGTGCCGTCCAGACCGATCAGTTCCGTGTCACCGCTGGGATTG
ATATACTCGTACGACTTGTTCAATATTAGGCTGCAGTTGCGCATGTTGTC
GTCTGTGAGGTAGTTGTGGACATACTCCTTCTCCTCCGTATACAGCAAGT
GGTCATCCACGTGGAACTCAAAGTAGATACGCAATCCGTCTACCACCTCC
TTCAGCATGCAGACAGTGGACATAACGCGATCGTATTCCCGCTCCATTCT
GGCATTGCGACTCTGCGTGTTCCTGGCCCTCGAGCTGTCCTGTTTAATGC
TAATGGCTAGCTCCACGGCCTGCTGCTTGACGAAGTTTTCCATGATGGTC
ACGATGGGCACGCGGGCGGGCAGTGCGTGCTGTTTGCCTAGTACCTTGAT
CATATTCCGATCGTACTCTATAAGCTCTCGCAATCGCTCGCTGACTCGCA
TCATAATGCGATCCTCCTGTGGCACATGGTTAT

BO12101.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:37:05
Subject Length Description Subject Range Query Range Score Percent Strand
CG8631-PA 1539 msl-3-RA 572..1536 983..19 4825 100 Minus
CG8631-PB 1446 msl-3-RB 479..1443 983..19 4825 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 03:54:36
Subject Length Description Subject Range Query Range Score Percent Strand
msl-3-RA 1970 CG8631-RA 683..1647 983..19 4825 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 03:54:34
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 7123846..7124342 219..715 2485 100 Plus
3L 28110227 3L 7124401..7124668 716..983 1340 100 Plus
3L 28110227 3L 7123536..7123654 19..137 580 99.2 Plus
3L 28110227 3L 7123706..7123790 134..218 425 100 Plus
Blast to na_te.dros performed on 2015-02-12 03:54:35 has no hits.

BO12101.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:25:58 Download gff for BO12101.3prime
Subject Subject Range Query Range Percent Splice Strand
msl-3-PB 479..1446 18..983 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 04:57:33 Download gff for BO12101.3prime
Subject Subject Range Query Range Percent Splice Strand
CG8631-PB 479..1446 18..983 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 22:56:10 Download gff for BO12101.3prime
Subject Subject Range Query Range Percent Splice Strand
msl-3-RA 683..1656 6..983 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 06:49:13 Download gff for BO12101.3prime
Subject Subject Range Query Range Percent Splice Strand
msl-3-RA 683..1656 6..983 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 06:49:13 Download gff for BO12101.3prime
Subject Subject Range Query Range Percent Splice Strand
3L 7123527..7123650 6..133 96 <- Plus
3L 7123706..7123790 134..218 100 <- Plus
3L 7123846..7124342 219..715 100 <- Plus
3L 7124401..7124668 716..983 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 22:56:10 Download gff for BO12101.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 7116627..7116750 6..133 96 <- Plus
arm_3L 7116806..7116890 134..218 100 <- Plus
arm_3L 7116946..7117442 219..715 100 <- Plus
arm_3L 7117501..7117768 716..983 100   Plus

BO12101.5prime Sequence

964 bp (748 high quality bases) assembled on 2006-04-20

> BO12101.5prime
GAAGTTATCAGTCGACATGACGGAGCTAAGGGACGAGACACCGCTCTTTC
ACAAGGGCGAGATAGTCCTTTGCTACGAGCCGGATAAATCGAAGGCCCGT
GTTCTTTACACCAGCAAGGTGCTAAACGTCTTTGAGCGCCGGAACGAGCA
TGGCCTGAGGTTCTACGAGTACAAGATTCACTTCCAGGGCTGGCGTCCAT
CCTACGATCGCTGTGTGCGCGCCACCGTTCTATTGAAAGACACCGAGGAG
AATCGCCAGTTGCAAAGGGAGCTGGCCGAAGCTGCCAAGCTGCAAATTCG
TGGTGACTACTCCTACAAGGGCACACCCGATAAGCCATCGGCCAAGAAGA
AACGCGGCGGAAAAGCGGCCCACGTTGAGGAGCCAATAGTGGTTCCAATG
GACACGGGACATCTTGAGGCGGAGCACGAAATGGCGCCCACTCCACGAGC
AGCGGGCAACCGGACGCGGGACAACAGCGGTGGCAAGCGAAAGGAAAAAC
CCCCGTCCGGAGATGGCCGATTAAAGGGAAACCGGGGCAGACAAACAGAG
ACCTTTTATAACAATGCCATAAATGATGTATCGGTCTATAACCATGTGCC
ACAGGAGGATCGCATTATGATGCGAGTCAGCGAGCGATTGCGAGAGCTTA
TAGAGTACGATCGGAATATGATCAAGGTACTAGGCAAACAGCACGCACTG
CCCGCCCGCGTGCCCATCGTGACCATCATGGAAAACTTCGTCAAGCAGCA
GGCCGTGGAGCTAGCCATTAGCATTAAACAGGACAGCTCGAGGGCCAGGA
ACACGCAGAGTCGCAATGCCAGAATGGAGCGGGAATACGATCGCGTTATG
TCCACTGTCTGCATGCTGAAGGAGGTGGTAGACGGATTGCGTATCTACTT
TTGAGTCCACGTGGATGACCACTTGCTGTATACGGAGGAGAAGGAGTATG
TCCACAACTACCTC

BO12101.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:37:06
Subject Length Description Subject Range Query Range Score Percent Strand
CG8631-PA 1539 msl-3-RA 1..885 17..901 4425 100 Plus
CG8631-PB 1446 msl-3-RB 8..792 117..901 3925 100 Plus
CG8631-PA 1539 msl-3-RA 890..948 906..964 295 100 Plus
CG8631-PB 1446 msl-3-RB 797..855 906..964 295 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 19:45:26
Subject Length Description Subject Range Query Range Score Percent Strand
msl-3-RA 1970 CG8631-RA 112..1059 17..964 4695 99.8 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 19:45:23
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 7124401..7124958 855..298 2790 100 Minus
3L 28110227 3L 7125025..7125205 297..117 905 100 Minus
3L 28110227 3L 7125319..7125422 120..17 520 100 Minus
3L 28110227 3L 7124234..7124342 964..856 485 96.3 Minus
Blast to na_te.dros performed on 2015-02-12 19:45:25 has no hits.

BO12101.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:25:59 Download gff for BO12101.5prime
Subject Subject Range Query Range Percent Splice Strand
msl-3-PA 1..948 17..964 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 04:57:34 Download gff for BO12101.5prime
Subject Subject Range Query Range Percent Splice Strand
CG8631-PA 1..948 17..964 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 10:20:41 Download gff for BO12101.5prime
Subject Subject Range Query Range Percent Splice Strand
msl-3-RA 108..1059 10..964 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 00:53:10 Download gff for BO12101.5prime
Subject Subject Range Query Range Percent Splice Strand
msl-3-RA 108..1059 10..964 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 00:53:10 Download gff for BO12101.5prime
Subject Subject Range Query Range Percent Splice Strand
3L 7124234..7124342 856..964 98 <- Minus
3L 7124401..7124958 298..855 100 <- Minus
3L 7125025..7125203 119..297 100 <- Minus
3L 7125321..7125426 10..118 97   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 10:20:41 Download gff for BO12101.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 7117334..7117442 856..964 98 <- Minus
arm_3L 7117501..7118058 298..855 100 <- Minus
arm_3L 7118125..7118303 119..297 100 <- Minus
arm_3L 7118421..7118526 10..118 97   Minus

BO12101.complete Sequence

1570 bp assembled on 2006-10-11

GenBank Submission: FJ632308

> BO12101.complete
GAAGTTATCAGTCGACATGACGGAGCTAAGGGACGAGACACCGCTCTTTC
ACAAGGGCGAGATAGTCCTTTGCTACGAGCCGGATAAATCGAAGGCCCGT
GTTCTTTACACCAGCAAGGTGCTAAACGTCTTTGAGCGCCGGAACGAGCA
TGGCCTGAGGTTCTACGAGTACAAGATTCACTTCCAGGGCTGGCGTCCAT
CCTACGATCGCTGTGTGCGCGCCACCGTTCTATTGAAAGACACCGAGGAG
AATCGCCAGTTGCAAAGGGAGCTGGCCGAAGCTGCCAAGCTGCAAATTCG
TGGTGACTACTCCTACAAGGGCACACCCGATAAGCCATCGGCCAAGAAGA
AACGCGGCGGAAAAGCGGCCCACGTTGAGGAGCCAATAGTGGTTCCAATG
GACACGGGACATCTTGAGGCGGAGCACGAAATGGCGCCCACTCCACGAGC
AGCGGGCAACCGGACGCGGGACAACAGCGGTGGCAAGCGAAAGGAAAAAC
CCCCGTCCGGAGATGGCCGATTAAAGGGAAACCGGGGCAGACAAACAGAG
ACCTTTTATAACAATGCCATAAATGATGTATCGGTCTATAACCATGTGCC
ACAGGAGGATCGCATTATGATGCGAGTCAGCGAGCGATTGCGAGAGCTTA
TAGAGTACGATCGGAATATGATCAAGGTACTAGGCAAACAGCACGCACTG
CCCGCCCGCGTGCCCATCGTGACCATCATGGAAAACTTCGTCAAGCAGCA
GGCCGTGGAGCTAGCCATTAGCATTAAACAGGACAGCTCGAGGGCCAGGA
ACACGCAGAGTCGCAATGCCAGAATGGAGCGGGAATACGATCGCGTTATG
TCCACTGTCTGCATGCTGAAGGAGGTGGTAGACGGATTGCGTATCTACTT
TGAGTTCCACGTGGATGACCACTTGCTGTATACGGAGGAGAAGGAGTATG
TCCACAACTACCTCACAGACGACAACATGCGCAACTGCAGCCTAATATTG
AACAAGTCGTACGAGTATATCAATCCCAGCGGTGACACGGAACTGATCGG
TCTGGACGGCACGCCAGTGGTAGAAGGGTCGGGCGACACCAATGGACAGA
TCGGAGTTATTAATATCGGCGGTCCGGAGTACGAGAAGCAGTTGCAAAAA
TGCCTGCTCTACATTGTTACCGCCAGCGGGAAAAACACTGCGCAGGCCTA
TGAGAGGACTTCCCCATATACGGCTGCCTACAAACTGCCCGTGGAGATGC
GTGGATTTCTGAACGAAACATTCAAGTGGCGGCTTTTGTCAGCGGAATCG
CCGCCAGAAAAGTCCATGGTCTTTGGCGCTCCCCACCTGGTTAGGCTAAT
GATTAAAATGCCCATGTTCTTAAACGCATCGCCGATCAGCAACAAGAAGC
TAGAAGATCTACTTCCCCACCTCGACGCCTTCATCAACTACTTGGAGAAC
CACAGGGAGTGGTTCGACAGGGAAAACTTTGTTAACTCCACTGCCCTGCC
CCAGGAAGATCTGCAGCGGGAGCTGTTGGACTCCCTGGATGGGATTGCTG
CTGCAAGCTTTCTAGACCAT

BO12101.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 13:49:41
Subject Length Description Subject Range Query Range Score Percent Strand
msl-3-RA 1539 CG8631-PA 1..1536 17..1552 7680 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 13:49:42
Subject Length Description Subject Range Query Range Score Percent Strand
msl-3-RA 1970 CG8631-RA 112..1647 17..1552 7680 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 13:49:40
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 7124401..7124958 855..298 2790 100 Minus
3L 28110227 3L 7123846..7124342 1352..856 2485 100 Minus
3L 28110227 3L 7125025..7125205 297..117 905 100 Minus
3L 28110227 3L 7123536..7123654 1552..1434 580 99.2 Minus
3L 28110227 3L 7125319..7125422 120..17 520 100 Minus
3L 28110227 3L 7123706..7123790 1437..1353 425 100 Minus
Blast to na_te.dros performed on 2014-11-27 13:49:41 has no hits.

BO12101.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:00:31 Download gff for BO12101.complete
Subject Subject Range Query Range Percent Splice Strand
msl-3-RA 1..1539 17..1553 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:12:42 Download gff for BO12101.complete
Subject Subject Range Query Range Percent Splice Strand
msl-3-RA 98..1646 10..1565 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:25:59 Download gff for BO12101.complete
Subject Subject Range Query Range Percent Splice Strand
msl-3-RA 112..1647 17..1554 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:00:31 Download gff for BO12101.complete
Subject Subject Range Query Range Percent Splice Strand
msl-3-RA 98..1646 10..1565 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:56:49 Download gff for BO12101.complete
Subject Subject Range Query Range Percent Splice Strand
msl-3-RA 112..1647 17..1554 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 14:56:49 Download gff for BO12101.complete
Subject Subject Range Query Range Percent Splice Strand
3L 7123532..7123650 1438..1554 98 <- Minus
3L 7123706..7123790 1353..1437 100 <- Minus
3L 7123846..7124342 856..1352 100 <- Minus
3L 7124401..7124958 298..855 100 <- Minus
3L 7125025..7125203 119..297 100 <- Minus
3L 7125321..7125422 17..118 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:25:59 Download gff for BO12101.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 7116632..7116750 1438..1554 98 <- Minus
arm_3L 7116806..7116890 1353..1437 100 <- Minus
arm_3L 7116946..7117442 856..1352 100 <- Minus
arm_3L 7117501..7118058 298..855 100 <- Minus
arm_3L 7118125..7118303 119..297 100 <- Minus
arm_3L 7118421..7118522 17..118 100   Minus

BO12101.pep Sequence

Translation from 16 to 1570

> BO12101.pep
MTELRDETPLFHKGEIVLCYEPDKSKARVLYTSKVLNVFERRNEHGLRFY
EYKIHFQGWRPSYDRCVRATVLLKDTEENRQLQRELAEAAKLQIRGDYSY
KGTPDKPSAKKKRGGKAAHVEEPIVVPMDTGHLEAEHEMAPTPRAAGNRT
RDNSGGKRKEKPPSGDGRLKGNRGRQTETFYNNAINDVSVYNHVPQEDRI
MMRVSERLRELIEYDRNMIKVLGKQHALPARVPIVTIMENFVKQQAVELA
ISIKQDSSRARNTQSRNARMEREYDRVMSTVCMLKEVVDGLRIYFEFHVD
DHLLYTEEKEYVHNYLTDDNMRNCSLILNKSYEYINPSGDTELIGLDGTP
VVEGSGDTNGQIGVINIGGPEYEKQLQKCLLYIVTASGKNTAQAYERTSP
YTAAYKLPVEMRGFLNETFKWRLLSAESPPEKSMVFGAPHLVRLMIKMPM
FLNASPISNKKLEDLLPHLDAFINYLENHREWFDRENFVNSTALPQEDLQ
RELLDSLDGIAAASFLDH

BO12101.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:58:04
Subject Length Description Subject Range Query Range Score Percent Strand
msl-3-PA 512 CG8631-PA 1..512 1..512 2679 100 Plus